# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 226 UPF0020 PF01170.13 180 1.5e-06 20.6 0.0 1 2 8.1e-05 0.0071 8.6 0.0 102 124 16 38 3 89 0.70 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_29 - 226 UPF0020 PF01170.13 180 1.5e-06 20.6 0.0 2 2 2.9e-05 0.0025 10.1 0.0 27 54 162 188 158 216 0.72 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_75 - 764 cobW PF02492.14 178 0.0006 12.0 0.0 1 1 1.2e-05 0.0011 11.1 0.0 5 38 209 241 206 292 0.68 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_23 - 402 MipZ PF09140.6 261 5.3e-06 18.3 0.0 1 2 0.0027 0.23 3.1 0.0 3 50 111 163 109 193 0.73 # 22446 # 23651 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_23 - 402 MipZ PF09140.6 261 5.3e-06 18.3 0.0 2 2 2.8e-06 0.00024 12.9 0.0 87 136 233 282 220 305 0.87 # 22446 # 23651 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_37 - 185 SSB PF00436.20 104 6.9e-43 137.5 0.5 1 1 9.6e-45 8.3e-43 137.3 0.5 1 100 6 109 6 113 0.95 # 32413 # 32967 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_76 - 1768 UvrD_C_2 PF13538.1 104 1.1e-08 27.9 0.1 1 1 4.9e-10 4.3e-08 26.0 0.1 3 103 1347 1452 1345 1453 0.77 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_62 - 864 DUF87 PF01935.12 229 2.2e-05 17.1 0.0 1 1 1.8e-06 7.7e-05 15.3 0.0 26 213 477 655 474 670 0.64 # 48846 # 51437 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_75 - 764 DUF87 PF01935.12 229 0.00034 13.2 0.0 1 1 1.8e-05 0.0008 11.9 0.0 11 57 195 237 180 255 0.82 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_75 - 764 AAA_22 PF13401.1 131 0.0006 12.7 0.0 1 1 1.6e-05 0.0014 11.5 0.0 8 31 208 231 202 344 0.80 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_29 - 226 Methyltransf_11 PF08241.7 95 0.00077 12.7 0.0 1 3 0.045 3.9 0.8 0.0 46 65 4 25 2 28 0.77 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_29 - 226 Methyltransf_11 PF08241.7 95 0.00077 12.7 0.0 2 3 0.0035 0.3 4.4 0.0 78 93 53 68 46 70 0.83 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_29 - 226 Methyltransf_11 PF08241.7 95 0.00077 12.7 0.0 3 3 0.0066 0.57 3.5 0.0 5 41 172 207 168 223 0.74 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_78 - 244 MutS_V PF00488.16 235 0.00095 11.3 0.0 1 1 1.6e-05 0.0014 10.7 0.0 44 81 60 100 34 111 0.78 # 71789 # 72520 # 1 # ID=1_78;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.602 1_29 - 226 N6_N4_Mtase PF01555.13 231 3.7e-37 120.7 0.0 1 1 1.7e-36 1.5e-34 112.2 0.0 1 228 21 200 21 203 0.90 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_75 - 764 MobB PF03205.9 140 0.00076 11.9 0.0 1 1 2.1e-05 0.0018 10.7 0.0 5 33 209 237 206 243 0.86 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_75 - 764 Arch_ATPase PF01637.13 234 5.8e-05 15.6 0.0 1 1 1.2e-06 0.00011 14.7 0.0 27 76 211 254 203 335 0.83 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_75 - 764 AAA_16 PF13191.1 185 3.9e-05 16.4 0.0 1 1 2.9e-06 0.00013 14.7 0.0 22 55 202 236 198 296 0.90 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_62 - 864 AAA_16 PF13191.1 185 0.00013 14.7 0.0 1 1 1.4e-05 0.00059 12.6 0.0 26 56 476 507 461 595 0.86 # 48846 # 51437 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_23 - 402 CbiA PF01656.18 195 2.1e-18 59.1 0.0 1 1 4.9e-20 4.2e-18 58.1 0.0 1 141 111 291 111 328 0.75 # 22446 # 23651 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_76 - 1768 AAA PF00004.24 132 0.00044 13.2 0.5 1 3 0.084 7.3 -0.5 0.0 53 89 102 140 88 156 0.68 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_76 - 1768 AAA PF00004.24 132 0.00044 13.2 0.5 2 3 0.00081 0.07 6.1 0.0 3 24 992 1013 990 1088 0.66 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_76 - 1768 AAA PF00004.24 132 0.00044 13.2 0.5 3 3 0.019 1.6 1.7 0.0 29 100 1625 1696 1586 1725 0.76 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_79 - 106 NAD_binding_11 PF14833.1 122 0.00068 12.4 0.0 1 1 1.1e-05 0.00092 12.0 0.0 54 100 28 74 22 80 0.86 # 72736 # 73053 # 1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.538 1_48 - 275 N6_Mtase PF02384.11 311 2.6e-12 39.1 0.0 1 1 4.6e-14 4e-12 38.4 0.0 25 117 139 234 130 250 0.88 # 39467 # 40291 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_75 - 764 TraG-D_C PF12696.2 128 1.7e-19 62.7 0.0 1 1 3.4e-21 3e-19 61.9 0.0 1 126 439 560 439 562 0.83 