# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_77 - 698 Sulfotransfer_3 PF13469.1 215 3.7e-18 60.5 1.6 1 1 2.3e-20 3.7e-18 60.5 1.6 2 213 463 645 462 647 0.70 # 64185 # 66278 # -1 # ID=1_77;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 3_5 - 243 Eno-Rase_NADH_b PF12242.3 78 0.0007 13.0 0.0 1 1 9.2e-06 0.0015 12.0 0.0 42 66 10 33 2 43 0.70 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 2_7 - 161 Seryl_tRNA_N PF02403.17 108 0.093 6.4 16.1 1 2 0.0011 0.18 5.5 6.6 40 93 53 107 45 109 0.80 # 4352 # 4834 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 2_7 - 161 Seryl_tRNA_N PF02403.17 108 0.093 6.4 16.1 2 2 0.0007 0.11 6.1 8.9 41 89 83 131 78 159 0.81 # 4352 # 4834 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 2_11 - 229 Rad17 PF03215.10 519 0.0006 12.1 0.1 1 1 5.2e-06 0.00083 11.6 0.1 43 65 27 49 19 57 0.78 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 3_5 - 243 DUF1776 PF08643.5 299 0.00013 14.7 0.0 1 1 1.1e-06 0.00018 14.2 0.0 97 225 84 207 48 226 0.85 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 1_7 - 210 IstB_IS21 PF01695.12 178 0.00058 12.9 0.0 1 1 1.3e-05 0.0011 12.0 0.0 51 85 4 40 2 50 0.82 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_11 - 229 IstB_IS21 PF01695.12 178 0.0019 11.2 0.5 1 2 0.0011 0.088 5.8 0.1 48 63 30 45 25 52 0.83 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 IstB_IS21 PF01695.12 178 0.0019 11.2 0.5 2 2 0.0046 0.37 3.7 0.0 105 154 156 203 117 218 0.69 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_7 - 210 MipZ PF09140.6 261 2e-21 69.8 0.7 1 2 7.6e-20 6.1e-18 58.3 0.1 2 140 3 119 2 129 0.86 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_7 - 210 MipZ PF09140.6 261 2e-21 69.8 0.7 2 2 0.043 3.5 0.2 0.0 237 257 187 207 177 209 0.80 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_33 - 389 MipZ PF09140.6 261 4.1e-06 19.6 0.3 1 2 7e-06 0.00057 12.6 0.0 2 47 108 153 107 157 0.87 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 2_33 - 389 MipZ PF09140.6 261 4.1e-06 19.6 0.3 2 2 0.0014 0.11 5.1 0.0 86 134 222 270 195 291 0.83 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 1_7 - 210 YhjQ PF06564.7 244 1.3e-06 21.5 0.4 1 2 8.2e-08 1.3e-05 18.2 0.5 1 38 1 38 1 49 0.93 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_7 - 210 YhjQ PF06564.7 244 1.3e-06 21.5 0.4 2 2 0.028 4.5 0.1 0.0 107 144 69 104 50 115 0.76 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_25 - 1809 UvrD_C_2 PF13538.1 104 3.1e-08 27.3 0.3 1 1 1.1e-09 1.8e-07 24.9 0.1 18 103 1371 1478 1338 1479 0.65 # 17129 # 22555 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.603 2_24 - 145 Usp PF00582.21 140 9.6e-29 93.9 0.1 1 1 7.3e-31 1.2e-28 93.7 0.1 1 140 1 144 1 144 0.90 # 23446 # 23880 # 1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.437 1_7 - 210 DUF87 PF01935.12 229 0.00063 13.2 0.2 1 1 1.9e-05 0.0015 11.9 0.2 33 61 12 39 5 41 0.93 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_49 - 867 DUF87 PF01935.12 229 0.0014 12.0 0.3 1 1 5.6e-05 0.0045 10.4 0.0 26 68 483 524 481 626 0.84 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 3_5 - 243 NmrA PF05368.8 233 1.7e-05 17.7 2.0 1 1 1.5e-07 2.5e-05 17.2 1.3 2 66 11 76 10 83 0.91 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 2_11 - 229 AAA_22 PF13401.1 131 2e-05 18.3 1.0 1 2 1e-05 0.00081 13.1 0.1 6 23 31 48 26 61 0.88 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 AAA_22 