# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 278 Eno-Rase_NADH_b PF12242.3 78 1.2e-05 18.0 0.3 1 1 1.2e-06 5.7e-05 15.8 0.2 38 77 3 41 1 42 0.80 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_41 - 248 Eno-Rase_NADH_b PF12242.3 78 0.00026 13.6 0.2 1 1 5.5e-06 0.00026 13.6 0.2 38 68 5 33 1 41 0.74 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_4 - 318 Saccharop_dh PF03435.13 386 5e-05 15.2 0.1 1 1 7.6e-07 7.4e-05 14.7 0.1 1 91 13 118 13 120 0.81 # 1961 # 2914 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 254 DUF1776 PF08643.5 299 1.8e-05 16.8 0.1 1 1 6.8e-07 3.3e-05 16.0 0.1 115 196 101 179 92 180 0.82 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 3_2 - 278 DUF1776 PF08643.5 299 0.00035 12.6 0.0 1 1 1.2e-05 0.00057 11.9 0.0 101 203 85 185 80 210 0.85 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_23 - 402 MipZ PF09140.6 261 1.8e-06 20.0 0.0 1 2 0.0027 0.26 3.1 0.0 3 50 111 163 109 193 0.73 # 17220 # 18425 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_23 - 402 MipZ PF09140.6 261 1.8e-06 20.0 0.0 2 2 8.7e-07 8.4e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 17220 # 18425 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_10 - 673 UvrD_C_2 PF13538.1 104 2.1e-08 27.2 0.4 1 2 0.1 9.7 -0.7 0.0 4 43 143 182 141 207 0.75 # 6328 # 8346 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 2_10 - 673 UvrD_C_2 PF13538.1 104 2.1e-08 27.2 0.4 2 2 1.4e-09 1.3e-07 24.6 0.1 3 102 259 362 252 364 0.76 # 6328 # 8346 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 1_4 - 318 NmrA PF05368.8 233 1.4e-22 72.9 0.0 1 1 3.4e-24 1.7e-22 72.7 0.0 1 228 13 248 13 301 0.89 # 1961 # 2914 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 254 NmrA PF05368.8 233 0.00053 12.1 0.1 1 1 1.8e-05 0.00086 11.4 0.1 1 67 8 74 8 90 0.91 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 2_34 - 896 AAA_21 PF13304.1 303 1.3e-06 21.4 0.1 1 2 3.2e-05 0.0031 10.3 0.0 2 69 288 348 287 353 0.66 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 2_34 - 896 AAA_21 PF13304.1 303 1.3e-06 21.4 0.1 2 2 7.7e-05 0.0075 9.0 0.0 223 300 764 839 673 842 0.77 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_33 - 344 ADH_zinc_N_2 PF13602.1 127 4.1e-05 17.4 0.0 1 1 7.3e-07 7e-05 16.6 0.0 20 125 220 335 195 337 0.69 # 28281 # 29312 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_34 - 896 MobB PF03205.9 140 0.00029 13.4 0.0 1 1 6.7e-06 0.00065 12.3 0.0 4 29 289 315 286 342 0.65 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_33 - 344 ADH_zinc_N PF00107.21 130 1.1e-10 34.1 0.0 1 1 4.4e-12 2.1e-10 33.1 0.0 2 123 177 291 176 298 0.90 # 28281 # 29312 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 1_41 - 248 ADH_zinc_N PF00107.21 130 0.00015 14.2 0.1 1 1 6.1e-06 0.00029 13.2 0.1 1 68 16 89 16 98 0.81 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_52 - 299 Semialdhyde_dh PF01118.19 121 0.00034 13.8 0.0 1 1 2.1e-05 0.002 11.3 0.0 2 87 9 89 8 99 0.76 # 47545 # 48441 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_52 - 299 F420_oxidored PF03807.12 96 0.0002 14.6 0.0 1 1 3.6e-06 0.00035 13.9 0.0 2 91 9 98 8 103 0.82 # 47545 # 48441 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_33 - 344 FAD_binding_3 PF01494.14 356 0.0005 12.0 0.0 1 1 6e-06 0.00058 11.8 0.0 2 40 167 206 166 315 0.89 # 28281 # 29312 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 2_34 - 896 SMC_N PF02463.14 220 4.7e-11 35.2 0.0 1 1 8.9e-12 8.6e-10 31.0 0.0 17 216 278 854 269 857 0.89 