# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_30 - 228 UPF0020 PF01170.13 180 1.6e-05 17.7 0.0 1 2 0.00031 0.036 6.7 0.0 103 119 17 33 4 88 0.73 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 228 UPF0020 PF01170.13 180 1.6e-05 17.7 0.0 2 2 6.2e-05 0.0073 9.0 0.0 28 54 163 189 158 221 0.67 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_22 - 215 MipZ PF09140.6 261 2.8e-08 26.2 2.3 1 2 0.0008 0.096 4.8 0.5 7 25 8 26 2 38 0.71 # 17261 # 17905 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_22 - 215 MipZ PF09140.6 261 2.8e-08 26.2 2.3 2 2 9e-09 1.1e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 17261 # 17905 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_79 - 383 DUF87 PF01935.12 229 0.00073 12.5 0.0 1 1 1.1e-05 0.0013 11.7 0.0 28 56 162 191 161 192 0.88 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_79 - 383 AAA_22 PF13401.1 131 1.2e-05 18.6 0.0 1 1 4.9e-07 2.9e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_90 - 518 AAA_22 PF13401.1 131 0.00029 14.1 0.0 1 1 1.3e-05 0.00076 12.8 0.0 6 28 227 249 222 330 0.77 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 ATP_bind_1 PF03029.12 238 5.5e-05 15.9 0.0 1 1 7.2e-07 8.6e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_30 - 228 N6_N4_Mtase PF01555.13 231 7.5e-37 120.1 0.0 1 2 1.2e-15 1.4e-13 44.0 0.0 1 114 21 124 21 137 0.89 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 228 N6_N4_Mtase PF01555.13 231 7.5e-37 120.1 0.0 2 2 5.4e-25 6.4e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_90 - 518 AAA_17 PF13207.1 121 2e-05 18.6 0.3 1 1 2.1e-06 0.00012 16.0 0.0 1 24 227 255 227 345 0.72 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 AAA_17 PF13207.1 121 2.2e-05 18.4 0.1 1 2 4.7e-06 0.00028 14.9 0.0 3 47 161 208 161 251 0.76 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_79 - 383 AAA_17 PF13207.1 121 2.2e-05 18.4 0.1 2 2 0.086 5.1 1.1 0.1 24 113 332 363 274 374 0.60 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_79 - 383 MobB PF03205.9 140 2.1e-05 17.4 0.0 1 2 0.016 1.9 1.4 0.0 14 60 61 108 61 132 0.88 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_79 - 383 MobB PF03205.9 140 2.1e-05 17.4 0.0 2 2 3.1e-06 0.00037 13.4 0.0 5 26 162 183 160 193 0.90 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_90 - 518 T2SE PF00437.15 272 2.8e-41 134.3 0.1 1 1 9.6e-43 5.7e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 T2SE PF00437.15 272 9.6e-36 116.2 0.0 1 1 2.4e-37 1.4e-35 115.6 0.0 120 269 149 306 126 309 0.88 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_90 - 518 G-alpha PF00503.15 389 0.00071 11.4 0.0 1 2 0.05 6 -1.5 0.0 234 271 70 112 29 117 0.78 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_90 - 518 G-alpha PF00503.15 389 0.00071 11.4 0.0 2 2 1.9e-05 0.0022 9.8 0.0 58 87 225 254 214 325 0.84 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_22 - 215 VirC1 PF07015.6 231 0.00048 12.4 0.0 1 2 0.00073 0.087 5.0 0.0 3 29 3 29 1 36 0.81 # 17261 # 17905 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_22 - 215 VirC1 PF07015.6 231 0.00048 12.4 0.0 2 2 0.00052 0.062 5.5 0.0 87 190 77 181 59 194 0.70 # 17261 # 17905 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_90 - 518 AAA_16 PF13191.1 185 0.0001 15.5 0.0 1 1 6.4e-06 0.00038 13.6 0.0 8 51 213 252 212 301 0.78 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 AAA_16 PF13191.1 185 0.00035 13.7 0.0 1 1 1.2e-05 0.00073 12.7 0.0 27 52 160 188 148 282 0.82 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_90 - 518 AAA_23 PF13476.1 202 0.00012 15.6 0.5 1 1 9.7e-06 0.00058 13.4 0.0 20 38 226 244 208 249 0.84 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 AAA_23 PF13476.1 202 0.00027 14.5 0.0 1 1 7.3e-06 0.00044 13.8 0.0 19 40 157 178 142 209 0.83 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_79 - 383 AAA_18 PF13238.1 129 1.8e-05 18.2 0.0 1 1 6e-07 3.6e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_90 - 518 AAA_18 PF13238.1 129 0.00036 14.0 0.0 1 1 2.1e-05 0.0013 12.2 0.0 1 18 228 245 228 316 0.86 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_22 - 215 CbiA PF01656.18 195 1.5e-09 30.7 0.1 1 1 1.8e-11 2.1e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 17261 # 17905 # 1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_90 - 518 AAA_14 PF13173.1 128 0.00092 12.3 0.1 1 1 3.7e-05 0.0044 10.1 0.0 5 30 228 254 225 286 0.80 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_90 - 518 AAA_29 PF13555.1 62 3.3e-05 16.6 0.0 1 1 1.1e-06 6.8e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 AAA_29 PF13555.1 62 4.6e-05 16.1 0.0 1 1 2.3e-06 0.00014 14.6 0.0 26 44 160 178 151 186 0.83 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_90 - 518 AAA PF00004.24 132 0.00024 14.5 0.2 1 4 0.1 12 -0.7 0.1 59 83 49 73 19 98 0.52 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_90 - 518 AAA PF00004.24 132 0.00024 14.5 0.2 2 4 0.073 8.7 -0.3 0.0 39 57 82 100 