# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_23 - 351 Mg_chelatase PF01078.16 207 0.00012 15.1 0.1 1 2 0.002 0.2 4.6 0.0 24 47 98 121 88 140 0.84 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 3_23 - 351 Mg_chelatase PF01078.16 207 0.00012 15.1 0.1 2 2 0.00013 0.013 8.5 0.0 88 143 142 199 134 239 0.77 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 2_18 - 233 Mg_chelatase PF01078.16 207 0.0014 11.7 0.1 1 1 2.5e-05 0.0026 10.8 0.0 24 51 29 56 6 83 0.77 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_71 - 792 ATP_bind_3 PF01171.15 182 0.0018 11.7 0.3 1 1 2.8e-05 0.0058 10.0 0.1 2 40 77 115 76 145 0.78 # 70290 # 72665 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 1_20 - 418 MipZ PF09140.6 261 8.3e-10 32.0 0.1 1 2 8.1e-07 0.00017 14.7 0.1 2 26 116 140 115 161 0.75 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_20 - 418 MipZ PF09140.6 261 8.3e-10 32.0 0.1 2 2 9.4e-07 0.00019 14.4 0.0 71 126 230 287 215 297 0.75 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_124 - 468 GIDA PF01134.17 392 2.5e-05 17.1 3.7 1 3 3.3e-07 6.7e-05 15.8 0.2 1 29 3 35 3 52 0.80 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 GIDA PF01134.17 392 2.5e-05 17.1 3.7 2 3 0.02 4.2 -0.0 0.0 133 159 165 191 141 225 0.80 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 GIDA PF01134.17 392 2.5e-05 17.1 3.7 3 3 0.027 5.4 -0.4 0.9 331 388 390 458 388 462 0.64 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 3_25 - 126 SSB PF00436.20 104 0.0003 14.6 0.1 1 2 8.1e-06 0.0017 12.2 0.1 2 84 8 88 7 94 0.79 # 20669 # 21046 # -1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 3_25 - 126 SSB PF00436.20 104 0.0003 14.6 0.1 2 2 0.027 5.6 0.9 0.0 42 60 91 109 85 112 0.83 # 20669 # 21046 # -1 # ID=3_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.373 3_27 - 595 UvrD_C_2 PF13538.1 104 4.9e-12 39.9 0.0 1 1 5.8e-14 1.2e-11 38.7 0.0 47 103 496 562 454 563 0.79 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_124 - 468 Pyr_redox_2 PF07992.9 201 1.3e-08 28.8 0.1 1 1 3.2e-10 6.6e-08 26.6 0.1 1 120 3 182 3 427 0.88 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 3_23 - 351 AAA_2 PF07724.9 171 5.7e-07 23.5 0.0 1 1 5.8e-09 1.2e-06 22.5 0.0 5 83 98 177 96 184 0.71 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_108 - 695 DUF87 PF01935.12 229 0.00023 14.9 0.0 1 1 2.5e-06 0.00052 13.8 0.0 25 68 200 242 185 281 0.87 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_47 - 559 MetW PF07021.7 193 4.4e-05 16.8 0.0 1 1 4.2e-07 8.7e-05 15.9 0.0 7 90 412 495 409 506 0.84 # 48442 # 50118 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 2_19 - 264 AAA_22 PF13401.1 131 2.1e-05 18.6 0.5 1 1 8.4e-06 0.00043 14.4 0.5 8 99 52 195 48 226 0.53 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 1_108 - 695 AAA_22 PF13401.1 131 0.00012 16.1 0.1 1 2 0.00015 0.0076 10.3 0.0 5 24 199 218 198 296 0.70 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_108 - 695 AAA_22 PF13401.1 131 0.00012 16.1 0.1 2 2 0.027 1.4 3.0 0.0 87 124 503 537 458 545 0.76 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 2_18 - 233 AAA_22 PF13401.1 131 0.00014 15.9 0.1 1 2 6e-05 0.0031 11.6 0.1 5 25 28 48 24 71 0.90 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_18 - 233 AAA_22 PF13401.1 131 0.00014 15.9 0.1 2 2 0.045 2.3 2.3 0.0 87 122 146 190 104 192 0.72 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 3_23 - 351 AAA_22 PF13401.1 