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 2_34 - 896 AAA_16 PF13191.1 185 0.0029 10.4 0.0 1 1 3e-05 0.0029 10.4 0.0 29 51 290 312 284 323 0.82 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 2_34 - 896 AAA_23 PF13476.1 202 4.5e-08 26.5 0.0 1 1 1.1e-09 1.1e-07 25.2 0.0 13 88 279 407 271 605 0.55 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_41 - 248 adh_short PF00106.20 167 9.4e-33 106.3 0.5 1 1 5.2e-34 1.3e-32 105.9 0.5 1 167 6 168 6 168 0.94 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 3_2 - 278 adh_short PF00106.20 167 1.7e-31 102.2 0.1 1 1 1.2e-32 2.9e-31 101.5 0.1 1 166 5 168 5 169 0.89 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_57 - 272 adh_short PF00106.20 167 2.8e-30 98.3 4.2 1 1 1.6e-31 4e-30 97.8 4.2 1 166 10 176 10 177 0.97 # 52337 # 53152 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_56 - 254 adh_short PF00106.20 167 8.6e-27 86.9 0.6 1 1 4.8e-28 1.2e-26 86.5 0.6 2 163 7 166 6 170 0.93 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 2_23 - 402 CbiA PF01656.18 195 1.5e-18 59.8 0.0 1 1 2.8e-20 2.7e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 17220 # 18425 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 2_34 - 896 AAA_29 PF13555.1 62 3.2e-05 16.3 0.0 1 1 7.1e-07 6.9e-05 15.2 0.0 18 47 282 309 276 322 0.78 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_56 - 254 KR PF08659.5 181 8.2e-15 47.8 0.3 1 1 4.9e-16 1.2e-14 47.2 0.3 2 159 7 161 6 170 0.90 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_41 - 248 KR PF08659.5 181 1.1e-14 47.4 0.2 1 1 6.3e-16 1.5e-14 46.9 0.2 2 167 7 167 6 181 0.90 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_57 - 272 KR PF08659.5 181 6e-14 44.9 2.9 1 1 3.3e-15 8.1e-14 44.5 2.9 1 164 10 173 10 187 0.87 # 52337 # 53152 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 3_2 - 278 KR PF08659.5 181 8e-11 34.8 0.0 1 1 5e-12 1.2e-10 34.2 0.0 2 169 6 170 5 185 0.85 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 2_23 - 402 AAA_31 PF13614.1 157 9.2e-05 15.3 0.0 1 1 5.5e-06 0.00053 12.8 0.0 108 147 235 273 230 279 0.86 # 17220 # 18425 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.458 1_52 - 299 NAD_Gly3P_dh_N PF01210.18 157 1.4e-07 24.2 0.1 1 1 4.3e-09 4.1e-07 22.7 0.1 2 111 9 108 8 125 0.87 # 47545 # 48441 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 2_10 - 673 AAA_30 PF13604.1 196 3.7e-11 35.8 0.1 1 1 2.6e-12 2.5e-10 33.1 0.1 116 186 7 77 1 81 0.88 # 6328 # 8346 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.618 1_52 - 299 ApbA PF02558.11 151 2.6e-28 91.2 0.0 1 1 7.2e-30 3.5e-28 90.8 0.0 1 150 9 151 9 152 0.93 # 47545 # 48441 # 1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_57 - 272 ApbA PF02558.11 151 0.00036 12.8 0.2 1 1 2.5e-05 0.0012 11.2 0.2 8 47 20 57 13 119 0.82 # 52337 # 53152 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 2_34 - 896 ABC_tran PF00005.22 137 5.8e-05 16.3 0.2 1 1 3.3e-06 0.00032 13.9 0.0 15 42 289 316 280 355 0.87 # 27174 # 29861 # -1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.536 1_41 - 248 THF_DHG_CYH_C PF02882.14 161 0.00013 13.9 0.2 1 2 5.8e-06 0.00057 11.9 0.1 33 76 2 45 1 74 0.80 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_41 - 248 THF_DHG_CYH_C PF02882.14 161 0.00013 13.9 0.2 2 2 0.065 6.3 -1.3 0.0 39 62 130 155 108 171 0.62 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_56 - 254 RmlD_sub_bind PF04321.12 287 3.8e-05 15.5 0.1 1 1 1.7e-06 8.2e-05 14.4 0.1 2 76 7 103 6 123 0.85 