68 110 0.79 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_90 - 518 AAA PF00004.24 132 0.00024 14.5 0.2 3 4 0.00033 0.039 7.3 0.0 1 21 228 248 228 278 0.83 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_90 - 518 AAA PF00004.24 132 0.00024 14.5 0.2 4 4 0.017 2 1.8 0.0 9 66 442 508 436 515 0.64 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_54 - 764 TraG-D_C PF12696.2 128 6.3e-07 22.5 0.2 1 1 1.2e-08 1.4e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 41671 # 43962 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_30 - 228 Methyltransf_26 PF13659.1 117 1e-11 38.0 0.1 1 2 2.1e-07 2.5e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 228 Methyltransf_26 PF13659.1 117 1e-11 38.0 0.1 2 2 9.7e-08 1.1e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_90 - 518 AAA_30 PF13604.1 196 0.00038 13.2 0.0 1 1 5.8e-06 0.00069 12.4 0.0 4 44 211 251 209 276 0.84 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_82 - 195 DNA_pol3_delta PF06144.8 172 1.3e-06 21.2 0.0 1 1 1.6e-08 1.9e-06 20.7 0.0 35 99 92 152 74 179 0.80 # 70455 # 71039 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.400 1_90 - 518 ABC_tran PF00005.22 137 8.4e-05 16.1 0.0 1 1 5.3e-06 0.00032 14.2 0.0 12 37 226 251 217 288 0.81 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 ABC_tran PF00005.22 137 0.00013 15.4 0.0 1 1 4.3e-06 0.00026 14.5 0.0 16 35 162 181 152 211 0.87 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_30 - 228 Cons_hypoth95 PF03602.10 183 1.6e-05 17.5 0.0 1 2 0.00043 0.051 6.1 0.0 112 146 18 54 9 81 0.65 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 228 Cons_hypoth95 PF03602.10 183 1.6e-05 17.5 0.0 2 2 4e-05 0.0048 9.4 0.0 41 62 162 183 145 218 0.78 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_90 - 518 DAP3 PF10236.4 309 0.00075 11.6 0.0 1 1 1.2e-05 0.0014 10.7 0.0 21 42 223 244 215 253 0.86 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_90 - 518 AAA_19 PF13245.1 76 0.00011 15.1 0.0 1 1 2.6e-06 0.00031 13.7 0.0 10 46 226 259 218 268 0.79 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_66 - 1015 AAA_10 PF12846.2 304 1.3e-30 99.9 0.0 1 1 1e-31 3.1e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 53737 # 56781 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_54 - 764 AAA_10 PF12846.2 304 2.4e-05 17.0 0.9 1 1 2.3e-06 6.8e-05 15.5 0.9 2 287 137 501 136 515 0.63 # 41671 # 43962 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_90 - 518 AAA_10 PF12846.2 304 0.00026 13.6 0.0 1 1 1.7e-05 0.0005 12.7 0.0 4 30 228 256 226 320 0.81 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 AAA_10 PF12846.2 304 0.00061 12.4 0.0 1 1 4e-05 0.0012 11.4 0.0 2 21 158 177 157 196 0.83 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_50 - 283 Methyltransf_27 PF13708.1 194 4.5e-68 221.7 0.0 1 1 5.1e-70 6.1e-68 221.3 0.0 2 194 85 278 84 278 0.96 # 37090 # 37938 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_54 - 764 TrwB_AAD_bind PF10412.4 386 2.7e-06 19.3 0.2 1 2 9.3e-05 0.011 7.4 0.0 11 32 132 153 126 157 0.84 # 41671 # 43962 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_54 - 764 TrwB_AAD_bind PF10412.4 386 2.7e-06 19.3 0.2 2 2 3e-05 0.0036 9.0 0.1 247 332 440 525 427 555 0.88 # 41671 # 43962 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_30 - 228 MethyltransfD12 PF02086.10 260 0.0005 12.7 0.0 1 2 0.015 1.7 1.1 0.0 175 188 18 31 8 92 0.81 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 228 MethyltransfD12 PF02086.10 260 0.0005 12.7 0.0 2 2 4e-05 0.0048 9.5 0.0 20 46 163 189 148 197 0.78 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_79 - 383 RNA_helicase PF00910.17 107 0.00011 15.5 0.0 1 1 1.9e-06 0.00023 14.5 0.0 2 28 161 187 160 205 0.83 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_90 - 518 AAA_25 PF13481.1 194 0.00021 13.9 0.1 1 2 8.7e-05 0.0052 9.3 0.0 25 65 217 260 200 270 0.72 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_90 - 518 AAA_25 PF13481.1 194 0.00021 13.9 0.1 2 2 0.039 2.3 0.7 0.0 153 190 297 337 292 340 0.74 # 77847 # 79400 # -1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_79 - 383 AAA_25 PF13481.1 194 0.00023 13.7 0.0 1 1 7.1e-06 0.00042 12.9 0.0 24 58 148 182 124 207 0.78 # 67642 # 68790 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_30 - 228 Methyltransf_15 PF09445.5 164 0.00094 11.9 0.0 1 2 0.045 5.3 -0.3 0.0 53 79 4 29 2 32 0.90 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_30 - 228 Methyltransf_15 PF09445.5 164 0.00094 11.9 0.0 2 2 4.2e-05 0.0051 9.5 0.0 3 31 166 194 164 209 0.86 # 23766 # 24449 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/562b42a2-9798-49c8-ad49-2fd24c25e8ca # Target file: checkm_output/bins/pn63/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn63/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/562b42a2-9798-49c8-ad49-2fd24c25e8ca checkm_output/bins/pn63/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:31 2020 # [ok]