PF13401.1 131 2e-05 18.3 1.0 2 2 0.0074 0.6 3.9 0.1 20 92 131 198 116 208 0.69 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_49 - 867 AAA_22 PF13401.1 131 0.00069 13.4 0.0 1 1 0.00011 0.0088 9.8 0.0 7 27 483 503 479 609 0.92 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_17 - 402 YjeF_N PF03853.10 169 0.001 12.2 0.1 1 1 1.2e-05 0.002 11.3 0.1 12 66 303 359 298 398 0.64 # 19220 # 20425 # -1 # ID=2_17;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.531 1_7 - 210 SRP54 PF00448.17 196 2.4e-08 27.2 0.2 1 1 5.2e-10 8.4e-08 25.4 0.2 3 98 2 92 1 142 0.77 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_7 - 210 AAA_17 PF13207.1 121 4.7e-05 17.8 0.0 1 1 1.9e-06 0.0001 16.7 0.0 9 77 12 85 10 207 0.76 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_11 - 229 AAA_17 PF13207.1 121 0.00045 14.6 0.0 1 1 2e-05 0.0011 13.4 0.0 3 17 33 47 31 90 0.89 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_49 - 867 AAA_17 PF13207.1 121 0.00049 14.5 0.4 1 1 2.8e-05 0.0015 12.9 0.3 2 32 483 518 482 623 0.75 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 229 AAA_21 PF13304.1 303 1.7e-10 34.8 0.1 1 2 1.5e-05 0.0025 11.4 0.0 1 17 31 47 31 67 0.93 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 AAA_21 PF13304.1 303 1.7e-10 34.8 0.1 2 2 1.1e-08 1.8e-06 21.7 0.1 234 298 140 202 119 202 0.86 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_7 - 210 MobB PF03205.9 140 5.3e-05 16.5 0.2 1 1 2e-06 0.00016 15.0 0.1 3 41 3 41 1 46 0.77 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_26 - 854 MobB PF03205.9 140 0.0003 14.1 0.0 1 1 7.2e-06 0.00058 13.2 0.0 5 34 198 227 194 243 0.86 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 1_7 - 210 ArsA_ATPase PF02374.10 305 2.5e-08 26.9 1.4 1 2 5.7e-10 4.6e-08 26.0 0.1 3 48 4 49 1 70 0.84 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_7 - 210 ArsA_ATPase PF02374.10 305 2.5e-08 26.9 1.4 2 2 0.086 7 -0.9 0.0 118 135 67 86 38 87 0.75 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_33 - 389 ArsA_ATPase PF02374.10 305 1.8e-06 20.7 0.5 1 2 3.3e-06 0.00027 13.6 0.1 9 36 115 142 109 151 0.89 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 2_33 - 389 ArsA_ATPase PF02374.10 305 1.8e-06 20.7 0.5 2 2 0.0014 0.11 5.0 0.0 122 136 230 244 218 251 0.81 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 2_11 - 229 SMC_N PF02463.14 220 6.4e-06 19.1 0.0 1 2 0.00036 0.058 6.1 0.0 26 42 31 47 23 53 0.87 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 SMC_N PF02463.14 220 6.4e-06 19.1 0.0 2 2 1.1e-05 0.0018 11.1 0.0 137 204 143 208 101 222 0.80 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_7 - 210 VirC1 PF07015.6 231 3.9e-10 32.7 0.1 1 1 1.2e-11 1e-09 31.4 0.1 1 197 1 193 1 207 0.73 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_33 - 389 VirC1 PF07015.6 231 4.2e-05 16.3 0.1 1 2 0.00055 0.045 6.4 0.0 4 42 109 147 107 155 0.91 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 2_33 - 389 VirC1 PF07015.6 231 4.2e-05 16.3 0.1 2 2 0.00024 0.019 7.6 0.0 83 140 234 291 221 317 0.77 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 1_7 - 210 Fer4_NifH PF00142.13 273 1.6e-05 17.8 0.3 1 2 2.6e-07 4.2e-05 16.4 0.0 8 38 10 40 1 47 0.87 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_7 - 210 Fer4_NifH PF00142.13 273 1.6e-05 17.8 0.3 2 2 0.097 16 -1.9 0.0 230 230 164 164 120 207 0.53 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_26 - 854 AAA_16 