131 0.00096 13.2 0.3 1 1 0.00011 0.0058 10.7 0.0 6 30 98 122 96 159 0.81 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 2_4 - 476 DNA_methylase PF00145.12 335 3.9e-75 246.9 0.0 1 1 2.9e-77 5.9e-75 246.3 0.0 1 331 92 453 92 456 0.89 # 2072 # 3499 # 1 # ID=2_4;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.492 2_18 - 233 AAA_15 PF13175.1 415 0.00015 14.8 0.0 1 1 2e-06 0.00021 14.3 0.0 20 49 22 68 8 89 0.81 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_19 - 264 AAA_15 PF13175.1 415 0.0013 11.6 0.0 1 1 1.8e-05 0.0019 11.2 0.0 8 43 34 75 25 148 0.73 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 3_23 - 351 AAA_17 PF13207.1 121 0.00081 14.2 0.0 1 1 2.4e-05 0.0024 12.6 0.0 2 46 99 141 98 195 0.74 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 2_19 - 264 AAA_17 PF13207.1 121 0.0016 13.2 0.3 1 1 4.8e-05 0.0049 11.6 0.3 3 17 52 66 51 249 0.92 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_18 - 233 AAA_21 PF13304.1 303 3.2e-11 37.6 0.0 1 1 6e-11 6.1e-09 30.1 0.0 1 287 29 181 29 190 0.81 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_19 - 264 AAA_21 PF13304.1 303 1.6e-10 35.3 0.5 1 2 2.2e-07 2.3e-05 18.4 0.0 3 19 52 68 52 91 0.86 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_19 - 264 AAA_21 PF13304.1 303 1.6e-10 35.3 0.5 2 2 1.9e-06 0.00019 15.4 0.1 165 283 118 208 95 219 0.78 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 1_20 - 418 ArsA_ATPase PF02374.10 305 1.9e-06 21.0 0.7 1 2 0.026 5.4 -0.2 0.0 214 274 14 76 6 84 0.76 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_20 - 418 ArsA_ATPase PF02374.10 305 1.9e-06 21.0 0.7 2 2 3.9e-07 8e-05 15.7 0.2 7 136 121 269 115 274 0.63 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 3_27 - 595 PhoH PF02562.11 205 4.3e-05 16.7 0.1 1 2 5.4e-05 0.011 8.9 0.0 6 61 5 61 2 78 0.77 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 PhoH PF02562.11 205 4.3e-05 16.7 0.1 2 2 0.0006 0.12 5.4 0.0 118 173 188 242 155 258 0.74 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_124 - 468 NAD_binding_8 PF13450.1 68 7.7e-07 23.0 0.0 1 1 1e-08 2.1e-06 21.6 0.0 1 49 6 56 6 74 0.80 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 FAD_binding_3 PF01494.14 356 9e-06 18.8 0.1 1 1 1.1e-07 2.3e-05 17.5 0.1 2 162 2 174 1 208 0.66 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 2_19 - 264 SMC_N PF02463.14 220 5.1e-10 32.8 0.0 1 1 1.3e-11 1.4e-09 31.4 0.0 6 213 31 237 25 243 0.77 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_18 - 233 SMC_N PF02463.14 220 0.0016 11.6 0.1 1 1 3.5e-05 0.0036 10.4 0.1 25 75 28 75 20 182 0.86 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_71 - 792 TIGR02432 TIGR02432 189 0.00048 13.7 0.4 1 1 5.3e-06 0.0011 12.5 0.1 2 40 77 115 76 146 0.72 # 70290 # 72665 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 1_20 - 418 Fer4_NifH PF00142.13 273 0.00078 12.6 0.1 1 1 8.1e-06 0.0017 11.5 0.0 7 59 122 177 116 207 0.77 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 2_19 - 264 Arch_ATPase PF01637.13 234 4.6e-05 17.1 0.0 1 1 6.2e-07 6.4e-05 16.6 0.0 21 118 49 142 36 219 0.75 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_18 - 233 Arch_ATPase PF01637.13 234 0.00071 13.2 0.0 1 1 1.1e-05 0.0011 12.5 0.0 16 39 23 46 19 76 0.91 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_18 - 233 AAA_16 PF13191.1 185 1.6e-07 25.4 0.0 1 1 2.8e-09 2.9e-07 24.6 0.0 14 82 18 98 14 206 0.60 