# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_60 - 1014 UPF0020 PF01170.13 180 0.00022 14.0 0.0 1 2 0.0042 0.49 3.0 0.0 28 50 769 791 766 829 0.87 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_60 - 1014 UPF0020 PF01170.13 180 0.00022 14.0 0.0 2 2 0.00011 0.013 8.2 0.0 86 116 896 926 891 932 0.91 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 2_2 - 495 Terminase_6 PF03237.10 384 1.5e-06 20.3 0.1 1 1 2.7e-08 3.2e-06 19.2 0.1 6 317 58 380 55 427 0.75 # 564 # 2048 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_51 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 1 2 4.6e-05 0.0054 8.9 0.0 1 51 109 164 109 187 0.77 # 51112 # 52308 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_51 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 2 2 1.4e-07 1.7e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 51112 # 52308 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_14 - 163 SSB PF00436.20 104 4.2e-43 138.7 0.3 1 1 4.6e-45 5.5e-43 138.3 0.3 1 100 6 109 6 113 0.96 # 16363 # 16851 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_60 - 1014 DNA_methylase PF00145.12 335 1.2e-32 106.4 0.0 1 5 3.2e-10 3.8e-08 25.9 0.0 5 71 8 78 6 81 0.94 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_60 - 1014 DNA_methylase PF00145.12 335 1.2e-32 106.4 0.0 2 5 1.9e-10 2.2e-08 26.6 0.0 71 119 419 476 415 486 0.90 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_60 - 1014 DNA_methylase PF00145.12 335 1.2e-32 106.4 0.0 3 5 1.1e-08 1.3e-06 20.8 0.2 136 161 533 558 528 583 0.86 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_60 - 1014 DNA_methylase PF00145.12 335 1.2e-32 106.4 0.0 4 5 7.3e-09 8.7e-07 21.4 0.0 266 310 623 667 574 674 0.64 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_60 - 1014 DNA_methylase PF00145.12 335 1.2e-32 106.4 0.0 5 5 0.0014 0.16 4.1 0.0 312 334 700 722 689 723 0.88 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_10 - 2256 Helicase_C PF00271.26 78 7.7e-09 28.5 0.0 1 1 1.6e-10 1.9e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 5780 # 12547 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_51 - 399 ArsA_ATPase PF02374.10 305 0.00052 12.2 0.0 1 1 1.2e-05 0.0014 10.8 0.0 4 52 111 166 108 255 0.74 # 51112 # 52308 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_21 - 640 AAA_13 PF13166.1 712 0.011 7.3 9.9 1 2 1.1e-05 0.0014 10.3 5.4 378 465 199 281 158 284 0.62 # 22247 # 24166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_21 - 640 AAA_13 PF13166.1 712 0.011 7.3 9.9 2 2 0.056 6.6 -1.9 0.1 369 398 564 593 528 634 0.49 # 22247 # 24166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_51 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 1.8e-22 2.2e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 51112 # 52308 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_64 - 455 KaiC PF06745.8 227 1.4e-06 20.7 0.0 1 1 2.9e-08 3.5e-06 19.4 0.0 4 66 185 253 183 277 0.87 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_30 - 279 HI0933_like PF03486.9 409 0.0012 10.4 0.0 1 1 1.5e-05 0.0018 9.9 0.0 60 124 27 90 19 109 0.80 # 30850 # 31686 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.459 1_10 - 2256 N6_Mtase PF02384.11 311 3.1e-10 32.7 0.0 1 1 3.3e-11 3.8e-09 29.1 0.0 93 249 145 291 73 296 0.76 # 5780 # 12547 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_51 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 1 2 0.0009 0.053 6.6 0.0 2 63 110 176 109 222 0.75 # 51112 # 52308 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_51 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 2 2 6e-06 0.00035 13.7 0.0 108 138 235 265 231 277 0.85 # 51112 # 52308 # -1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.456 1_64 - 455 AAA_31 PF13614.1 157 7.3e-05 15.9 0.0 1 1 2.9e-06 0.00017 14.7 0.0 5 43 210 249 208 260 0.89 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_64 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 1 3 0.088 10 -0.9 0.0 46 79 134 172 102 181 0.69 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_64 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 2 3 3.9e-05 0.0047 10.0 0.0 2 42 209 248 208 327 0.60 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_64 - 455 AAA_33 PF13671.1 143 0.00023 14.2 0.2 3 3 0.036 4.2 0.4 0.1 88 123 350 383 331 394 0.72 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_64 - 455 DnaB_C PF03796.10 259 1.6e-109 357.8 0.3 1 1 2e-111 2.4e-109 357.3 0.3 1 257 188 445 188 447 0.98 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_10 - 2256 Methyltransf_26 PF13659.1 117 3e-09 30.1 1.9 1 1 2.9e-10 1.7e-08 27.7 0.0 5 116 116 225 113 226 0.79 # 5780 # 12547 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_60 - 1014 Methyltransf_26 PF13659.1 117 1.9e-05 17.8 0.0 1 1 7.9e-07 4.7e-05 16.6 0.0 1 83 770 929 770 979 0.69 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 2_2 - 495 AAA_30 PF13604.1 196 3.3e-05 16.6 0.0 1 1 2.4e-06 0.00028 13.6 0.0 5 127 37 189 35 194 0.73 # 564 # 2048 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_64 - 455 FtsK_SpoIIIE PF01580.13 205 0.00037 13.1 0.2 1 2 8.6e-05 0.01 8.4 0.0 40 66 208 234 184 242 0.82 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_64 - 455 FtsK_SpoIIIE PF01580.13 205 0.00037 13.1 0.2 2 2 0.012 1.4 1.4 0.1 71 124 319 366 313 400 0.74 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_10 - 2256 Eco57I PF07669.6 106 4.7e-05 16.9 0.0 1 1 1.6e-06 0.00019 14.9 0.0 3 101 174 271 172 276 0.87 # 5780 # 12547 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_64 - 455 AAA_19 PF13245.1 76 0.001 12.0 0.0 1 1 2.5e-05 0.0029 10.5 0.0 10 48 206 241 199 264 0.82 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_2 - 132 Methyltransf_21 PF05050.7 167 0.0004 13.5 0.0 1 1 3.4e-06 0.0004 13.5 0.0 112 161 62 115 4 125 0.72 # 429 # 824 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.402 1_21 - 640 Kinesin-relat_1 PF12711.2 86 0.0022 11.5 4.6 1 2 0.004 0.48 4.1 0.5 8 42 196 230 191 236 0.81 # 22247 # 24166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_21 - 640 Kinesin-relat_1 PF12711.2 86 0.0022 11.5 4.6 2 2 0.00024 0.029 8.0 0.3 7 37 251 281 246 284 0.90 # 22247 # 24166 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 1_60 - 1014 MethyltransfD12 PF02086.10 260 3.3e-56 183.7 0.0 1 1 4.2e-58 4.9e-56 183.1 0.0 1 245 752 981 752 994 0.94 # 58259 # 61300 # 1 # ID=1_60;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.469 1_14 - 163 tRNA_anti-codon PF01336.20 75 0.00074 12.5 0.0 1 1 1e-05 0.0012 11.9 0.0 31 61 58 92 53 112 0.82 # 16363 # 16851 # 1 # ID=1_14;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_64 - 455 AAA_25 PF13481.1 194 9.4e-15 47.6 0.1 1 1 1.5e-16 1.8e-14 46.7 0.1 14 190 188 368 174 372 0.82 # 64521 # 65885 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.481 1_10 - 2256 SNF2_N PF00176.18 299 2.5e-18 59.0 0.0 1 1 5.1e-20 6e-18 57.7 0.0 27 293 849 1262 835 1268 0.86 # 5780 # 12547 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.522 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/f0575882-6ebf-4383-8600-2bb7c9e5da86 # Target file: checkm_output/bins/pn83/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn83/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/f0575882-6ebf-4383-8600-2bb7c9e5da86 checkm_output/bins/pn83/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:44 2020 # [ok]