# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 357 cobW PF02492.14 178 2.2e-05 14.7 0.2 1 1 1.8e-06 3.9e-05 13.9 0.2 2 34 31 63 30 71 0.75 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 ABC_ATPase PF09818.4 448 3.3e-05 13.3 0.2 1 2 7.5e-05 0.0016 7.7 0.1 240 265 24 50 11 52 0.91 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 ABC_ATPase PF09818.4 448 3.3e-05 13.3 0.2 2 2 0.0026 0.056 2.6 0.0 380 414 182 216 138 228 0.82 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 NB-ARC PF00931.17 287 4.6e-05 13.1 0.1 1 1 3.5e-06 7.7e-05 12.3 0.1 17 40 27 50 17 59 0.82 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_22 PF13401.1 131 2.3e-06 18.6 0.2 1 1 6.4e-07 1.4e-05 16.0 0.2 5 37 30 79 26 202 0.62 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_15 PF13175.1 415 6.3e-07 19.4 0.0 1 2 8.9e-05 0.002 7.9 0.0 13 43 20 60 16 122 0.76 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_15 PF13175.1 415 6.3e-07 19.4 0.0 2 2 2.8e-05 0.00062 9.6 0.0 369 410 155 198 143 200 0.80 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_17 PF13207.1 121 2.1e-05 16.1 0.3 1 1 2.2e-06 4.8e-05 15.0 0.3 4 20 34 50 31 183 0.88 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_21 PF13304.1 303 1.1e-12 39.2 0.1 1 2 3.5e-07 7.6e-06 16.8 0.1 4 24 34 54 31 91 0.70 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_21 PF13304.1 303 1.1e-12 39.2 0.1 2 2 2.5e-08 5.6e-07 20.5 0.0 224 298 127 199 97 204 0.80 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 Miro PF08477.8 119 8.4e-06 17.1 0.0 1 1 6.2e-07 1.4e-05 16.4 0.0 2 26 32 64 31 96 0.75 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 MobB PF03205.9 140 5.1e-05 13.8 0.0 1 1 9.9e-06 0.00022 11.7 0.0 2 21 31 50 30 58 0.90 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 PhoH PF02562.11 205 0.00018 11.6 0.0 1 1 2.4e-05 0.00054 10.0 0.0 15 52 25 60 18 77 0.73 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 SMC_N PF02463.14 220 2.8e-05 14.2 0.0 1 2 0.00026 0.0056 6.6 0.0 25 44 30 49 20 57 0.86 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 SMC_N PF02463.14 220 2.8e-05 14.2 0.0 2 2 0.00055 0.012 5.5 0.0 135 187 132 186 77 218 0.69 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 Arch_ATPase PF01637.13 234 9e-05 13.0 0.1 1 1 6.6e-06 0.00015 12.3 0.1 20 42 29 51 19 69 0.81 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_16 PF13191.1 185 2.8e-07 21.4 1.3 1 1 4.2e-08 9.2e-07 19.8 1.3 23 63 28 70 19 196 0.62 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_23 PF13476.1 202 7.2e-05 13.9 0.0 1 1 6.8e-06 0.00015 12.9 0.0 21 39 31 49 18 52 0.78 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_18 PF13238.1 129 5.2e-05 14.4 0.0 1 1 5e-06 0.00011 13.3 0.0 2 26 33 62 32 126 0.78 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_29 PF13555.1 62 2e-07 21.3 0.1 1 1 2.5e-08 5.5e-07 19.9 0.1 15 44 22 50 18 61 0.82 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA PF00004.24 132 3.5e-05 14.8 0.0 1 1 4.9e-06 0.00011 13.2 0.1 2 20 33 51 32 76 0.91 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 DUF258 PF03193.11 161 2.9e-06 17.3 0.1 1 1 4.2e-07 9.2e-06 15.7 0.0 25 60 18 62 3 142 0.67 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 DLIC PF05783.6 472 0.0002 10.8 0.1 1 1 1.4e-05 0.00031 10.2 0.1 21 55 25 59 17 63 0.90 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_33 PF13671.1 143 7e-06 16.8 0.1 1 1 4.7e-07 1e-05 16.2 0.1 1 21 31 51 31 185 0.86 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_30 PF13604.1 196 9.1e-05 12.8 0.1 1 1 7.2e-06 0.00016 12.1 0.1 17 45 29 56 22 65 0.73 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 ABC_tran PF00005.22 137 3.2e-39 125.2 0.0 1 1 2.2e-40 4.9e-39 124.5 0.0 1 136 19 167 19 168 0.97 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_19 PF13245.1 76 9.5e-06 16.2 0.2 1 1 1e-06 2.3e-05 14.9 0.2 10 35 29 53 22 67 0.76 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 PduV-EutP PF10662.4 143 0.00025 11.3 0.0 1 1 2e-05 0.00044 10.5 0.0 4 25 32 53 30 70 0.87 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 UPF0079 PF02367.12 123 1.7e-06 18.5 0.2 1 1 1.7e-07 3.8e-06 17.4 0.2 8 36 22 50 18 60 0.88 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 NACHT PF05729.7 166 1.5e-05 15.5 0.2 1 2 2.6e-06 5.8e-05 13.6 0.0 2 21 31 50 30 57 0.89 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 NACHT PF05729.7 166 1.5e-05 15.5 0.2 2 2 0.068 1.5 -0.8 0.0 90 127 163 198 102 211 0.79 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_25 PF13481.1 194 2.2e-05 14.7 0.1 1 1 2e-06 4.5e-05 13.7 0.1 29 54 25 50 13 61 0.83 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_17 - 357 AAA_28 PF13521.1 163 8e-05 13.4 0.2 1 1 7.2e-06 0.00016 12.4 0.2 2 22 32 52 31 64 0.83 # 11713 # 12783 # -1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/c2d470ee-e76a-4874-a4d0-4f54bb46f418 # Target file: checkm_output/bins/pm997/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm997/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/c2d470ee-e76a-4874-a4d0-4f54bb46f418 checkm_output/bins/pm997/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:57 2020 # [ok]