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_19 - 264 AAA_16 PF13191.1 185 3.1e-05 17.9 0.7 1 1 8.4e-07 8.6e-05 16.5 0.7 17 158 40 190 32 256 0.51 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_19 - 264 AAA_23 PF13476.1 202 4.6e-07 24.2 0.1 1 1 7.7e-09 7.9e-07 23.5 0.1 2 40 30 69 29 179 0.75 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_18 - 233 AAA_23 PF13476.1 202 1.3e-05 19.5 0.1 1 1 2.1e-07 2.2e-05 18.8 0.1 11 40 18 48 2 54 0.79 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_19 - 264 AAA_13 PF13166.1 712 0.00084 11.7 0.0 1 1 1e-05 0.0011 11.4 0.0 23 105 55 152 46 170 0.64 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_8 - 407 AAA_13 PF13166.1 712 0.066 5.5 36.8 1 2 2.2e-05 0.0022 10.3 27.3 291 493 107 313 81 324 0.73 # 5414 # 6634 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.474 2_8 - 407 AAA_13 PF13166.1 712 0.066 5.5 36.8 2 2 0.041 4.2 -0.5 2.9 406 453 339 383 315 391 0.55 # 5414 # 6634 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.474 1_20 - 418 CbiA PF01656.18 195 2.1e-20 66.8 0.0 1 1 1.5e-22 3e-20 66.3 0.0 1 188 117 358 117 365 0.74 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_124 - 468 HI0933_like PF03486.9 409 9.2e-14 44.6 2.1 1 3 1.5e-08 3e-06 19.8 0.1 2 33 3 34 2 38 0.94 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 HI0933_like PF03486.9 409 9.2e-14 44.6 2.1 2 3 1e-09 2.1e-07 23.6 0.0 72 164 85 182 66 186 0.84 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 HI0933_like PF03486.9 409 9.2e-14 44.6 2.1 3 3 0.051 10 -1.7 0.2 376 388 416 428 399 452 0.71 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 2_19 - 264 AAA_29 PF13555.1 62 1.5e-05 18.4 0.0 1 1 2.9e-07 2.9e-05 17.5 0.0 26 44 51 69 35 84 0.80 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_18 - 233 AAA_29 PF13555.1 62 5.2e-05 16.7 0.1 1 1 9e-07 9.2e-05 15.9 0.1 17 44 22 48 15 59 0.78 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_124 - 468 FAD_binding_2 PF00890.19 417 4.9e-36 118.3 0.5 1 1 3e-38 6.2e-36 118.0 0.5 1 408 3 431 3 442 0.80 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 3_23 - 351 AAA PF00004.24 132 9.2e-05 16.6 0.0 1 1 2e-06 0.00021 15.4 0.0 1 73 99 177 99 215 0.69 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 2_19 - 264 AAA PF00004.24 132 0.00042 14.4 0.1 1 1 1.7e-05 0.0017 12.5 0.1 2 35 52 96 51 219 0.63 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0027 11.5 1.8 1 2 0.0059 1.2 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 4_1 - 139 Ribosomal_S8 PF00410.14 129 0.0027 11.5 1.8 2 2 0.00012 0.025 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=4_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 3_27 - 595 UvrD_C PF13361.1 351 4.6e-42 138.6 0.0 1 2 0.056 12 -0.9 0.0 216 294 10 84 3 85 0.74 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 UvrD_C PF13361.1 351 4.6e-42 138.6 0.0 2 2 8.7e-44 1.8e-41 136.6 0.0 2 348 254 564 253 567 0.89 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_71 - 792 PAPS_reduct PF01507.14 174 1.3e-08 28.7 0.0 1 1 1.3e-10 2.6e-08 27.8 0.0 3 149 78 263 76 267 0.73 # 70290 # 72665 # 1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.564 1_31 - 171 rRNA_methylase PF06962.7 140 0.00056 13.6 0.0 1 1 3.8e-06 0.00077 13.1 0.0 65 113 32 76 28 121 0.73 # 34803 # 35315 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.394 3_23 - 351 Sigma54_activat PF00158.21 168 2.2e-05 17.9 0.0 1 1 1.6e-06 0.00032 14.1 0.0 17 115 91 