# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 4_2 - 234 UPF0020 PF01170.13 180 1.9e-06 20.6 0.0 1 2 0.0001 0.0054 9.3 0.0 103 120 17 34 5 80 0.83 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 4_2 - 234 UPF0020 PF01170.13 180 1.9e-06 20.6 0.0 2 2 9.8e-05 0.0052 9.3 0.0 28 56 170 199 165 228 0.63 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 4_14 - 183 UPF0020 PF01170.13 180 1.3e-05 17.9 0.0 1 1 1.4e-06 7.4e-05 15.4 0.0 19 54 41 78 39 138 0.74 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 4_14 - 183 RrnaAD PF00398.15 262 2.6e-07 22.9 0.0 1 1 3.1e-09 3.4e-07 22.5 0.0 9 113 29 128 26 140 0.90 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_7 - 402 MipZ PF09140.6 261 2e-06 20.0 0.0 1 2 0.0027 0.29 3.1 0.0 3 50 111 163 109 193 0.73 # 4727 # 5932 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_7 - 402 MipZ PF09140.6 261 2e-06 20.0 0.0 2 2 8.7e-07 9.3e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 4727 # 5932 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 4_14 - 183 Methyltransf_18 PF12847.2 112 9.8e-08 25.6 0.0 1 1 1.5e-09 1.7e-07 24.9 0.0 2 107 51 144 50 145 0.92 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 5_5 - 276 Usp PF00582.21 140 1.3e-35 115.7 0.2 1 2 6.6e-21 7e-19 61.4 0.2 1 140 1 152 1 152 0.91 # 4618 # 5445 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.633 5_5 - 276 Usp PF00582.21 140 1.3e-35 115.7 0.2 2 2 9.8e-17 1e-14 47.9 0.0 49 140 197 275 158 275 0.73 # 4618 # 5445 # -1 # ID=5_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.633 1_19 - 729 NB-ARC PF00931.17 287 0.00074 11.4 0.0 1 1 1.5e-05 0.0016 10.3 0.0 12 109 40 197 29 220 0.68 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 729 AAA_22 PF13401.1 131 1e-08 28.4 0.0 1 1 2e-09 2.1e-07 24.2 0.0 9 121 50 226 44 235 0.77 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 729 PRK PF00485.13 194 0.0012 11.4 0.0 1 1 2.8e-05 0.003 10.1 0.0 1 36 47 82 47 134 0.81 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 729 KAP_NTPase PF07693.9 325 3.1e-55 180.4 0.0 1 1 4e-57 4.3e-55 179.9 0.0 1 324 26 326 26 327 0.89 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 4_2 - 234 N6_N4_Mtase PF01555.13 231 1.3e-32 106.1 0.0 1 2 6.8e-13 7.3e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 4_2 - 234 N6_N4_Mtase PF01555.13 231 1.3e-32 106.1 0.0 2 2 2e-23 2.1e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 1_19 - 729 AAA_17 PF13207.1 121 0.00012 15.9 0.0 1 1 7.9e-06 0.00084 13.2 0.0 1 27 47 73 47 230 0.86 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 729 AAA_16 PF13191.1 185 8.2e-09 28.7 0.0 1 1 2.2e-10 2.4e-08 27.2 0.0 11 172 32 215 24 225 0.66 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 729 AAA_18 PF13238.1 129 0.00084 12.7 0.0 1 1 2e-05 0.0022 11.4 0.0 1 23 48 78 48 117 0.78 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_7 - 402 CbiA PF01656.18 195 1.4e-18 60.0 0.0 1 1 2.8e-20 3e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 4727 # 5932 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_19 - 729 MMR_HSR1 PF01926.18 116 0.00087 12.3 0.0 1 1 1.8e-05 0.0019 11.2 0.0 2 37 48 80 47 102 0.83 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 4_14 - 183 N6_Mtase PF02384.11 311 0.00016 13.8 0.0 1 2 2.5e-05 0.0027 9.8 0.0 28 71 32 75 21 93 0.82 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 4_14 - 183 N6_Mtase PF02384.11 311 0.00016 13.8 0.0 2 2 0.0054 0.58 2.1 0.0 