# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_50 - 402 MipZ PF09140.6 261 3.6e-06 18.4 0.0 1 2 0.0025 0.16 3.2 0.0 3 50 111 163 109 201 0.73 # 42712 # 43917 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_50 - 402 MipZ PF09140.6 261 3.6e-06 18.4 0.0 2 2 2.8e-06 0.00018 12.9 0.0 87 136 233 282 220 305 0.87 # 42712 # 43917 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_61 - 323 DUF87 PF01935.12 229 0.00038 12.6 0.2 1 3 5.2e-05 0.0033 9.5 0.0 26 52 43 69 40 73 0.85 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 DUF87 PF01935.12 229 0.00038 12.6 0.2 2 3 0.083 5.2 -1.0 0.0 135 194 79 139 68 151 0.68 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 DUF87 PF01935.12 229 0.00038 12.6 0.2 3 3 0.071 4.5 -0.8 0.0 125 195 202 299 177 308 0.57 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 NB-ARC PF00931.17 287 0.00025 12.2 0.3 1 1 5.9e-06 0.00037 11.6 0.3 8 104 29 126 22 144 0.74 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 AAA_22 PF13401.1 131 3.1e-16 52.0 0.3 1 1 1.1e-17 7.1e-16 50.8 0.3 3 129 39 170 36 172 0.77 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 PRK PF00485.13 194 0.00022 13.1 0.0 1 1 7.1e-06 0.00045 12.1 0.0 1 38 42 81 42 129 0.65 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 AAA_17 PF13207.1 121 8.1e-05 15.7 0.1 1 1 3e-06 0.00019 14.6 0.1 1 40 42 89 42 200 0.62 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 MobB PF03205.9 140 0.0002 13.3 0.1 1 1 1.1e-05 0.00071 11.6 0.0 2 31 42 70 41 86 0.78 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 T2SE PF00437.15 272 1.7e-06 19.3 0.7 1 1 1.3e-07 8.3e-06 17.1 0.7 110 161 22 72 6 137 0.81 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 Arch_ATPase PF01637.13 234 2.3e-05 16.4 0.2 1 1 8.6e-07 5.4e-05 15.2 0.2 8 135 30 142 27 164 0.68 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 AAA_16 PF13191.1 185 2.2e-11 36.3 1.2 1 1 1.4e-11 2.9e-10 32.7 0.3 22 179 38 153 24 162 0.76 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_43 - 748 AAA_16 PF13191.1 185 0.00011 14.4 0.0 1 1 2e-05 0.00041 12.6 0.0 21 55 182 216 179 248 0.85 # 35069 # 37312 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_40 - 1410 AAA_16 PF13191.1 185 0.00074 11.8 2.8 1 2 0.0027 0.058 5.6 0.0 23 46 983 1006 966 1011 0.82 # 30124 # 34353 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_40 - 1410 AAA_16 PF13191.1 185 0.00074 11.8 2.8 2 2 0.0053 0.11 4.7 0.1 51 120 1089 1181 1038 1247 0.71 # 30124 # 34353 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_61 - 323 AAA_18 PF13238.1 129 5.8e-05 15.7 0.0 1 1 1.7e-06 0.0001 14.9 0.0 1 23 43 90 43 139 0.67 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_56 - 372 AAA_13 PF13166.1 712 0.029 4.9 35.4 1 1 0.022 1.4 -0.6 35.3 274 453 75 260 41 364 0.69 # 46949 # 48064 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_50 - 402 CbiA PF01656.18 195 1.4e-18 59.2 0.0 1 1 4.6e-20 2.9e-18 58.2 0.0 1 141 111 291 111 328 0.75 # 42712 # 43917 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_61 - 323 KaiC PF06745.8 227 0.00013 13.4 0.1 1 1 4.3e-06 0.00027 12.3 0.1 12 43 33 63 27 153 0.79 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 AAA_14 PF13173.1 128 2.7e-06 19.6 0.0 1 1 1.8e-07 1.1e-05 17.6 0.0 2 96 40 164 39 191 0.62 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 AAA PF00004.24 132 1e-06 21.3 0.0 1 1 3.7e-08 2.3e-06 20.1 0.0 3 96 45 151 43 180 0.68 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_43 - 748 TraG-D_C PF12696.2 128 5.5e-21 67.0 0.0 1 1 4.5e-22 2.8e-20 64.8 0.0 1 127 419 541 419 542 0.87 # 35069 # 37312 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_50 - 402 AAA_31 PF13614.1 157 0.00028 13.1 0.1 1 2 0.071 4.5 -0.6 0.0 12 61 120 174 110 209 0.55 # 42712 # 43917 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_50 - 402 AAA_31 PF13614.1 157 0.00028 13.1 0.1 2 2 3.1e-05 0.002 10.3 0.0 108 147 235 273 231 279 0.86 # 42712 # 43917 # -1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_61 - 323 AAA_33 PF13671.1 143 0.0001 14.5 0.0 1 1 3.7e-06 0.00023 13.3 0.0 1 45 42 100 42 132 0.60 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_40 - 1410 AAA_30 PF13604.1 196 3.9e-45 146.1 13.6 1 2 2.4e-06 7.4e-05 14.6 1.7 8 144 420 548 418 559 0.81 # 30124 # 34353 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_40 - 1410 AAA_30 PF13604.1 196 3.9e-45 146.1 13.6 2 2 4.2e-44 1.3e-42 137.8 0.7 1 187 967 1156 967 1161 0.93 # 30124 # 34353 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_61 - 323 