# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_19 - 225 Eno-Rase_NADH_b PF12242.3 78 4e-06 19.6 0.1 1 2 9.5e-07 0.0001 15.1 0.0 40 77 4 40 2 41 0.88 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_19 - 225 Eno-Rase_NADH_b PF12242.3 78 4e-06 19.6 0.1 2 2 0.013 1.4 1.9 0.0 3 31 43 70 42 85 0.81 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_96 - 399 MipZ PF09140.6 261 9.5e-07 21.1 0.3 1 2 4.5e-05 0.0049 8.9 0.0 2 53 110 166 109 190 0.73 # 110382 # 111578 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_96 - 399 MipZ PF09140.6 261 9.5e-07 21.1 0.3 2 2 2e-05 0.0022 10.1 0.1 90 135 236 281 222 287 0.89 # 110382 # 111578 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_31 - 237 Methyltransf_18 PF12847.2 112 8.3e-05 16.2 0.0 1 1 1.7e-06 0.00018 15.1 0.0 2 110 72 172 71 174 0.84 # 38623 # 39333 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_19 - 225 NmrA PF05368.8 233 0.00041 12.6 0.1 1 1 8.1e-06 0.00088 11.5 0.1 1 35 6 40 6 49 0.94 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_10 - 257 AAA_22 PF13401.1 131 3.1e-05 17.1 0.0 1 1 1.2e-06 0.00013 15.1 0.0 5 30 65 90 61 162 0.75 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 257 KAP_NTPase PF07693.9 325 0.001 11.1 0.0 1 1 1.5e-05 0.0017 10.4 0.0 18 72 62 115 50 134 0.78 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_27 - 253 AAA_15 PF13175.1 415 0.00057 11.9 0.2 1 2 0.0007 0.075 5.0 0.0 27 42 33 48 13 85 0.83 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_27 - 253 AAA_15 PF13175.1 415 0.00057 11.9 0.2 2 2 0.00066 0.072 5.0 0.2 373 397 160 184 151 191 0.92 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_10 - 257 AAA_17 PF13207.1 121 0.00055 13.8 0.0 1 1 1.7e-05 0.0018 12.1 0.0 3 40 68 109 67 150 0.64 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_27 - 253 AAA_21 PF13304.1 303 6.9e-16 52.0 0.2 1 2 5.6e-10 6e-08 25.9 0.1 4 29 33 60 31 83 0.75 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_27 - 253 AAA_21 PF13304.1 303 6.9e-16 52.0 0.2 2 2 1.7e-09 1.8e-07 24.4 0.0 221 285 123 184 94 216 0.79 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_27 - 253 SMC_N PF02463.14 220 3.8e-06 19.3 0.1 1 1 2.8e-07 3e-05 16.3 0.1 28 186 32 184 15 206 0.70 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_96 - 399 Fer4_NifH PF00142.13 273 0.001 11.3 0.0 1 1 1.7e-05 0.0018 10.4 0.0 8 74 117 188 110 197 0.77 # 110382 # 111578 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_10 - 257 Arch_ATPase PF01637.13 234 0.00075 12.2 0.0 1 1 1.1e-05 0.0012 11.5 0.0 4 68 48 121 46 209 0.67 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 257 AAA_16 PF13191.1 185 8.9e-07 22.1 0.6 1 2 2.7e-07 1.4e-05 18.1 0.0 7 51 50 91 45 111 0.76 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 257 AAA_16 PF13191.1 185 8.9e-07 22.1 0.6 2 2 0.024 1.3 2.0 0.0 129 161 110 142 97 162 0.63 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_27 - 253 AAA_16 PF13191.1 185 6.3e-05 16.0 1.3 1 1 3.2e-06 0.00017 14.6 1.3 24 63 28 67 15 205 0.81 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_27 - 253 AAA_23 PF13476.1 202 0.0012 12.2 0.1 1 1 1.9e-05 0.002 11.5 0.1 25 37 34 46 29 51 0.88 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_19 - 225 adh_short PF00106.20 167 3.5e-21 68.8 1.3 1 1 5.5e-23 5.9e-21 68.1 1.3 2 163 5 160 4 164 0.87 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_96 - 399 CbiA PF01656.18 195 4e-21 68.3 0.0 1 1 7.8e-23 8.4e-21 67.2 0.0 1 143 111 293 111 324 0.74 # 110382 # 111578 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_27 - 253 AAA_29 PF13555.1 62 4.6e-05 16.0 0.1 1 1 8.4e-07 9.1e-05 15.0 0.1 22 40 27 45 16 54 0.82 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_10 - 257 AAA PF00004.24 132 9.6e-08 25.3 0.0 1 1 1.7e-09 1.8e-07 24.4 0.0 2 89 68 158 67 198 0.78 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_19 - 225 KR PF08659.5 181 1.5e-07 24.3 1.7 1 1 4.3e-09 4.6e-07 22.7 1.7 3 162 6 158 5 166 0.81 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_99 - 441 Pyr_redox_3 PF13738.1 203 5.8e-20 65.2 0.0 1 2 1e-18 1.1e-16 54.5 0.0 73 201 87 218 55 220 0.82 # 115302 # 116624 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_99 - 441 Pyr_redox_3 PF13738.1 203 5.8e-20 65.2 0.0 2 2 0.00011 0.011 