184 77 219 0.60 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_124 - 468 Pyr_redox_3 PF13738.1 203 1.6e-07 25.5 0.0 1 1 1.6e-08 3.4e-06 21.2 0.0 1 141 5 187 5 191 0.74 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_47 - 559 N6_Mtase PF02384.11 311 0.00011 15.3 0.0 1 1 9.6e-07 0.0002 14.4 0.0 76 138 433 493 400 512 0.87 # 48442 # 50118 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 2_18 - 233 DUF258 PF03193.11 161 4.3e-05 16.7 0.1 1 1 6.9e-07 7.1e-05 15.9 0.1 35 67 27 59 13 76 0.81 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_19 - 264 DUF258 PF03193.11 161 0.00037 13.6 0.0 1 1 5.3e-06 0.00055 13.1 0.0 27 66 39 79 18 149 0.75 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 1_108 - 695 TraG-D_C PF12696.2 128 4e-11 36.8 0.1 1 1 4.1e-13 8.4e-11 35.8 0.1 2 111 505 616 504 630 0.82 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_20 - 418 AAA_31 PF13614.1 157 2.3e-06 21.5 0.3 1 2 5.5e-06 0.0011 12.8 0.0 9 128 123 270 121 294 0.81 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_20 - 418 AAA_31 PF13614.1 157 2.3e-06 21.5 0.3 2 2 0.00093 0.19 5.6 0.1 14 116 299 408 284 411 0.85 # 20244 # 21497 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.431 1_47 - 559 Methyltransf_26 PF13659.1 117 1.5e-10 35.1 0.1 1 1 3.3e-12 3.4e-10 33.9 0.1 1 116 421 517 421 518 0.83 # 48442 # 50118 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 2_22 - 424 Methyltransf_26 PF13659.1 117 0.0013 12.7 0.3 1 1 4.8e-05 0.0049 10.8 0.1 15 81 257 323 254 372 0.80 # 16905 # 18176 # -1 # ID=2_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.529 3_27 - 595 AAA_30 PF13604.1 196 1.2e-05 18.9 0.0 1 3 1.1e-05 0.0022 11.5 0.0 4 66 6 66 4 84 0.76 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 AAA_30 PF13604.1 196 1.2e-05 18.9 0.0 2 3 0.0031 0.63 3.5 0.0 95 133 191 228 168 287 0.77 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 AAA_30 PF13604.1 196 1.2e-05 18.9 0.0 3 3 0.065 13 -0.9 0.0 64 88 409 432 399 443 0.79 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_108 - 695 FtsK_SpoIIIE PF01580.13 205 1.5e-06 21.7 0.1 1 2 1.5e-06 0.00031 14.1 0.0 23 80 182 236 168 243 0.82 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_108 - 695 FtsK_SpoIIIE PF01580.13 205 1.5e-06 21.7 0.1 2 2 0.001 0.21 4.9 0.0 170 204 511 542 502 543 0.81 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_47 - 559 MTS PF05175.9 170 6.1e-07 22.9 0.0 1 1 5.2e-09 1.1e-06 22.1 0.0 60 144 444 520 433 543 0.70 # 48442 # 50118 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 1_124 - 468 Lycopene_cycl PF05834.7 374 1.7e-05 17.8 0.0 1 2 5.6e-07 0.00011 15.0 0.0 1 41 3 41 3 77 0.89 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 Lycopene_cycl PF05834.7 374 1.7e-05 17.8 0.0 2 2 0.018 3.6 0.2 0.0 102 143 144 186 132 198 0.82 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 2_18 - 233 ABC_tran PF00005.22 137 2.7e-35 115.6 0.0 1 1 5e-37 3.4e-35 115.2 0.0 1 136 17 161 17 162 0.90 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_19 - 264 ABC_tran PF00005.22 137 4.6e-30 98.6 0.1 1 1 1.2e-31 8.3e-30 97.8 0.1 1 136 38 192 38 193 0.96 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 3_23 - 351 ABC_tran PF00005.22 137 0.00034 14.8 0.0 1 1 1.1e-05 0.00077 13.7 0.0 14 117 99 225 95 229 0.56 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 2_19 - 264 ATP-synt_ab PF00006.20 215 0.00012 15.6 0.1 1 1 1.7e-06 0.00035 14.0 0.1 6 60 