AAA_30 PF13604.1 196 0.00011 14.1 0.4 1 1 1.1e-05 0.00034 12.5 0.4 15 128 38 164 27 169 0.55 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_56 - 372 AAA_27 PF13514.1 1111 0.089 2.6 60.9 1 2 0.0027 0.17 1.6 40.5 630 830 68 253 47 256 0.78 # 46949 # 48064 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_56 - 372 AAA_27 PF13514.1 1111 0.089 2.6 60.9 2 2 0.0039 0.25 1.1 30.3 239 400 203 361 190 369 0.71 # 46949 # 48064 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_61 - 323 ABC_tran PF00005.22 137 4.5e-06 19.3 0.1 1 1 1.4e-07 8.7e-06 18.4 0.1 2 90 31 120 30 159 0.75 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_40 - 1410 AAA_19 PF13245.1 76 2.3e-07 22.8 1.4 1 1 2e-08 6.4e-07 21.4 0.2 7 76 980 1046 973 1046 0.76 # 30124 # 34353 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_61 - 323 AAA_19 PF13245.1 76 4.1e-05 15.6 0.3 1 1 6.6e-06 0.00021 13.3 0.1 6 37 36 67 32 119 0.75 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_43 - 748 AAA_10 PF12846.2 304 5.2e-07 21.6 0.0 1 1 6.6e-07 2.1e-05 16.3 0.0 3 295 187 493 186 498 0.54 # 35069 # 37312 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_61 - 323 AAA_10 PF12846.2 304 6.1e-07 21.3 0.1 1 1 3.6e-06 0.00011 13.9 0.1 3 37 42 80 40 315 0.83 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 ResIII PF04851.10 184 6.3e-06 18.4 0.2 1 2 2e-05 0.0013 10.8 0.3 29 100 44 109 20 117 0.72 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 ResIII PF04851.10 184 6.3e-06 18.4 0.2 2 2 0.00043 0.027 6.5 0.0 129 162 107 140 84 153 0.64 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_56 - 372 DUF3584 PF12128.3 1201 0.023 4.2 58.8 1 1 0.0012 0.076 2.4 58.5 270 533 77 352 65 366 0.55 # 46949 # 48064 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_60 - 555 PPK2 PF03976.9 229 0.00025 12.6 0.5 1 2 0.0065 0.41 2.1 0.0 150 181 152 183 145 193 0.83 # 50957 # 52621 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_60 - 555 PPK2 PF03976.9 229 0.00025 12.6 0.5 2 2 7.5e-05 0.0048 8.4 0.1 42 122 283 366 274 374 0.84 # 50957 # 52621 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.557 1_61 - 323 DUF2075 PF09848.4 352 1.1e-06 20.0 0.1 1 1 2.6e-08 1.6e-06 19.5 0.1 2 97 41 138 40 165 0.71 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_43 - 748 TrwB_AAD_bind PF10412.4 386 1.3e-145 477.0 0.0 1 1 5.1e-147 1.6e-145 476.7 0.0 2 386 172 561 171 561 0.99 # 35069 # 37312 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_61 - 323 TrwB_AAD_bind PF10412.4 386 8.9e-05 13.4 0.5 1 3 3.3e-05 0.001 9.9 0.0 14 44 39 69 35 76 0.83 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 TrwB_AAD_bind PF10412.4 386 8.9e-05 13.4 0.5 2 3 0.042 1.3 -0.3 0.0 234 275 115 158 112 169 0.78 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 TrwB_AAD_bind PF10412.4 386 8.9e-05 13.4 0.5 3 3 0.073 2.3 -1.1 0.0 128 182 251 306 240 311 0.71 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_40 - 1410 AAA_11 PF13086.1 236 9.1e-05 14.3 0.0 1 1 6.1e-06 0.00039 12.3 0.0 2 75 968 1038 967 1058 0.79 # 30124 # 34353 # -1 # ID=1_40;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.610 1_43 - 748 T4SS-DNA_transf PF02534.9 469 3.4e-12 37.8 0.0 1 1 7.6e-14 4.8e-12 37.3 0.0 270 392 388 506 262 543 0.85 # 35069 # 37312 # -1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.545 1_61 - 323 PIF1 PF05970.9 364 1.8e-05 16.0 0.0 1 1 6.3e-07 4e-05 14.9 0.0 7 127 27 149 23 167 0.68 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 UPF0079 PF02367.12 123 7.3e-05 14.7 0.0 1 1 2.2e-06 0.00014 13.8 0.0 3 45 28 70 26 114 0.84 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_23 - 129 BOF PF04076.8 103 4.1e-44 140.9 0.7 1 1 7.9e-46 5e-44 140.7 0.7 2 102 25 125 24 126 0.98 # 15999 # 16385 # -1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.457 1_61 - 323 NACHT PF05729.7 166 0.0003 12.7 0.2 1 1 1.2e-05 0.00073 11.5 0.2 1 28 41 68 41 141 0.77 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 1_61 - 323 AAA_5 PF07728.9 139 5.2e-05 15.3 0.2 1 1 7e-06 0.00044 12.2 0.2 5 90 46 149 43 152 0.85 # 52611 # 53579 # 1 # ID=1_61;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.541 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/30ec60b3-e13f-4280-ba47-ddcc33bd31b0 # Target file: checkm_output/bins/pn70/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn70/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/30ec60b3-e13f-4280-ba47-ddcc33bd31b0 checkm_output/bins/pn70/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:34 2020 # [ok]