# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_1 - 106 UPF0054 PF02130.12 145 0.00031 13.3 0.0 1 1 3.1e-06 0.00041 12.9 0.0 80 116 25 60 5 63 0.82 # 2 # 319 # 1 # ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.563 1_26 - 228 UPF0020 PF01170.13 180 1.9e-05 17.6 0.0 1 2 0.00028 0.036 6.9 0.0 103 121 17 35 4 89 0.71 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 228 UPF0020 PF01170.13 180 1.9e-05 17.6 0.0 2 2 7.3e-05 0.0096 8.8 0.0 28 54 163 189 160 221 0.66 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_5 - 181 cobW PF02492.14 178 0.0011 11.7 0.0 1 1 1.3e-05 0.0017 11.1 0.0 2 22 2 22 1 30 0.79 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_19 - 211 MipZ PF09140.6 261 8.1e-09 28.2 0.2 1 3 7.2e-07 9.5e-05 14.8 0.1 5 51 7 53 3 59 0.89 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_19 - 211 MipZ PF09140.6 261 8.1e-09 28.2 0.2 2 3 1.2e-05 0.0016 10.8 0.0 88 135 69 116 58 151 0.82 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_19 - 211 MipZ PF09140.6 261 8.1e-09 28.2 0.2 3 3 0.066 8.7 -1.4 0.0 206 237 161 193 137 202 0.76 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_35 - 176 SSB PF00436.20 104 8.6e-41 131.4 0.4 1 1 8.6e-43 1.1e-40 131.0 0.4 1 101 6 109 6 112 0.96 # 23378 # 23905 # 1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.593 1_79 - 383 DUF87 PF01935.12 229 0.00081 12.5 0.0 1 1 1.1e-05 0.0015 11.7 0.0 28 56 162 191 161 192 0.88 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 383 AAA_22 PF13401.1 131 1.3e-05 18.6 0.0 1 1 7.4e-07 3.2e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 3_5 - 181 AAA_22 PF13401.1 131 2.2e-05 17.9 0.0 1 1 9.9e-07 4.4e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_34 - 518 AAA_22 PF13401.1 131 0.00035 14.0 0.0 1 1 1.9e-05 0.00084 12.8 0.0 6 28 227 249 222 330 0.77 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 ATP_bind_1 PF03029.12 238 6.1e-05 15.9 0.0 1 1 7.2e-07 9.5e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_3 - 567 DNA_methylase PF00145.12 335 3.7e-79 259.5 0.0 1 1 7.6e-81 1e-78 258.1 0.0 1 331 185 546 185 549 0.86 # 1645 # 3345 # -1 # ID=2_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_26 - 228 N6_N4_Mtase PF01555.13 231 9.2e-36 116.7 0.0 1 2 7.6e-15 1e-12 41.3 0.0 1 114 21 124 21 137 0.89 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 228 N6_N4_Mtase PF01555.13 231 9.2e-36 116.7 0.0 2 2 9.2e-25 1.2e-22 73.8 0.0 169 228 141 200 126 203 0.90 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_5 - 181 AAA_17 PF13207.1 121 8.1e-07 23.2 0.1 1 1 3.5e-08 1.5e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_79 - 383 AAA_17 PF13207.1 121 2.5e-05 18.4 0.1 1 1 7.1e-06 0.00031 14.9 0.0 3 47 161 208 161 251 0.76 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_34 - 518 AAA_17 PF13207.1 121 2.9e-05 18.2 0.2 1 1 3.1e-06 0.00014 16.0 0.0 1 24 227 255 227 345 0.72 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 MobB PF03205.9 140 2.5e-05 17.3 0.0 1 2 0.017 2.2 1.3 0.0 14 60 61 108 61 127 0.88 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_79 - 383 MobB PF03205.9 140 2.5e-05 17.3 0.0 2 2 3.1e-06 0.00041 13.4 0.0 5 26 162 183 160 193 0.90 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_19 - 211 ArsA_ATPase PF02374.10 305 0.00038 12.8 1.2 1 2 7.6e-06 0.001 11.4 0.8 5 32 7 34 1 48 0.85 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_19 - 211 ArsA_ATPase PF02374.10 305 0.00038 12.8 1.2 2 2 0.04 5.3 -0.8 0.0 108 134 57 87 35 89 0.66 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 2_34 - 518 T2SE PF00437.15 272 3.2e-41 134.3 0.1 1 1 9.6e-43 6.3e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 T2SE PF00437.15 272 1.1e-35 116.2 0.0 1 1 2.4e-37 1.6e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_34 - 518 G-alpha PF00503.15 389 0.00083 11.3 0.0 1 2 0.054 7.2 -1.6 0.0 234 272 70 113 29 117 0.79 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_34 - 518 G-alpha PF00503.15 389 0.00083 11.3 0.0 2 2 1.9e-05 0.0025 9.8 0.0 58 87 225 254 214 325 0.84 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 3_5 - 181 Cytidylate_kin2 PF13189.1 179 0.00061 13.0 0.0 1 2 6.6e-05 0.0087 9.3 0.0 1 23 2 24 2 46 0.78 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 Cytidylate_kin2 PF13189.1 179 0.00061 13.0 0.0 2 2 0.015 2 1.6 0.0 112 135 99 122 91 136 0.77 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 Zeta_toxin PF06414.7 201 6e-05 15.5 0.0 1 2 4.7e-06 0.00062 12.2 0.0 19 53 3 35 1 120 0.83 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 Zeta_toxin PF06414.7 201 6e-05 15.5 0.0 2 2 0.024 3.1 0.1 0.0 45 74 106 133 95 150 0.73 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_34 - 518 AAA_16 PF13191.1 185 0.00012 15.4 0.0 1 1 6.4e-06 0.00042 13.6 0.0 8 51 213 252 212 301 0.78 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 AAA_16 PF13191.1 185 0.00039 13.7 0.0 1 1 1.2e-05 0.00081 12.7 0.0 27 52 160 188 148 282 0.82 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_34 - 518 AAA_23 PF13476.1 202 0.00017 15.3 0.2 1 1 9.7e-06 0.00064 13.4 0.0 20 38 226 244 208 249 0.84 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 AAA_23 PF13476.1 202 0.00029 14.5 0.0 1 1 7.3e-06 0.00048 13.8 0.0 19 40 157 178 142 209 0.83 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 3_5 - 181 AAA_18 PF13238.1 129 8.9e-11 35.5 0.0 1 1 3.6e-12 1.6e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_79 - 383 AAA_18 PF13238.1 129 2e-05 18.2 0.0 1 1 9e-07 4e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_34 - 518 AAA_18 PF13238.1 129 0.00043 13.9 0.0 1 1 3.2e-05 0.0014 12.2 0.0 1 18 228 245 228 316 0.86 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 211 CbiA PF01656.18 195 8.3e-16 51.2 0.1 1 1 1.5e-17 2e-15 50.0 0.1 3 178 7 164 5 180 0.75 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 3_5 - 181 AAA_14 PF13173.1 128 0.00078 12.7 0.0 1 1 2.3e-05 0.0015 11.7 0.0 4 27 2 25 1 54 0.79 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 2_34 - 518 AAA_14 PF13173.1 128 0.001 12.3 0.0 1 1 7.4e-05 0.0049 10.1 0.0 5 30 228 254 225 286 0.80 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_34 - 518 AAA_29 PF13555.1 62 3.7e-05 16.5 0.0 1 1 1.1e-06 7.6e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 AAA_29 PF13555.1 62 5.1e-05 16.1 0.0 1 1 2.3e-06 0.00015 14.6 0.0 26 44 160 178 151 186 0.83 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_34 - 518 AAA PF00004.24 132 0.00033 14.2 0.1 1 2 0.00065 0.043 7.3 0.0 1 21 228 248 228 278 0.83 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_34 - 518 AAA PF00004.24 132 0.00033 14.2 0.1 2 2 0.034 2.3 1.8 0.0 9 66 442 508 436 515 0.64 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_19 - 211 AAA PF00004.24 132 0.0011 12.5 0.0 1 1 2.9e-05 