39 149 36 255 0.71 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 3_27 - 595 AAA_19 PF13245.1 76 8.5e-08 25.8 0.0 1 1 2.6e-09 2.6e-07 24.3 0.0 4 74 13 85 9 87 0.76 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 2_19 - 264 AAA_19 PF13245.1 76 0.0053 10.5 1.6 1 2 0.00035 0.036 7.8 0.5 13 31 52 68 41 73 0.83 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 2_19 - 264 AAA_19 PF13245.1 76 0.0053 10.5 1.6 2 2 0.097 9.9 -0.0 0.0 19 48 191 219 178 244 0.71 # 13377 # 14168 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.514 1_28 - 894 AAA_10 PF12846.2 304 1.7e-67 221.9 0.1 1 1 3.8e-69 2.6e-67 221.3 0.1 1 304 456 813 456 813 0.95 # 30295 # 32976 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_108 - 695 AAA_10 PF12846.2 304 1.4e-17 57.9 0.0 1 1 5.2e-19 3.6e-17 56.6 0.0 2 300 199 582 198 586 0.82 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 3_27 - 595 AAA_10 PF12846.2 304 0.00057 13.3 0.0 1 1 2.3e-05 0.0016 11.8 0.0 1 22 16 37 16 47 0.84 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 AAA_12 PF13087.1 200 9.1e-09 28.9 0.1 1 3 0.00013 0.026 7.8 0.0 99 152 34 86 15 95 0.84 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 AAA_12 PF13087.1 200 9.1e-09 28.9 0.1 2 3 0.0048 0.98 2.6 0.0 5 38 240 273 237 377 0.81 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 AAA_12 PF13087.1 200 9.1e-09 28.9 0.1 3 3 1.4e-06 0.0003 14.1 0.0 143 195 499 562 415 567 0.82 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_124 - 468 FAD_oxidored PF12831.2 428 1.2e-10 34.9 0.2 1 1 9.4e-13 1.9e-10 34.2 0.2 1 139 3 173 3 181 0.58 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 DAO PF01266.19 358 2.2e-18 60.1 0.1 1 1 1.3e-18 2.7e-16 53.2 0.1 1 202 3 183 3 193 0.84 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 3_27 - 595 ResIII PF04851.10 184 0.00024 14.9 0.4 1 1 4.3e-06 0.00088 13.0 0.0 19 77 12 77 5 97 0.74 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 Viral_helicase1 PF01443.13 234 3.8e-07 23.7 0.1 1 3 0.0042 0.87 2.9 0.0 2 21 20 39 19 79 0.77 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 Viral_helicase1 PF01443.13 234 3.8e-07 23.7 0.1 2 3 0.022 4.5 0.6 0.0 40 135 167 261 142 290 0.69 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 Viral_helicase1 PF01443.13 234 3.8e-07 23.7 0.1 3 3 3.6e-07 7.4e-05 16.2 0.0 181 233 504 563 417 564 0.88 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_23 - 351 TIP49 PF06068.8 398 0.00073 12.2 0.0 1 2 9.1e-06 0.0019 10.8 0.0 40 82 87 128 80 144 0.79 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 3_23 - 351 TIP49 PF06068.8 398 0.00073 12.2 0.0 2 2 0.088 18 -2.3 0.0 336 363 234 261 223 278 0.84 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 3_27 - 595 DEAD PF00270.24 169 0.00022 14.7 0.2 1 1 4.9e-06 0.001 12.5 0.2 5 78 9 80 5 218 0.62 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 1_124 - 468 Pyr_redox PF00070.22 80 1.8e-07 25.5 0.0 1 2 6.3e-07 0.00013 16.3 0.0 2 33 4 35 3 53 0.87 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 Pyr_redox PF00070.22 80 1.8e-07 25.5 0.0 2 2 0.0012 0.24 5.8 0.0 44 70 132 158 116 166 0.80 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_108 - 695 DUF853 PF05872.7 504 0.00014 14.2 0.0 1 2 1.9e-06 0.00039 12.7 0.0 10 60 187 237 179 240 0.86 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_108 - 695 DUF853 PF05872.7 504 0.00014 14.2 0.0 2 2 0.071 15 -2.4 0.0 257 279 503 525 495 556 0.71 