124 138 111 125 95 133 0.81 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 10_2 - 92 MEDS PF14417.1 191 0.00061 11.9 0.0 1 1 7.2e-06 0.00077 11.5 0.0 40 75 25 60 13 69 0.86 # 626 # 901 # -1 # ID=10_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_19 - 729 DUF258 PF03193.11 161 0.00063 11.9 0.0 1 1 1.1e-05 0.0012 11.1 0.0 25 65 36 75 18 80 0.72 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_7 - 402 AAA_31 PF13614.1 157 0.0001 15.3 0.0 1 1 5.5e-06 0.00058 12.8 0.0 108 147 235 273 230 279 0.86 # 4727 # 5932 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 4_14 - 183 Methyltransf_26 PF13659.1 117 1.8e-13 43.6 0.1 1 1 5.5e-15 2.9e-13 42.9 0.1 2 111 52 144 51 148 0.90 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 4_2 - 234 Methyltransf_26 PF13659.1 117 3.7e-11 36.1 0.2 1 2 6.4e-07 3.4e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 4_2 - 234 Methyltransf_26 PF13659.1 117 3.7e-11 36.1 0.2 2 2 5.3e-07 2.8e-05 17.2 0.1 4 42 174 211 171 227 0.81 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 4_14 - 183 MTS PF05175.9 170 1.1e-09 30.9 0.0 1 1 1.4e-11 1.5e-09 30.4 0.0 24 141 43 149 38 168 0.84 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_19 - 729 ABC_tran PF00005.22 137 0.00041 13.7 0.0 1 1 9.6e-06 0.001 12.4 0.0 11 37 45 71 39 96 0.90 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 4_2 - 234 Cons_hypoth95 PF03602.10 183 4.2e-06 19.2 0.0 1 2 0.00016 0.017 7.4 0.0 113 169 19 77 12 86 0.70 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 4_2 - 234 Cons_hypoth95 PF03602.10 183 4.2e-06 19.2 0.0 2 2 3.1e-05 0.0033 9.8 0.0 20 60 149 188 142 225 0.73 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 1_19 - 729 DUF2791 PF10923.3 417 0.00022 12.9 0.1 1 2 6.8e-06 0.00073 11.1 0.0 31 85 27 81 22 138 0.69 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 729 DUF2791 PF10923.3 417 0.00022 12.9 0.1 2 2 0.074 7.9 -2.1 0.0 189 242 641 696 631 704 0.77 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 4_14 - 183 Methyltransf_2 PF00891.13 242 0.0012 11.0 0.0 1 1 1.7e-05 0.0018 10.5 0.0 111 159 60 110 40 119 0.83 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 4_14 - 183 TIGR00755 TIGR00755 256 6.5e-08 24.8 0.0 1 1 8.4e-10 9e-08 24.3 0.0 8 105 29 123 26 128 0.90 # 8445 # 8993 # 1 # ID=4_14;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.596 10_1 - 193 EFP PF01132.15 55 0.0012 11.5 0.0 1 1 1.9e-05 0.002 10.9 0.0 5 36 124 155 121 157 0.88 # 2 # 580 # -1 # ID=10_1;partial=10;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.547 1_19 - 729 NACHT PF05729.7 166 2.1e-06 20.5 0.0 1 1 7.2e-08 7.7e-06 18.6 0.0 3 99 48 166 46 216 0.78 # 14855 # 17041 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.535 4_2 - 234 Methyltransf_15 PF09445.5 164 0.00087 11.9 0.0 1 2 0.023 2.5 0.6 0.0 53 80 4 30 2 38 0.91 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 4_2 - 234 Methyltransf_15 PF09445.5 164 0.00087 11.9 0.0 2 2 7.6e-05 0.0081 8.7 0.0 3 30 173 200 171 209 0.90 # 903 # 1604 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.601 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/01876803-3081-420f-a285-e5f452f44d06 # Target file: checkm_output/bins/pn23/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn23/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/01876803-3081-420f-a285-e5f452f44d06 checkm_output/bins/pn23/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:05 2020 # [ok]