0.0019 11.7 0.0 8 38 13 55 9 104 0.73 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_54 - 764 TraG-D_C PF12696.2 128 6.9e-07 22.5 0.2 1 1 1.2e-08 1.6e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 39869 # 42160 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_19 - 211 AAA_31 PF13614.1 157 1.2e-06 21.8 0.0 1 2 8.4e-07 0.00011 15.5 0.0 2 44 4 46 4 61 0.86 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 1_19 - 211 AAA_31 PF13614.1 157 1.2e-06 21.8 0.0 2 2 0.0023 0.3 4.3 0.0 112 151 72 112 57 117 0.82 # 14351 # 14983 # 1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.469 3_5 - 181 AAA_33 PF13671.1 143 7.6e-11 35.4 0.0 1 1 7.3e-13 9.6e-11 35.0 0.0 2 127 3 130 2 151 0.75 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_26 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 37.8 0.1 1 2 2.6e-07 3.4e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 228 Methyltransf_26 PF13659.1 117 1.4e-11 37.8 0.1 2 2 9.7e-08 1.3e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_34 - 518 AAA_30 PF13604.1 196 0.00042 13.2 0.0 1 1 5.8e-06 0.00076 12.4 0.0 4 44 211 251 209 276 0.84 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_43 - 194 DNA_pol3_delta PF06144.8 172 2.7e-06 20.3 0.0 1 1 3e-08 3.9e-06 19.8 0.0 35 99 91 151 73 178 0.80 # 39846 # 40427 # 1 # ID=2_43;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.404 2_34 - 518 ABC_tran PF00005.22 137 9.9e-05 16.0 0.0 1 1 5.3e-06 0.00035 14.2 0.0 12 37 226 251 217 288 0.81 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 ABC_tran PF00005.22 137 0.00015 15.4 0.0 1 1 4.3e-06 0.00028 14.5 0.0 16 35 162 181 152 211 0.87 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 3_5 - 181 TIGR03263 TIGR03263 180 0.00096 11.8 0.0 1 1 1.6e-05 0.0021 10.7 0.0 3 26 2 25 1 31 0.81 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_26 - 228 Cons_hypoth95 PF03602.10 183 9.8e-06 18.3 0.0 1 2 0.00027 0.035 6.8 0.0 112 168 18 76 9 83 0.68 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 228 Cons_hypoth95 PF03602.10 183 9.8e-06 18.3 0.0 2 2 3.5e-05 0.0046 9.6 0.0 41 62 162 183 144 218 0.77 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_34 - 518 DAP3 PF10236.4 309 0.00082 11.6 0.0 1 1 1.2e-05 0.0016 10.7 0.0 21 42 223 244 215 253 0.86 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_34 - 518 AAA_19 PF13245.1 76 0.00013 15.1 0.0 1 1 5.3e-06 0.00035 13.7 0.0 10 46 226 259 218 268 0.79 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 3_5 - 181 AAA_19 PF13245.1 76 0.00031 13.8 0.0 1 1 1.6e-05 0.0011 12.1 0.0 15 33 5 22 2 38 0.84 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_66 - 1015 AAA_10 PF12846.2 304 1.5e-30 99.9 0.0 1 1 1e-31 3.5e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 52109 # 55153 # -1 # ID=1_66;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.508 1_54 - 764 AAA_10 PF12846.2 304 3.4e-05 16.6 1.0 1 1 3.1e-06 0.0001 15.1 1.0 2 287 137 501 136 514 0.62 # 39869 # 42160 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 2_34 - 518 AAA_10 PF12846.2 304 0.0003 13.6 0.0 1 1 1.7e-05 0.00055 12.7 0.0 4 30 228 256 226 320 0.81 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_79 - 383 AAA_10 PF12846.2 304 0.00067 12.4 0.0 1 1 4e-05 0.0013 11.4 0.0 2 21 158 177 157 196 0.83 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_50 - 283 Methyltransf_27 PF13708.1 194 1.6e-66 