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_47 - 559 Methyltransf_27 PF13708.1 194 3.8e-58 190.1 0.1 1 1 8.6e-60 5.9e-58 189.5 0.1 2 194 93 296 92 296 0.95 # 48442 # 50118 # 1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.506 2_10 - 152 Methyltransf_27 PF13708.1 194 1.8e-17 57.4 0.0 1 1 3.3e-19 2.3e-17 57.1 0.0 3 82 72 150 70 151 0.97 # 6994 # 7449 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.504 2_9 - 63 Methyltransf_27 PF13708.1 194 1.6e-08 28.2 0.0 1 1 2.4e-10 1.6e-08 28.2 0.0 152 194 16 58 4 58 0.88 # 6637 # 6825 # -1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.471 1_108 - 695 TrwB_AAD_bind PF10412.4 386 1.7e-15 50.4 0.1 1 2 7.8e-07 0.00016 14.3 0.0 16 53 199 236 189 341 0.85 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 1_108 - 695 TrwB_AAD_bind PF10412.4 386 1.7e-15 50.4 0.1 2 2 1e-12 2e-10 33.7 0.0 183 375 433 640 403 647 0.70 # 93267 # 95351 # -1 # ID=1_108;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.452 3_23 - 351 Sigma54_activ_2 PF14532.1 138 0.00056 13.9 0.0 1 1 6e-06 0.0012 12.8 0.0 21 95 96 188 79 219 0.73 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 1_44 - 275 MethyltransfD12 PF02086.10 260 1.1e-53 176.3 0.0 1 1 5.8e-56 1.2e-53 176.1 0.0 1 259 10 255 10 256 0.93 # 45837 # 46661 # -1 # ID=1_44;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_18 - 233 UPF0079 PF02367.12 123 0.0017 11.9 0.0 1 1 1.4e-05 0.0028 11.2 0.0 12 37 24 49 15 82 0.89 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_124 - 468 AlaDh_PNT_C PF01262.16 168 3.6e-05 17.3 0.0 1 2 9.4e-07 0.00019 14.9 0.0 23 69 4 50 2 91 0.84 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 1_124 - 468 AlaDh_PNT_C PF01262.16 168 3.6e-05 17.3 0.0 2 2 0.087 18 -1.2 0.0 14 44 112 143 107 146 0.77 # 109417 # 110820 # -1 # ID=1_124;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.588 3_27 - 595 UvrD-helicase PF00580.16 315 4.1e-30 99.0 7.3 1 3 7.7e-17 1.6e-14 47.8 0.1 2 106 5 92 4 119 0.87 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 UvrD-helicase PF00580.16 315 4.1e-30 99.0 7.3 2 3 3.9e-18 8e-16 52.1 0.7 210 314 147 248 111 249 0.84 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 3_27 - 595 UvrD-helicase PF00580.16 315 4.1e-30 99.0 7.3 3 3 0.0086 1.8 1.7 0.1 114 190 418 494 367 583 0.74 # 22378 # 24162 # -1 # ID=3_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.442 2_18 - 233 NACHT PF05729.7 166 0.0005 13.7 0.3 1 1 4.2e-06 0.00085 12.9 0.3 3 21 30 48 28 57 0.88 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_18 - 233 AAA_25 PF13481.1 194 6.4e-05 16.3 0.1 1 2 9.7e-07 0.0002 14.7 0.0 31 55 25 49 15 81 0.83 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 2_18 - 233 AAA_25 PF13481.1 194 6.4e-05 16.3 0.1 2 2 0.082 17 -1.4 0.0 166 186 170 190 142 193 0.59 # 12676 # 13374 # -1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 3_23 - 351 AAA_5 PF07728.9 139 9.6e-39 126.2 0.0 1 1 7e-41 1.4e-38 125.6 0.0 1 139 98 238 98 238 0.97 # 18510 # 19562 # -1 # ID=3_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.425 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6eab0ea8-3846-40bc-a198-074b6ebbb7c1 # Target file: checkm_output/bins/pn97/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn97/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6eab0ea8-3846-40bc-a198-074b6ebbb7c1 checkm_output/bins/pn97/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:51 2020 # [ok]