# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_23 - 216 MipZ PF09140.6 261 4.2e-07 20.3 0.3 1 2 1.2e-07 3.4e-06 17.4 0.0 2 51 4 53 3 78 0.90 # 17331 # 17978 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.528 1_23 - 216 MipZ PF09140.6 261 4.2e-07 20.3 0.3 2 2 0.01 0.29 1.2 0.1 93 135 75 118 62 135 0.77 # 17331 # 17978 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.528 1_28 - 579 DUF87 PF01935.12 229 3.6e-06 18.0 0.0 1 1 4.2e-07 1.2e-05 16.3 0.0 8 62 174 227 168 273 0.88 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_13 - 915 AAA_22 PF13401.1 131 1.9e-05 15.9 0.0 1 2 6.5e-06 0.00018 12.8 0.0 6 37 536 575 531 602 0.75 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 915 AAA_22 PF13401.1 131 1.9e-05 15.9 0.0 2 2 0.059 1.6 -0.0 0.0 78 125 742 791 737 797 0.75 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 915 AAA_21 PF13304.1 303 2.5e-05 15.4 0.3 1 2 9.2e-06 0.00026 12.1 0.0 2 47 537 567 536 649 0.71 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 915 AAA_21 PF13304.1 303 2.5e-05 15.4 0.3 2 2 0.027 0.75 0.7 0.2 29 90 684 746 661 790 0.73 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 216 ArsA_ATPase PF02374.10 305 2.8e-06 17.6 0.6 1 2 4.2e-06 0.00012 12.3 0.3 5 33 7 35 3 40 0.84 # 17331 # 17978 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.528 1_23 - 216 ArsA_ATPase PF02374.10 305 2.8e-06 17.6 0.6 2 2 0.0019 0.052 3.6 0.0 117 152 72 106 63 161 0.65 # 17331 # 17978 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.528 1_5 - 371 T2SE PF00437.15 272 2.6e-51 165.1 0.0 1 2 1.6e-28 4.4e-27 85.7 0.0 7 170 18 201 12 210 0.94 # 1329 # 2441 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_5 - 371 T2SE PF00437.15 272 2.6e-51 165.1 0.0 2 2 3.5e-26 9.7e-25 78.0 0.0 146 240 207 308 203 341 0.92 # 1329 # 2441 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_13 - 915 SMC_N PF02463.14 220 0.00031 11.1 0.0 1 1 2.5e-05 0.00071 9.9 0.0 15 41 525 551 517 559 0.81 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 915 AAA_16 PF13191.1 185 0.0001 13.4 0.0 1 1 1.8e-05 0.00051 11.1 0.0 18 52 528 563 518 585 0.79 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 915 AAA_23 PF13476.1 202 1e-05 17.0 0.0 1 2 0.033 0.94 0.8 0.0 143 175 209 260 147 289 0.64 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 915 AAA_23 PF13476.1 202 1e-05 17.0 0.0 2 2 4.4e-06 0.00012 13.5 0.0 18 40 533 555 521 602 0.88 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_23 - 216 CbiA PF01656.18 195 1.4e-15 48.3 0.1 1 1 3.1e-16 8.7e-15 45.7 0.1 1 189 5 173 5 185 0.73 # 17331 # 17978 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.528 1_28 - 579 TraG-D_C PF12696.2 128 4.5e-10 30.6 0.0 1 1 2.7e-11 7.6e-10 29.9 0.0 2 97 399 496 398 525 0.75 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_5 - 371 ABC_tran PF00005.22 137 3.9e-05 15.1 0.0 1 1 4.5e-06 6.4e-05 14.4 0.0 7 36 156 185 153 269 0.79 # 1329 # 2441 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.464 1_13 - 915 ABC_tran PF00005.22 137 0.00017 13.1 0.0 1 1 2.8e-05 0.0004 11.8 0.0 13 37 536 560 526 580 0.87 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_13 - 915 AAA_10 PF12846.2 304 1.7e-34 110.7 0.0 1 1 2.4e-35 3.3e-34 109.7 0.0 2 292 535 822 534 829 0.87 # 7631 # 10375 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 1_28 - 579 AAA_10 PF12846.2 304 6.9e-10 29.9 0.0 1 1 1.6e-09 2.3e-08 24.9 0.0 6 297 194 477 189 481 0.71 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_26 - 158 Zot PF05707.7 193 0.00017 12.2 0.0 1 1 7.3e-06 0.00021 11.9 0.0 12 76 25 93 23 141 0.78 # 18692 # 19165 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.521 1_28 - 579 TrwB_AAD_bind PF10412.4 386 1.1e-12 38.3 0.0 1 2 8.4e-06 0.00024 10.9 0.0 11 52 185 226 181 234 0.88 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_28 - 579 TrwB_AAD_bind PF10412.4 386 1.1e-12 38.3 0.0 2 2 3.5e-10 9.8e-09 25.3 0.0 222 378 378 536 332 542 0.71 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_28 - 579 T4SS-DNA_transf PF02534.9 469 4.3e-13 39.6 0.1 1 3 0.0069 0.19 1.2 0.0 96 124 143 170 128 176 0.73 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_28 - 579 T4SS-DNA_transf PF02534.9 469 4.3e-13 39.6 0.1 2 3 1.6e-05 0.00045 9.9 0.0 43 84 186 231 167 234 0.82 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_28 - 579 T4SS-DNA_transf PF02534.9 469 4.3e-13 39.6 0.1 3 3 5.2e-10 1.5e-08 24.7 0.0 242 436 338 535 333 556 0.80 # 19962 # 21698 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.431 1_18 - 150 TIGR00922 TIGR00922 172 3.9e-07 20.8 0.0 1 1 2e-08 5.7e-07 20.3 0.0 27 101 21 97 4 113 0.78 # 11904 # 12353 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_12 - 236 ABC_tran_2 PF12848.2 85 0.0098 6.9 14.5 1 2 0.0013 0.037 5.1 1.3 23 72 41 90 32 97 0.73 # 6908 # 7615 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.487 1_12 - 236 ABC_tran_2 PF12848.2 85 0.0098 6.9 14.5 2 2 0.003 0.083 4.0 6.0 13 68 127 182 125 226 0.86 # 6908 # 7615 # -1 # ID=1_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.487 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c0123e89-aade-468c-a463-3d2e62907ad7 # Target file: checkm_output/bins/pn73/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn73/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c0123e89-aade-468c-a463-3d2e62907ad7 checkm_output/bins/pn73/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:33 2020 # [ok]