# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 1218 UPF0020 PF01170.13 180 2.9e-09 28.7 0.0 1 2 1.9e-08 1e-06 20.5 0.0 31 75 307 360 300 368 0.78 # 20483 # 24136 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.425 1_20 - 1218 UPF0020 PF01170.13 180 2.9e-09 28.7 0.0 2 2 0.00066 0.036 5.7 0.0 90 128 491 525 475 552 0.66 # 20483 # 24136 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.425 1_22 - 692 IstB_IS21 PF01695.12 178 7.7e-05 14.2 0.0 1 1 3.1e-06 0.00017 13.1 0.0 41 63 227 249 210 252 0.86 # 26810 # 28885 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_3 - 402 MipZ PF09140.6 261 1e-06 20.0 0.0 1 2 0.0027 0.14 3.1 0.0 3 50 111 163 109 193 0.73 # 2242 # 3447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_3 - 402 MipZ PF09140.6 261 1e-06 20.0 0.0 2 2 8.7e-07 4.7e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 2242 # 3447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_22 - 692 ChlI PF13541.1 121 1.3e-06 20.1 0.2 1 1 7.6e-08 4.1e-06 18.4 0.0 62 120 598 656 570 657 0.89 # 26810 # 28885 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_18 - 1226 KAP_NTPase PF07693.9 325 4.8e-05 14.4 0.0 1 1 3.2e-06 0.00017 12.6 0.0 16 70 63 151 47 202 0.81 # 15010 # 18687 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_18 - 1226 AAA_17 PF13207.1 121 0.035 7.0 6.6 1 1 0.00018 0.0097 8.8 0.3 2 114 70 184 70 248 0.59 # 15010 # 18687 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_18 - 1226 AAA_21 PF13304.1 303 0.062 5.2 10.7 1 2 1.3e-05 0.00072 11.5 0.9 9 170 77 203 77 246 0.52 # 15010 # 18687 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_18 - 1226 AAA_21 PF13304.1 303 0.062 5.2 10.7 2 2 0.086 4.7 -1.0 0.7 108 195 489 575 453 605 0.63 # 15010 # 18687 # 1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_3 - 402 CbiA PF01656.18 195 8.2e-19 59.8 0.0 1 1 2.8e-20 1.5e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 2242 # 3447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 3_1 - 139 Ribosomal_S8 PF00410.14 129 0.00071 11.5 1.8 1 2 0.0059 0.32 2.9 0.1 41 73 2 29 1 35 0.56 # 78 # 494 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 3_1 - 139 Ribosomal_S8 PF00410.14 129 0.00071 11.5 1.8 2 2 0.00012 0.0066 8.4 0.1 50 87 90 128 50 135 0.79 # 78 # 494 # -1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.357 1_20 - 1218 N6_Mtase PF02384.11 311 6.2e-17 53.6 0.0 1 2 6.5e-08 3.5e-06 18.3 0.0 40 102 299 371 262 388 0.81 # 20483 # 24136 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.425 1_20 - 1218 N6_Mtase PF02384.11 311 6.2e-17 53.6 0.0 2 2 2.4e-12 1.3e-10 32.8 0.0 122 234 500 610 467 649 0.80 # 20483 # 24136 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.425 1_3 - 402 AAA_31 PF13614.1 157 5.1e-05 15.3 0.0 1 1 5.5e-06 0.00029 12.8 0.0 108 147 235 273 230 279 0.86 # 2242 # 3447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_20 - 1218 Methyltransf_26 PF13659.1 117 6e-16 50.6 0.0 1 1 4.4e-17 2.4e-15 48.7 0.0 3 116 307 561 305 561 0.71 # 20483 # 24136 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.425 1_22 - 692 Lon_C PF05362.8 205 3.7e-17 54.3 0.0 1 1 1.4e-18 7.3e-17 53.3 0.0 44 200 529 686 505 690 0.86 # 26810 # 28885 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.447 1_20 - 1218 Eco57I PF07669.6 106 1.2e-10 33.8 0.1 1 1 1.1e-11 6.1e-10 31.5 0.1 2 99 503 605 502 610 0.84 # 20483 # 24136 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.425 1_20 - 1218 Methyltransf_31 PF13847.1 152 6.2e-05 14.7 0.0 1 1 2.9e-06 0.00016 13.3 0.0 3 38 304 356 302 362 0.67 # 20483 # 24136 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.425 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/880aec7d-06f1-425b-9153-e3f2697d6cf9 # Target file: checkm_output/bins/pn67/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn67/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/880aec7d-06f1-425b-9153-e3f2697d6cf9 checkm_output/bins/pn67/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:31 2020 # [ok]