216.8 0.0 1 1 1.6e-68 2.1e-66 216.4 0.0 2 194 85 278 84 278 0.96 # 35288 # 36136 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_54 - 764 TrwB_AAD_bind PF10412.4 386 3e-06 19.3 0.2 1 2 9.3e-05 0.012 7.4 0.0 11 32 132 153 126 157 0.84 # 39869 # 42160 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_54 - 764 TrwB_AAD_bind PF10412.4 386 3e-06 19.3 0.2 2 2 3e-05 0.004 9.0 0.1 247 332 440 525 427 555 0.88 # 39869 # 42160 # -1 # ID=1_54;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.498 1_26 - 228 MethyltransfD12 PF02086.10 260 0.00045 13.0 0.0 1 2 0.014 1.9 1.1 0.0 175 188 18 31 8 91 0.80 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 228 MethyltransfD12 PF02086.10 260 0.00045 13.0 0.0 2 2 3.3e-05 0.0044 9.7 0.0 16 46 157 189 148 197 0.78 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_79 - 383 RNA_helicase PF00910.17 107 0.00013 15.5 0.0 1 1 3.8e-06 0.00025 14.5 0.0 2 28 161 187 160 205 0.83 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 3_5 - 181 RNA_helicase PF00910.17 107 0.00076 13.0 0.0 1 1 1.8e-05 0.0012 12.3 0.0 1 26 3 28 3 47 0.84 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 UPF0079 PF02367.12 123 0.00027 13.9 0.0 1 1 3.3e-06 0.00044 13.2 0.0 17 36 2 21 1 30 0.88 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 AAA_24 PF13479.1 213 9.5e-05 15.3 0.0 1 1 1.4e-06 0.00018 14.4 0.0 6 33 3 34 1 73 0.90 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 NACHT PF05729.7 166 2e-05 17.6 0.0 1 2 7.7e-07 0.0001 15.3 0.0 2 22 2 22 1 37 0.89 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 NACHT PF05729.7 166 2e-05 17.6 0.0 2 2 0.045 6 -0.2 0.0 77 91 151 177 95 179 0.61 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_79 - 383 AAA_25 PF13481.1 194 0.00026 13.7 0.0 1 1 7e-06 0.00046 12.9 0.0 24 58 148 182 124 207 0.78 # 66015 # 67163 # -1 # ID=1_79;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 2_34 - 518 AAA_25 PF13481.1 194 0.00037 13.2 0.1 1 2 8.7e-05 0.0058 9.3 0.0 25 65 217 260 200 270 0.72 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 2_34 - 518 AAA_25 PF13481.1 194 0.00037 13.2 0.1 2 2 0.039 2.6 0.7 0.0 153 190 297 337 292 340 0.74 # 28812 # 30365 # 1 # ID=2_34;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_26 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 1 2 0.045 5.9 -0.3 0.0 53 79 4 29 2 32 0.90 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_26 - 228 Methyltransf_15 PF09445.5 164 0.001 11.9 0.0 2 2 4.2e-05 0.0056 9.5 0.0 3 31 166 194 164 209 0.86 # 18934 # 19617 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_5 - 181 AAA_28 PF13521.1 163 0.00018 14.8 0.0 1 1 2.9e-06 0.00039 13.7 0.0 2 30 3 34 2 165 0.89 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 APS_kinase PF01583.15 157 1.8e-05 17.7 0.0 1 2 7.3e-06 0.00097 12.1 0.0 4 24 2 22 1 35 0.87 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 3_5 - 181 APS_kinase PF01583.15 157 1.8e-05 17.7 0.0 2 2 0.0032 0.43 3.5 0.1 34 73 107 148 95 160 0.86 # 5833 # 6375 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4e4a0274-a386-4cbc-b609-0173d4951afa # Target file: checkm_output/bins/pn177/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn177/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4e4a0274-a386-4cbc-b609-0173d4951afa checkm_output/bins/pn177/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:12:48 2020 # [ok]