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_23 - 402 AAA_31 PF13614.1 157 0.00049 12.8 0.0 1 1 3.1e-05 0.0027 10.3 0.0 108 147 235 273 231 279 0.86 # 22446 # 23651 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_75 - 764 AAA_33 PF13671.1 143 0.00058 12.5 0.0 1 1 1.9e-05 0.0017 11.0 0.0 3 24 208 229 207 276 0.91 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_29 - 226 Methyltransf_26 PF13659.1 117 7.2e-13 41.3 0.1 1 2 1e-07 4.4e-06 19.5 0.0 53 112 3 69 2 74 0.75 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_29 - 226 Methyltransf_26 PF13659.1 117 7.2e-13 41.3 0.1 2 2 8.1e-08 3.5e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_48 - 275 Methyltransf_26 PF13659.1 117 0.0004 13.2 0.0 1 1 5.3e-05 0.0023 10.7 0.0 4 63 169 235 167 264 0.81 # 39467 # 40291 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.524 1_76 - 1768 AAA_30 PF13604.1 196 1.8e-41 134.6 2.0 1 2 0.00013 0.011 7.9 1.0 13 127 438 546 405 562 0.79 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_76 - 1768 AAA_30 PF13604.1 196 1.8e-41 134.6 2.0 2 2 2e-43 1.8e-41 134.6 2.0 2 186 971 1158 970 1162 0.91 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_62 - 864 ABC_tran PF00005.22 137 0.00074 12.5 0.0 1 1 2.1e-05 0.0018 11.3 0.0 13 96 476 599 472 614 0.60 # 48846 # 51437 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_29 - 226 Cons_hypoth95 PF03602.10 183 6.7e-06 18.3 0.0 1 2 0.00019 0.016 7.2 0.0 112 167 18 75 2 82 0.67 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_29 - 226 Cons_hypoth95 PF03602.10 183 6.7e-06 18.3 0.0 2 2 5e-05 0.0043 9.1 0.0 41 62 162 183 145 213 0.80 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_76 - 1768 AAA_19 PF13245.1 76 6.3e-08 25.1 2.4 1 2 0.075 6.5 -0.6 0.0 20 60 450 490 444 499 0.76 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_76 - 1768 AAA_19 PF13245.1 76 6.3e-08 25.1 2.4 2 2 1e-08 8.8e-07 21.4 0.3 9 76 986 1049 977 1049 0.78 # 65904 # 71207 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_62 - 864 AAA_10 PF12846.2 304 3.8e-45 147.3 0.0 1 1 1.9e-46 8.2e-45 146.2 0.0 1 291 474 760 474 767 0.89 # 48846 # 51437 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_75 - 764 AAA_10 PF12846.2 304 4.5e-17 55.1 0.1 1 1 3.5e-18 1.5e-16 53.3 0.1 3 299 206 517 205 520 0.81 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_75 - 764 TrwB_AAD_bind PF10412.4 386 1.9e-150 493.4 0.0 1 1 5.5e-152 2.4e-150 493.1 0.0 2 386 191 581 190 581 0.99 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_62 - 864 TrwB_AAD_bind PF10412.4 386 3.2e-05 15.3 0.0 1 1 1.5e-06 6.4e-05 14.4 0.0 16 71 475 536 470 545 0.79 # 48846 # 51437 # 1 # ID=1_62;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.546 1_75 - 764 T4SS-DNA_transf PF02534.9 469 3.8e-12 38.1 0.0 1 1 1.2e-12 1e-10 33.5 0.0 131 395 282 529 269 594 0.73 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_29 - 226 MethyltransfD12 PF02086.10 260 0.00022 13.4 0.0 1 2 0.013 1.1 1.3 0.0 176 188 19 31 12 92 0.81 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_29 - 226 MethyltransfD12 PF02086.10 260 0.00022 13.4 0.0 2 2 2.8e-05 0.0024 10.0 0.0 20 46 163 189 148 197 0.79 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_75 - 764 GTP_EFTU PF00009.22 188 0.00049 12.3 0.0 1 2 0.00053 0.046 5.8 0.0 2 28 203 229 202 251 0.90 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_75 - 764 GTP_EFTU PF00009.22 188 0.00049 12.3 0.0 2 2 0.002 0.18 3.9 0.0 51 85 354 386 333 394 0.89 # 63613 # 65904 # 1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.519 1_29 - 226 Methyltransf_15 PF09445.5 164 0.00093 11.5 0.0 1 2 0.035 3 0.1 0.0 53 79 4 29 2 33 0.90 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 1_29 - 226 Methyltransf_15 PF09445.5 164 0.00093 11.5 0.0 2 2 7.1e-05 0.0062 8.8 0.0 3 31 166 194 164 207 0.86 # 27615 # 28292 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.586 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/903b0f05-6791-4dab-8987-c01bf2c92134 # Target file: checkm_output/bins/pn181/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn181/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/903b0f05-6791-4dab-8987-c01bf2c92134 checkm_output/bins/pn181/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:12:51 2020 # [ok]