PF13191.1 185 2.1e-07 24.6 0.0 1 2 1.2e-07 6.3e-06 19.8 0.0 16 54 185 223 169 247 0.77 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 1_26 - 854 AAA_16 PF13191.1 185 2.1e-07 24.6 0.0 2 2 0.037 2 1.9 0.0 52 122 384 449 375 483 0.70 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 2_11 - 229 AAA_16 PF13191.1 185 5e-06 20.2 3.0 1 1 4.7e-07 2.5e-05 17.9 3.0 23 148 28 195 20 213 0.63 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_49 - 867 AAA_16 PF13191.1 185 0.00013 15.6 0.0 1 1 1.3e-05 0.00072 13.1 0.0 26 55 482 512 467 534 0.82 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 229 AAA_23 PF13476.1 202 0.0013 12.6 0.0 1 1 1.2e-05 0.002 12.1 0.0 21 37 31 47 22 54 0.87 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 3_5 - 243 adh_short PF00106.20 167 5.5e-37 120.8 2.6 1 1 3.4e-39 5.5e-37 120.8 2.6 2 166 9 170 8 171 0.92 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 2_33 - 389 CbiA PF01656.18 195 1.6e-36 119.1 0.0 1 1 2.7e-38 2.2e-36 118.7 0.0 2 194 110 339 109 340 0.79 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 1_7 - 210 CbiA PF01656.18 195 4e-24 78.6 0.1 1 2 2.8e-25 2.3e-23 76.2 0.1 1 147 4 133 4 177 0.79 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_7 - 210 CbiA PF01656.18 195 4e-24 78.6 0.1 2 2 0.014 1.1 2.1 0.0 119 145 137 163 132 203 0.87 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_11 - 229 AAA_14 PF13173.1 128 0.0011 12.5 0.0 1 1 1.1e-05 0.0018 11.8 0.0 3 21 30 48 28 55 0.87 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 AAA_29 PF13555.1 62 3.2e-07 23.4 0.1 1 1 8e-09 6.4e-07 22.5 0.1 20 51 27 57 16 63 0.83 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_26 - 854 AAA_29 PF13555.1 62 0.00064 12.9 0.0 1 1 2e-05 0.0016 11.6 0.0 15 40 186 210 182 211 0.84 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 3_5 - 243 KR PF08659.5 181 1.1e-16 54.5 1.4 1 1 1.1e-18 1.7e-16 53.9 1.0 3 169 10 172 9 187 0.86 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 1_67 - 244 DUF938 PF06080.7 204 0.00087 12.4 0.0 1 1 8e-06 0.0013 11.9 0.0 29 91 44 108 35 126 0.82 # 54110 # 54841 # -1 # ID=1_67;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.628 2_32 - 316 MEDS PF14417.1 191 0.00062 12.4 0.0 1 1 7e-06 0.0011 11.6 0.0 111 174 92 165 68 173 0.81 # 38575 # 39522 # 1 # ID=2_32;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.417 2_11 - 229 DUF258 PF03193.11 161 0.00019 14.2 0.0 1 1 2.2e-06 0.00035 13.4 0.0 36 54 30 48 21 56 0.86 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_26 - 854 TraG-D_C PF12696.2 128 3e-22 72.4 0.0 1 1 3.6e-24 5.8e-22 71.5 0.0 1 128 426 549 426 549 0.84 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 2_33 - 389 AAA_31 PF13614.1 157 2.6e-09 30.8 0.0 1 2 2.6e-08 2.1e-06 21.3 0.0 2 49 108 155 107 196 0.90 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 2_33 - 389 AAA_31 PF13614.1 157 2.6e-09 30.8 0.0 2 2 0.00062 0.05 7.1 0.1 110 151 227 267 219 272 0.83 # 40062 # 41228 # 1 # ID=2_33;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.459 1_7 - 210 AAA_31 PF13614.1 157 1.4e-06 21.9 0.0 1 1 9.6e-08 7.7e-06 19.5 0.0 2 42 3 43 2 58 0.87 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_11 - 229 AAA_33 PF13671.1 143 0.00072 13.0 0.1 1 1 8.4e-06 0.0014 12.1 0.0 3 19 33 49 31 148 0.74 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_25 - 1809 AAA_30 PF13604.1 196 4.3e-45 147.2 11.0 1 2 6.3e-05 0.01 9.0 0.2 35 127 522 