8.7 0.0 99 144 289 337 228 368 0.71 # 115302 # 116624 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_27 - 253 DUF258 PF03193.11 161 0.00025 13.3 0.0 1 1 3.6e-06 0.00039 12.6 0.0 19 59 11 52 2 87 0.78 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_96 - 399 AAA_31 PF13614.1 157 3.8e-06 19.9 0.0 1 2 0.0033 0.18 4.8 0.0 8 53 116 166 109 209 0.79 # 110382 # 111578 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_96 - 399 AAA_31 PF13614.1 157 3.8e-06 19.9 0.0 2 2 1.1e-05 0.00062 12.7 0.0 109 148 236 274 234 279 0.88 # 110382 # 111578 # 1 # ID=1_96;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.543 1_10 - 257 AAA_31 PF13614.1 157 2.3e-05 17.4 0.1 1 2 2.6e-05 0.0014 11.6 0.0 5 34 68 97 66 120 0.79 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 257 AAA_31 PF13614.1 157 2.3e-05 17.4 0.1 2 2 0.007 0.38 3.7 0.0 19 37 119 137 101 149 0.78 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_27 - 253 AAA_33 PF13671.1 143 0.00012 15.0 0.0 1 1 5.8e-06 0.00063 12.7 0.0 4 98 33 187 31 199 0.75 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_27 - 253 ABC_tran PF00005.22 137 6.9e-35 113.3 0.0 1 1 8.4e-37 9.1e-35 113.0 0.0 1 137 18 167 18 167 0.96 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_99 - 441 K_oxygenase PF13434.1 341 6e-118 386.6 0.0 1 1 6.6e-120 7.1e-118 386.3 0.0 1 340 2 332 2 333 0.95 # 115302 # 116624 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_19 - 225 NAD_binding_4 PF07993.7 249 0.00025 13.0 0.1 1 1 1.8e-05 0.002 10.1 0.1 8 84 15 88 8 165 0.83 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_31 - 237 Methyltransf_2 PF00891.13 242 2.6e-43 140.9 0.0 1 1 2.8e-45 3e-43 140.7 0.0 31 241 1 211 1 212 0.95 # 38623 # 39333 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.487 1_19 - 225 RmlD_sub_bind PF04321.12 287 2e-06 19.8 0.1 1 1 2.5e-08 2.7e-06 19.4 0.1 2 89 5 114 4 138 0.83 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_19 - 225 NAD_binding_10 PF13460.1 183 1.7e-10 34.2 0.3 1 1 2.3e-12 2.4e-10 33.7 0.3 1 150 6 183 6 208 0.59 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_19 - 225 adh_short_C2 PF13561.1 241 7e-11 35.3 0.0 1 1 7.8e-13 8.4e-11 35.0 0.0 5 183 12 181 9 195 0.82 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_27 - 253 SbcCD_C PF13558.1 90 0.00026 13.9 0.0 1 1 3.7e-05 0.004 10.1 0.0 28 89 134 182 117 183 0.73 # 35972 # 36730 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_99 - 441 FMO-like PF00743.14 532 1.4e-06 19.7 0.0 1 2 7.7e-07 8.4e-05 13.9 0.0 85 202 97 199 80 217 0.76 # 115302 # 116624 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_99 - 441 FMO-like PF00743.14 532 1.4e-06 19.7 0.0 2 2 0.00087 0.094 3.8 0.0 316 337 317 338 299 348 0.81 # 115302 # 116624 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_99 - 441 NAD_binding_9 PF13454.1 156 6.9e-06 18.9 6.2 1 2 2.1e-05 0.0023 10.7 0.1 61 154 63 149 39 151 0.66 # 115302 # 116624 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_99 - 441 NAD_binding_9 PF13454.1 156 6.9e-06 18.9 6.2 2 2 0.0003 0.033 7.0 1.4 121 155 292 331 184 332 0.72 # 115302 # 116624 # -1 # ID=1_99;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.594 1_19 - 225 Epimerase PF01370.16 236 5e-10 32.2 0.0 1 1 7.5e-12 8.1e-10 31.5 0.0 1 154 6 159 6 175 0.75 # 25355 # 26029 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.597 1_98 - 717 Plug PF07715.10 108 1.7e-22 72.8 2.2 1 1 4.5e-24 4.8e-22 71.4 2.2 3 108 28 130 26 130 0.95 # 113084 # 115234 # -1 # ID=1_98;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.553 1_10 - 257 NACHT PF05729.7 166 5.6e-07 22.4 0.0 1 2 5.6e-05 0.0061 9.2 0.0 3 28 67 92 65 99 0.85 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 1_10 - 257 NACHT PF05729.7 166 5.6e-07 22.4 0.0 2 2 1.6e-05 0.0017 11.0 0.0 65 162 113 210 96 214 0.79 # 15171 # 15941 # 1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.497 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/deb685aa-3cec-4685-a307-5cd70ed25c27 # Target file: checkm_output/bins/pn200/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn200/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/deb685aa-3cec-4685-a307-5cd70ed25c27 checkm_output/bins/pn200/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:02 2020 # [ok]