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 3_2 - 278 RmlD_sub_bind PF04321.12 287 0.00011 14.0 0.1 1 1 3.7e-06 0.00018 13.3 0.1 2 70 6 97 5 121 0.79 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 3_2 - 278 NAD_binding_10 PF13460.1 183 1.2e-09 31.2 0.2 1 2 1.6e-09 3.1e-08 26.7 0.1 1 100 7 139 7 146 0.74 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 3_2 - 278 NAD_binding_10 PF13460.1 183 1.2e-09 31.2 0.2 2 2 0.044 0.85 2.4 0.0 56 107 197 257 156 274 0.61 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_56 - 254 NAD_binding_10 PF13460.1 183 5.7e-08 25.8 0.1 1 1 4.8e-09 9.3e-08 25.1 0.1 1 145 8 183 8 195 0.77 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_4 - 318 NAD_binding_10 PF13460.1 183 3e-05 16.9 0.2 1 1 7.9e-06 0.00015 14.6 0.2 1 147 13 170 13 177 0.72 # 1961 # 2914 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_57 - 272 NAD_binding_10 PF13460.1 183 0.00011 15.0 0.3 1 1 1.7e-05 0.00032 13.6 0.3 2 68 13 90 13 126 0.73 # 52337 # 53152 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_41 - 248 NAD_binding_10 PF13460.1 183 0.00013 14.9 1.7 1 1 2.7e-05 0.00052 12.9 1.7 2 46 9 58 9 228 0.75 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 1_41 - 248 adh_short_C2 PF13561.1 241 1.3e-37 122.7 0.1 1 1 6.3e-39 1.5e-37 122.4 0.1 6 240 15 244 12 245 0.91 # 36641 # 37384 # -1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.511 3_2 - 278 adh_short_C2 PF13561.1 241 1.8e-19 63.3 0.0 1 1 9.3e-21 2.3e-19 62.9 0.0 3 186 13 188 11 220 0.87 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_56 - 254 adh_short_C2 PF13561.1 241 4.1e-11 35.9 0.1 1 1 2.1e-12 5.1e-11 35.6 0.1 6 183 15 186 12 235 0.84 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_57 - 272 adh_short_C2 PF13561.1 241 4.9e-11 35.7 0.1 1 1 2.9e-12 7e-11 35.2 0.1 5 183 18 193 16 201 0.91 # 52337 # 53152 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_4 - 318 ThiF PF00899.16 136 9.3e-05 15.1 0.0 1 2 5.5e-05 0.0053 9.4 0.0 3 23 11 31 9 37 0.92 # 1961 # 2914 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_4 - 318 ThiF PF00899.16 136 9.3e-05 15.1 0.0 2 2 0.0042 0.4 3.4 0.0 82 119 80 120 42 128 0.76 # 1961 # 2914 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 254 Epimerase PF01370.16 236 9.4e-08 24.6 0.2 1 1 6.6e-09 2.1e-07 23.4 0.2 1 104 8 122 8 167 0.75 # 51546 # 52307 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 3_2 - 278 Epimerase PF01370.16 236 1.2e-07 24.2 0.1 1 1 6.6e-09 2.1e-07 23.4 0.1 1 104 7 121 7 141 0.81 # 1838 # 2671 # 1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_57 - 272 Epimerase PF01370.16 236 8.6e-07 21.4 0.3 1 1 4e-08 1.3e-06 20.8 0.3 2 104 13 123 12 156 0.71 # 52337 # 53152 # -1 # ID=1_57;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_4 - 318 Pyr_redox PF00070.22 80 0.00011 15.4 0.2 1 1 2.3e-06 0.00022 14.5 0.2 1 63 12 77 12 86 0.85 # 1961 # 2914 # 1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.509 1_33 - 344 TrkA_N PF02254.13 116 3.6e-05 16.6 1.1 1 1 6.1e-07 5.9e-05 15.9 0.2 1 45 169 214 169 224 0.92 # 28281 # 29312 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.504 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/11bdd84d-8ab8-40aa-86b8-cfe8b203c8c3 # Target file: checkm_output/bins/pn54/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn54/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/11bdd84d-8ab8-40aa-86b8-cfe8b203c8c3 checkm_output/bins/pn54/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:25 2020 # [ok]