# ResFinder phenotype results for escherichia coli. # Sample: assembly.fasta # # The phenotype 'No resistance' should be interpreted with # caution, as it only means that nothing in the used # database indicate resistance, but resistance could exist # from 'unknown' or not yet implemented sources. # # The 'Match' column stores one of the integers 0, 1, 2, 3. # 0: No match found # 1: Match < 100% ID AND match length < ref length # 2: Match = 100% ID AND match length < ref length # 3: Match = 100% ID AND match length = ref length # If several hits causing the same resistance are found, # the highest number will be stored in the 'Match' column. # Antimicrobial Class WGS-predicted phenotype Match Genetic background nalidixic acid fluoroquinolone No resistance 0 cefepime beta-lactam No resistance 0 azithromycin macrolide No resistance 0 cefotaxime beta-lactam No resistance 0 ampicillin+clavulanic acid beta-lactam No resistance 0 temocillin beta-lactam No resistance 0 ciprofloxacin fluoroquinolone No resistance 0 trimethoprim folate pathway antagonist No resistance 0 ceftazidime beta-lactam No resistance 0 amikacin aminoglycoside No resistance 0 chloramphenicol phenicol No resistance 0 ertapenem beta-lactam No resistance 0 colistin polymyxin No resistance 0 meropenem beta-lactam No resistance 0 tobramycin aminoglycoside No resistance 0 imipenem beta-lactam No resistance 0 fosfomycin fosfomycin No resistance 0 ampicillin beta-lactam No resistance 0 gentamicin aminoglycoside No resistance 0 cefoxitin beta-lactam No resistance 0 sulfamethoxazole folate pathway antagonist No resistance 0 tigecycline tetracycline No resistance 0 tetracycline tetracycline No resistance 0 piperacillin+tazobactam beta-lactam No resistance 0 # WARNING: Missing features from phenotype database: # Feature_ID Region Database Hit 16S_rrsC_238_t 16S_rrsC 16S_rrsC_241_g 16S_rrsC 16S_rrsC_244_t 16S_rrsC 16S_rrsC_247_a 16S_rrsC 16S_rrsC_252_g 16S_rrsC 16S_rrsC_255_c 16S_rrsC 16S_rrsC_258_t 16S_rrsC 16S_rrsC_259_t 16S_rrsC 16S_rrsC_261_c 16S_rrsC 16S_rrsC_262_c 16S_rrsC 16S_rrsC_265_a 16S_rrsC 16S_rrsC_269_c 16S_rrsC 16S_rrsC_270_a 16S_rrsC 16S_rrsC_280_a 16S_rrsC 16S_rrsC_305_t 16S_rrsC 16S_rrsC_309_t 16S_rrsC 16S_rrsC_310_g 16S_rrsC 16S_rrsC_321_t 16S_rrsC 16S_rrsC_322_c 16S_rrsC 16S_rrsC_331_t 16S_rrsC 16S_rrsC_343_g 16S_rrsC 16S_rrsC_345_a 16S_rrsC 16S_rrsC_346_g 16S_rrsC 16S_rrsC_359_a 16S_rrsC 16S_rrsC_361_c 16S_rrsC 16S_rrsC_366_c 16S_rrsC 16S_rrsC_367_t 16S_rrsC 16S_rrsC_368_t 16S_rrsC 16S_rrsC_371_g 16S_rrsC 16S_rrsC_373_t 16S_rrsC 16S_rrsC_377_g 16S_rrsC 16S_rrsC_378_t 16S_rrsC 16S_rrsC_379_t 16S_rrsC 16S_rrsC_381_g 16S_rrsC 16S_rrsC_387_t 16S_rrsC 16S_rrsC_392_c 16S_rrsC 16S_rrsC_393_c 16S_rrsC 16S_rrsC_395_t 16S_rrsC 16S_rrsC_396_g 16S_rrsC 16S_rrsC_398_c 16S_rrsC 16S_rrsC_401_c 16S_rrsC 16S_rrsC_404_c 16S_rrsC 16S_rrsC_405_a 16S_rrsC 16S_rrsC_408_a 16S_rrsC 16S_rrsC_414_t 16S_rrsC 16S_rrsC_416_g 16S_rrsC 16S_rrsC_417_a 16S_rrsC 16S_rrsC_420_a 16S_rrsC 16S_rrsC_425_g 16S_rrsC 16S_rrsC_426_c 16S_rrsC 