608 489 622 0.77 # 17129 # 22555 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.603 1_25 - 1809 AAA_30 PF13604.1 196 4.3e-45 147.2 11.0 2 2 3.5e-45 5.6e-43 140.4 5.9 2 188 1028 1218 1027 1225 0.96 # 17129 # 22555 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.603 2_11 - 229 ABC_tran PF00005.22 137 1.2e-24 80.8 0.0 1 1 1.1e-26 1.7e-24 80.2 0.0 6 137 24 171 21 171 0.94 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 TIGR03263 TIGR03263 180 0.0021 11.0 0.0 1 2 5e-05 0.0081 9.1 0.1 3 20 31 48 29 54 0.85 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 TIGR03263 TIGR03263 180 0.0021 11.0 0.0 2 2 0.06 9.7 -1.0 0.0 60 115 91 144 83 145 0.75 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_25 - 1809 AAA_19 PF13245.1 76 1.5e-06 21.5 0.4 1 1 8.6e-08 6.9e-06 19.4 0.4 13 75 1047 1105 1038 1106 0.71 # 17129 # 22555 # -1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.603 1_7 - 210 AAA_19 PF13245.1 76 7.1e-05 16.1 0.3 1 2 1.3e-05 0.0011 12.4 0.1 20 48 12 36 10 44 0.90 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_7 - 210 AAA_19 PF13245.1 76 7.1e-05 16.1 0.3 2 2 0.046 3.7 1.0 0.0 42 62 136 156 119 180 0.73 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 1_49 - 867 DUF463 PF04317.7 443 0.0011 11.1 0.2 1 1 1.3e-05 0.0021 10.2 0.2 2 27 482 507 481 513 0.91 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 3_5 - 243 RmlD_sub_bind PF04321.12 287 0.00064 12.2 0.2 1 1 7.7e-06 0.0012 11.3 0.2 4 50 11 75 7 90 0.88 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 3_5 - 243 NAD_binding_10 PF13460.1 183 4.2e-09 30.2 2.6 1 1 6.9e-11 1.1e-08 28.8 2.6 2 74 11 103 10 223 0.62 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 1_49 - 867 AAA_10 PF12846.2 304 5.3e-48 157.5 0.0 1 1 2.3e-49 9.2e-48 156.7 0.0 1 290 480 762 480 770 0.89 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 854 AAA_10 PF12846.2 304 8.6e-16 51.7 0.0 1 1 8.3e-17 3.3e-15 49.8 0.0 3 300 195 505 194 509 0.75 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 2_11 - 229 AAA_10 PF12846.2 304 0.00016 14.7 0.6 1 2 0.00026 0.01 8.8 0.1 4 19 32 47 30 59 0.87 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 AAA_10 PF12846.2 304 0.00016 14.7 0.6 2 2 0.0053 0.22 4.5 0.0 215 267 155 207 101 218 0.87 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_7 - 210 AAA_10 PF12846.2 304 0.00035 13.6 0.0 1 1 3.6e-05 0.0015 11.6 0.0 11 39 12 40 3 66 0.90 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 3_5 - 243 adh_short_C2 PF13561.1 241 5.4e-17 55.9 0.1 1 1 4.4e-19 7.1e-17 55.5 0.1 5 220 16 220 14 230 0.93 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 2_11 - 229 SbcCD_C PF13558.1 90 0.00031 14.2 0.1 1 1 3.9e-06 0.00063 13.3 0.1 61 89 158 186 133 187 0.86 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 3_5 - 243 3Beta_HSD PF01073.14 280 0.00069 11.9 0.3 1 1 5.5e-06 0.00088 11.6 0.3 1 68 11 76 11 122 0.72 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 2_8 - 235 DUF3584 PF12128.3 1201 0.00043 11.2 8.5 1 1 3.5e-06 0.00056 10.8 8.5 703 840 93 222 89 232 0.78 # 4845 # 5549 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 3_5 - 243 Epimerase PF01370.16 236 5.8e-08 26.0 0.2 1 1 5.5e-10 8.8e-08 25.4 0.2 2 117 11 140 10 148 0.79 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 1_26 - 854 DUF815 PF05673.8 250 0.00055 12.4 0.0 1 1 5.7e-06 0.00092 11.7 0.0 26 81 166 221 147 228 0.76 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 