Command line: /usr/local/bin/spades.py	-o	/mnt/DGK_KLIF/data/klif/erys_marta/sra/reads/trimmedreads/ERR3678840	-1	/mnt/DGK_KLIF/data/klif/erys_marta/sra/reads/trimmedreads/ERR3678840_1_val_1.fq	-2	/mnt/DGK_KLIF/data/klif/erys_marta/sra/reads/trimmedreads/ERR3678840_2_val_2.fq	--isolate	-t	16	

System information:
  SPAdes version: 3.14.1
  Python version: 2.7.12
  OS: Linux-4.4.0-245-generic-x86_64-with-Ubuntu-16.04-xenial

Output dir: /mnt/DGK_KLIF/data/klif/erys_marta/sra/reads/trimmedreads/ERR3678840
Mode: ONLY assembling (without read error correction)
Debug mode is turned OFF

Dataset parameters:
  Isolate mode
  Reads:
    Library number: 1, library type: paired-end
      orientation: fr
      left reads: ['/mnt/DGK_KLIF/data/klif/erys_marta/sra/reads/trimmedreads/ERR3678840_1_val_1.fq']
      right reads: ['/mnt/DGK_KLIF/data/klif/erys_marta/sra/reads/trimmedreads/ERR3678840_2_val_2.fq']
      interlaced reads: not specified
      single reads: not specified
      merged reads: not specified
Assembly parameters:
  k: automatic selection based on read length
  Repeat resolution is enabled
  Mismatch careful mode is turned OFF
  MismatchCorrector will be SKIPPED
  Coverage cutoff is turned OFF
Other parameters:
  Dir for temp files: /mnt/DGK_KLIF/data/klif/erys_marta/sra/reads/trimmedreads/ERR3678840/tmp
  Threads: 16
  Memory limit (in Gb): 125