# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_43 - 673 UPF0020 PF01170.13 180 8e-05 15.3 0.0 1 2 0.0026 0.28 3.7 0.0 28 50 428 450 425 490 0.87 # 29304 # 31322 # -1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_43 - 673 UPF0020 PF01170.13 180 8e-05 15.3 0.0 2 2 7.2e-05 0.0078 8.8 0.0 86 116 555 585 550 589 0.91 # 29304 # 31322 # -1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_3 - 495 Terminase_6 PF03237.10 384 1.9e-06 19.8 0.1 1 1 3.9e-08 4.2e-06 18.7 0.1 6 317 58 380 55 426 0.74 # 1591 # 3075 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_51 - 399 MipZ PF09140.6 261 6.6e-09 28.2 0.1 1 2 4.6e-05 0.005 8.9 0.0 1 51 109 164 109 187 0.77 # 37274 # 38470 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_51 - 399 MipZ PF09140.6 261 6.6e-09 28.2 0.1 2 2 1.4e-07 1.5e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 37274 # 38470 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_90 - 163 SSB PF00436.20 104 3.9e-43 138.6 0.3 1 1 4.6e-45 5.1e-43 138.3 0.3 1 100 6 109 6 113 0.96 # 74269 # 74757 # -1 # ID=1_90;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_65 - 260 tRNA_anti-like PF12869.2 144 1.3e-07 24.2 0.0 1 1 1.9e-09 2.1e-07 23.6 0.0 48 143 61 154 31 155 0.82 # 49789 # 50568 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.336 1_43 - 673 DNA_methylase PF00145.12 335 1.7e-39 128.8 0.0 1 3 1.4e-25 1.5e-23 76.4 0.0 5 119 8 135 6 145 0.92 # 29304 # 31322 # -1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_43 - 673 DNA_methylase PF00145.12 335 1.7e-39 128.8 0.0 2 3 6.5e-09 7.1e-07 21.6 0.4 136 162 192 218 187 256 0.84 # 29304 # 31322 # -1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_43 - 673 DNA_methylase PF00145.12 335 1.7e-39 128.8 0.0 3 3 9.8e-09 1.1e-06 21.0 0.0 264 333 280 380 229 382 0.55 # 29304 # 31322 # -1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_94 - 2256 Helicase_C PF00271.26 78 7.2e-09 28.5 0.0 1 1 1.6e-10 1.8e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 78573 # 85340 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_51 - 399 ArsA_ATPase PF02374.10 305 0.00048 12.2 0.0 1 1 1.2e-05 0.0013 10.8 0.0 4 52 111 166 108 255 0.74 # 37274 # 38470 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_84 - 640 AAA_13 PF13166.1 712 0.011 7.1 11.7 1 2 1.3e-05 0.0014 10.1 7.4 377 466 198 282 152 283 0.75 # 66994 # 68913 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_84 - 640 AAA_13 PF13166.1 712 0.011 7.1 11.7 2 2 0.093 10 -2.7 0.1 366 389 568 591 530 632 0.46 # 66994 # 68913 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_51 - 399 CbiA PF01656.18 195 1.1e-20 66.8 0.0 1 1 1.8e-22 2e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 37274 # 38470 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_39 - 455 KaiC PF06745.8 227 2.5e-06 19.8 0.0 1 1 5.6e-08 6.1e-06 18.5 0.0 4 66 185 253 183 279 0.87 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_94 - 2256 N6_Mtase PF02384.11 311 2.6e-10 32.8 0.0 1 1 2.9e-11 3.2e-09 29.2 0.0 93 249 145 291 73 296 0.76 # 78573 # 85340 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_51 - 399 AAA_31 PF13614.1 157 5.8e-07 22.6 0.0 1 2 0.0009 0.049 6.6 0.0 2 63 110 176 109 222 0.75 # 37274 # 38470 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_51 - 399 AAA_31 PF13614.1 157 5.8e-07 22.6 0.0 2 2 6e-06 0.00033 13.7 0.0 108 138 235 265 231 277 0.85 # 37274 # 38470 # 1 # ID=1_51;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_39 - 455 AAA_31 PF13614.1 157 6.6e-05 15.9 0.0 1 1 2.9e-06 0.00016 14.7 0.0 5 43 210 249 208 260 0.89 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_39 - 455 AAA_33 PF13671.1 143 0.0002 14.3 0.2 1 3 0.088 9.6 -0.9 0.0 46 79 134 172 102 181 0.69 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_39 - 455 AAA_33 PF13671.1 143 0.0002 14.3 0.2 2 3 4e-05 0.0043 10.0 0.0 2 42 209 248 208 326 0.60 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_39 - 455 AAA_33 PF13671.1 143 0.0002 14.3 0.2 3 3 0.034 3.7 0.4 0.1 88 123 350 383 333 395 0.68 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_39 - 455 DnaB_C PF03796.10 259 4.1e-109 356.4 0.2 1 1 5.6e-111 6.1e-109 355.8 0.2 1 257 188 445 188 447 0.98 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_94 - 2256 Methyltransf_26 PF13659.1 117 1.8e-09 30.7 1.3 1 1 1.6e-10 8.8e-09 28.5 0.0 5 116 116 225 113 226 0.81 # 78573 # 85340 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_43 - 673 Methyltransf_26 PF13659.1 117 9e-06 18.8 0.0 1 1 4.7e-07 2.6e-05 17.3 0.0 1 83 429 588 429 643 0.69 # 29304 # 31322 # -1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_3 - 495 AAA_30 PF13604.1 196 4.1e-05 16.3 0.0 1 1 3.7e-06 0.00041 13.0 0.0 5 127 37 189 35 194 0.70 # 1591 # 3075 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.479 1_39 - 455 FtsK_SpoIIIE PF01580.13 205 0.00027 13.5 0.2 1 2 6.7e-05 0.0073 8.8 0.0 36 67 204 235 180 243 0.81 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_39 - 455 FtsK_SpoIIIE PF01580.13 205 0.00027 13.5 0.2 2 2 0.011 1.2 1.5 0.1 71 125 319 367 313 400 0.74 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_94 - 2256 Eco57I PF07669.6 106 4.2e-05 16.9 0.0 1 1 1.6e-06 0.00018 14.9 0.0 3 101 174 271 172 276 0.87 # 78573 # 85340 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_39 - 455 AAA_19 PF13245.1 76 0.00065 12.5 0.0 1 1 1.5e-05 0.0016 11.2 0.0 9 48 205 241 198 264 0.82 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_64 - 106 Ribosomal_S6 PF01250.12 92 0.00028 13.8 0.1 1 1 3.4e-06 0.00037 13.4 0.1 16 79 32 101 26 105 0.82 # 49464 # 49781 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.305 1_84 - 640 Kinesin-relat_1 PF12711.2 86 0.002 11.6 5.3 1 2 0.004 0.44 4.1 0.5 8 42 196 230 191 236 0.81 # 66994 # 68913 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_84 - 640 Kinesin-relat_1 PF12711.2 86 0.002 11.6 5.3 2 2 0.00015 0.017 8.6 0.4 7 37 251 281 246 284 0.91 # 66994 # 68913 # 1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_43 - 673 MethyltransfD12 PF02086.10 260 2.4e-57 187.3 0.0 1 1 2.7e-59 2.9e-57 187.0 0.0 1 248 411 642 411 654 0.93 # 29304 # 31322 # -1 # ID=1_43;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.496 1_89 - 226 EFP PF01132.15 55 0.00051 12.8 0.0 1 1 1e-05 0.0011 11.7 0.0 23 53 133 163 133 164 0.90 # 73394 # 74071 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.460 1_90 - 163 tRNA_anti-codon PF01336.20 75 0.00069 12.5 0.0 1 1 1e-05 0.0011 11.9 0.0 31 61 58 92 53 112 0.82 # 74269 # 74757 # -1 # ID=1_90;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_39 - 455 AAA_25 PF13481.1 194 2.6e-15 49.3 0.0 1 1 4.6e-17 5e-15 48.4 0.0 13 190 187 368 174 372 0.83 # 24748 # 26112 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_94 - 2256 SNF2_N PF00176.18 299 1.9e-18 59.2 0.0 1 1 4.3e-20 4.7e-18 58.0 0.0 27 294 849 1263 835 1268 0.86 # 78573 # 85340 # 1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/24179225-769c-401a-9126-22ffc13e48d4 # Target file: checkm_output/bins/pn136/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pn136/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/24179225-769c-401a-9126-22ffc13e48d4 checkm_output/bins/pn136/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:12:24 2020 # [ok]