1_26 - 854 TrwB_AAD_bind PF10412.4 386 5.4e-148 486.2 0.0 1 1 8.5e-150 6.8e-148 485.9 0.0 2 386 180 568 179 568 0.99 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 1_49 - 867 TrwB_AAD_bind PF10412.4 386 4.8e-05 15.6 0.0 1 1 1.4e-06 0.00011 14.4 0.0 15 74 480 538 472 554 0.78 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 854 T4SS-DNA_transf PF02534.9 469 4.7e-15 48.6 0.0 1 1 8.1e-17 1.3e-14 47.1 0.0 251 451 372 574 259 592 0.82 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 1_77 - 698 Sulfotransfer_1 PF00685.22 267 7.2e-13 41.9 0.0 1 1 1.2e-14 2e-12 40.5 0.0 2 206 462 657 461 681 0.66 # 64185 # 66278 # -1 # ID=1_77;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_49 - 867 Pox_A32 PF04665.7 241 0.0015 11.4 0.0 1 1 1.7e-05 0.0028 10.5 0.0 12 39 479 506 472 524 0.85 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 3_5 - 243 TrkA_N PF02254.13 116 0.00015 15.4 0.3 1 1 1.9e-06 0.0003 14.4 0.3 8 58 18 71 10 76 0.85 # 5495 # 6223 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.484 1_7 - 210 AAA_24 PF13479.1 213 0.00032 13.9 0.0 1 1 3.1e-06 0.0005 13.3 0.0 11 77 10 86 1 92 0.79 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_11 - 229 NACHT PF05729.7 166 0.0016 11.7 0.4 1 1 5e-05 0.004 10.4 0.1 3 19 32 48 30 61 0.86 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_26 - 854 NACHT PF05729.7 166 0.0018 11.5 0.1 1 1 0.00014 0.011 8.9 0.0 4 28 197 221 195 226 0.88 # 22552 # 25113 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.578 2_11 - 229 AAA_25 PF13481.1 194 2.8e-06 20.4 0.8 1 1 6.6e-08 5.3e-06 19.5 0.1 30 139 26 129 21 136 0.72 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_7 - 210 AAA_25 PF13481.1 194 1.7e-05 17.8 0.1 1 1 5e-07 4e-05 16.6 0.0 42 107 11 59 4 94 0.72 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 2_7 - 161 ABC_tran_2 PF12848.2 85 0.0048 10.3 12.5 1 3 1.1e-05 0.0017 11.8 3.3 8 69 33 99 29 107 0.78 # 4352 # 4834 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 2_7 - 161 ABC_tran_2 PF12848.2 85 0.0048 10.3 12.5 2 3 0.002 0.33 4.5 7.7 22 76 76 132 75 143 0.80 # 4352 # 4834 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 2_7 - 161 ABC_tran_2 PF12848.2 85 0.0048 10.3 12.5 3 3 0.0093 1.5 2.4 3.1 26 64 104 140 95 156 0.59 # 4352 # 4834 # -1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.528 1_49 - 867 AAA_28 PF13521.1 163 0.00048 13.7 0.0 1 1 2e-05 0.0016 12.0 0.0 1 32 482 518 482 534 0.78 # 41633 # 44233 # -1 # ID=1_49;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.576 2_11 - 229 AAA_28 PF13521.1 163 0.00072 13.1 1.3 1 2 8.1e-05 0.0065 10.0 0.4 3 17 33 47 31 53 0.92 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 2_11 - 229 AAA_28 PF13521.1 163 0.00072 13.1 1.3 2 2 0.03 2.4 1.7 0.0 130 161 174 204 146 205 0.87 # 8311 # 8997 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.632 1_7 - 210 APS_kinase PF01583.15 157 0.0012 12.1 0.1 1 1 1.8e-05 0.0029 10.9 0.1 11 42 11 42 1 48 0.83 # 3945 # 4574 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.435 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/705b3c67-2a2d-470b-8d8b-a7373cf8dfc0 # Target file: checkm_output/bins/pn20/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn20/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/705b3c67-2a2d-470b-8d8b-a7373cf8dfc0 checkm_output/bins/pn20/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:13:01 2020 # [ok]