Index of /klif/erys_marta/selection_orthology

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[IMG]unique_vs_new_genes.png2023-06-23 15:24 74K 
[TXT]summary_statistics.txt2023-06-23 15:24 200  
[TXT]snp_matrix.txt2024-02-16 14:53 0  
[ ]roary.stdout.log2023-06-23 15:30 4.7K 
[ ]roary.error.log2023-06-23 15:41 422K 
[DIR]pan_genome_sequences/2023-06-23 15:58 -  
[ ]pan_genome_reference.fa2023-06-23 15:30 2.2M 
[ ]orthology2023-06-23 15:23 1.4M 
[ ]number_of_unique_genes.Rtab2023-06-23 15:24 1.4K 
[ ]number_of_new_genes.Rtab2023-06-23 15:24 854  
[ ]number_of_genes_in_pan_genome.Rtab2023-06-23 15:24 1.7K 
[ ]number_of_conserved_genes.Rtab2023-06-23 15:24 1.7K 
[IMG]minimum spanning SNP tree.svg2023-06-23 15:56 29K 
[ ]minimum spanning SNP tree.pdf2023-06-23 15:57 112K 
[ ]marta.fasta2024-02-16 14:56 181K 
[TXT]gene_presence_absence.csv2023-06-23 15:24 1.8M 
[ ]gene_presence_absence.Rtab2023-06-23 15:24 180K 
[ ]core_gene_alignment.aln.snp_sites.tree.pdf2023-06-23 15:51 2.7K 
[ ]core_gene_alignment.aln.snp_sites.tree2023-06-23 15:47 1.5K 
[ ]core_gene_alignment.aln.snp_sites.aln.grapetree2023-06-23 15:53 813  
[ ]core_gene_alignment.aln.snp_sites.aln2023-06-23 15:43 1.5M 
[ ]core_gene_alignment.aln2023-06-23 15:41 36M 
[ ]core_alignment_header.embl2023-06-23 15:41 131K 
[ ]core_accessory_graph.dot2023-06-23 15:24 179K 
[ ]core_accessory.tab2023-06-23 15:24 1.3M 
[ ]core_accessory.header.embl2023-06-23 15:24 304K 
[IMG]conserved_vs_total_genes.png2023-06-23 15:24 61K 
[ ]blast_identity_frequency.Rtab2023-06-23 15:23 142  
[TXT]annotate.sh2023-06-23 15:12 5.3K 
[ ]accessory_graph.dot2023-06-23 15:24 49K 
[ ]accessory_binary_genes.fa_midpoint_root.newick.pdf2023-06-23 15:41 2.9K 
[ ]accessory_binary_genes.fa_midpoint_root.newick2023-06-23 15:41 1.9K 
[ ]accessory_binary_genes.fa.newick2023-06-23 15:23 1.5K 
[ ]accessory_binary_genes.fa2023-06-23 15:23 14K 
[ ]accessory.tab2023-06-23 15:24 180K 
[ ]accessory.header.embl2023-06-23 15:24 110K 
[ ]_uninflated_mcl_groups2023-06-23 15:23 106K 
[ ]_labeled_mcl_groups2023-06-23 15:23 1.5M 
[ ]_inflated_mcl_groups2023-06-23 15:23 1.4M 
[ ]_combined_files.groups2023-06-23 15:23 621K 
[ ]_combined_files2023-06-23 15:23 12M 
[ ]_clustered.clstr2023-06-23 15:23 1.6M 
[ ]_clustered2023-06-23 15:23 1.2M 
[ ]_blast_results2023-06-23 15:23 1.1M 
[ ]_accessory_clusters.clstr2023-06-23 15:23 1.5K 
[ ]_accessory_clusters2023-06-23 15:23 4.2K 
[ ]Rplots.pdf2023-06-23 15:24 20K 
[DIR]OqI42Jq8Te/2023-06-23 15:58 -  
[ ]MST_core_gene_superalignment.pdf2024-02-16 15:04 113K 
[IMG]MST_core_gene_superalignment.SVG2024-02-16 15:04 29K