16S_rrsC_427_a 16S_rrsC 16S_rrsC_429_g 16S_rrsC 16S_rrsC_435_t 16S_rrsC 16S_rrsC_436_t 16S_rrsC 16S_rrsC_437_a 16S_rrsC 16S_rrsC_440_g 16S_rrsC 16S_rrsC_449_t 16S_rrsC 16S_rrsC_460_a 16S_rrsC 16S_rrsC_472_t 16S_rrsC 16S_rrsC_475_a 16S_rrsC 16S_rrsC_484_c 16S_rrsC 16S_rrsC_488_a 16S_rrsC 16S_rrsC_503_t 16S_rrsC 16S_rrsC_504_a 16S_rrsC 16S_rrsC_505_a 16S_rrsC 16S_rrsC_510_c 16S_rrsC 16S_rrsC_512_t 16S_rrsC 16S_rrsC_513_t 16S_rrsC 16S_rrsC_515_g 16S_rrsC 16S_rrsC_525_g 16S_rrsC 16S_rrsC_529_c 16S_rrsC 16S_rrsC_530_t 16S_rrsC 16S_rrsC_550_t 16S_rrsC 16S_rrsC_566_a 16S_rrsC 16S_rrsC_589_g 16S_rrsC 16S_rrsC_590_a 16S_rrsC 16S_rrsC_591_t 16S_rrsC 16S_rrsC_596_tg 16S_rrsC 16S_rrsC_597_a 16S_rrsC 16S_rrsC_600_t 16S_rrsC 16S_rrsC_603_g 16S_rrsC 16S_rrsC_604_a 16S_rrsC 16S_rrsC_606_a 16S_rrsC 16S_rrsC_607_a 16S_rrsC 16S_rrsC_608_a 16S_rrsC 16S_rrsC_611_c 16S_rrsC 16S_rrsC_615_ggc 16S_rrsC 16S_rrsC_618_g 16S_rrsC 16S_rrsC_621_t 16S_rrsC 16S_rrsC_624_cc 16S_rrsC 16S_rrsC_626_t 16S_rrsC 16S_rrsC_629_t 16S_rrsC 16S_rrsC_636_a 16S_rrsC 16S_rrsC_637_a 16S_rrsC 16S_rrsC_643_a 16S_rrsC 16S_rrsC_644_t 16S_rrsC 16S_rrsC_645_c 16S_rrsC 16S_rrsC_660_t 16S_rrsC 16S_rrsC_662_c 16S_rrsC 16S_rrsC_663_g 16S_rrsC 16S_rrsC_670_c 16S_rrsC 16S_rrsC_671_g 16S_rrsC 16S_rrsC_683_g 16S_rrsC 16S_rrsC_715_t 16S_rrsC 16S_rrsC_732_a 16S_rrsC 16S_rrsC_753_a 16S_rrsC 16S_rrsC_765_a 16S_rrsC 16S_rrsC_767_g 16S_rrsC 16S_rrsC_770_c 16S_rrsC 16S_rrsC_773_a 16S_rrsC 16S_rrsC_774_a 16S_rrsC 16S_rrsC_775_g 16S_rrsC 16S_rrsC_776_c 16S_rrsC 16S_rrsC_777_a 16S_rrsC 16S_rrsC_786_t 16S_rrsC 16S_rrsC_788_t 16S_rrsC 16S_rrsC_791_g 16S_rrsC 16S_rrsC_792_a 16S_rrsC 16S_rrsC_795_cc 16S_rrsC 16S_rrsC_798_a 16S_rrsC 16S_rrsC_799_t 16S_rrsC 16S_rrsC_804_aac 16S_rrsC 16S_rrsC_807_t 16S_rrsC 16S_rrsC_810_t 16S_rrsC 16S_rrsC_818_g 16S_rrsC 16S_rrsC_826_t 16S_rrsC 16S_rrsC_843_c 16S_rrsC 16S_rrsC_848_g 16S_rrsC 16S_rrsC_884_g 16S_rrsC 16S_rrsC_887_t 16S_rrsC 16S_rrsC_890_a 16S_rrsC 16S_rrsC_894_a 16S_rrsC 16S_rrsC_900_g 16S_rrsC 16S_rrsC_901_a 16S_rrsC 16S_rrsC_903_t 16S_rrsC 16S_rrsC_904_a 16S_rrsC 16S_rrsC_905_a 16S_rrsC 16S_rrsC_907_t 16S_rrsC 16S_rrsC_908_t 16S_rrsC 16S_rrsC_912_g 16S_rrsC 16S_rrsC_917_t 16S_rrsC 16S_rrsC_920_a 16S_rrsC 16S_rrsC_930_g 16S_rrsC 16S_rrsC_940_c 16S_rrsC 16S_rrsC_965_a 16S_rrsC 16S_rrsC_974_c 16S_rrsC 16S_rrsC_981_t 16S_rrsC 16S_rrsC_984_t 16S_rrsC 16S_rrsC_986_t 16S_rrsC 16S_rrsC_1000_a 16S_rrsC 16S_rrsC_1012_t 16S_rrsC 16S_rrsC_1018_g 16S_rrsC 16S_rrsC_1021_g 16S_rrsC 16S_rrsC_1023_c 16S_rrsC 16S_rrsC_1029_a 16S_rrsC 16S_rrsC_1030_g 16S_rrsC 16S_rrsC_1031_c 16S_rrsC 16S_rrsC_1032_a 16S_rrsC 16S_rrsC_1037_t 16S_rrsC 16S_rrsC_1038_c 16S_rrsC 16S_rrsC_1040_c 16S_rrsC 16S_rrsC_1041_g 16S_rrsC 16S_rrsC_1046_a 16S_rrsC 16S_rrsC_1048_t 16S_rrsC 16S_rrsC_1053_g 16S_rrsC 16S_rrsC_1059_a 16S_rrsC 16S_rrsC_1064_t 16S_rrsC 16S_rrsC_1065_c 16S_rrsC 16S_rrsC_1069_t 16S_rrsC 16S_rrsC_1121_c 16S_rrsC 16S_rrsC_1135_g 16S_rrsC 16S_rrsC_1150_t 16S_rrsC 16S_rrsC_1176_a 16S_rrsC 16S_rrsC_1183_a 16S_rrsC 16S_rrsC_1188_t 16S_rrsC