# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_8 - 722 UPF0020 PF01170.13 180 3.3e-08 26.0 0.0 1 1 7.3e-10 6.1e-08 25.1 0.0 30 122 229 327 225 334 0.75 # 7936 # 10101 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 2_6 - 402 MipZ PF09140.6 261 1.6e-06 20.0 0.0 1 2 0.0027 0.22 3.1 0.0 3 50 111 163 109 193 0.73 # 4657 # 5862 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 2_6 - 402 MipZ PF09140.6 261 1.6e-06 20.0 0.0 2 2 8.7e-07 7.3e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 4657 # 5862 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 4_11 - 562 3HCDH_N PF02737.13 180 0.013 7.7 6.6 1 2 0.0086 0.72 2.1 2.8 1 30 100 129 100 133 0.93 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 3HCDH_N PF02737.13 180 0.013 7.7 6.6 2 2 0.0003 0.025 6.9 0.1 2 36 273 307 272 359 0.75 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 GIDA PF01134.17 392 2.2e-06 19.4 5.3 1 2 2.6e-08 2.2e-06 19.4 5.3 1 53 100 154 100 290 0.87 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 GIDA PF01134.17 392 2.2e-06 19.4 5.3 2 2 0.01 0.85 1.0 0.3 349 385 390 426 376 430 0.79 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 Pyr_redox_2 PF07992.9 201 5.9e-43 139.7 0.0 1 1 1.6e-44 1.3e-42 138.6 0.0 1 199 100 407 100 409 0.96 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_7 - 492 DNA_methylase PF00145.12 335 1.9e-79 259.8 0.0 1 1 4.9e-81 4.1e-79 258.7 0.0 1 331 110 471 110 474 0.86 # 4699 # 6174 # -1 # ID=5_7;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.479 4_11 - 562 Trp_halogenase PF04820.9 454 0.0038 8.5 3.3 1 1 8.1e-05 0.0068 7.6 3.3 1 47 100 143 100 151 0.76 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_15 - 237 AAA_15 PF13175.1 415 4.6e-09 28.4 0.0 1 1 7.2e-11 6.1e-09 28.0 0.0 2 46 5 48 4 67 0.90 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_11 - 562 NAD_binding_7 PF13241.1 103 3.2e-06 20.0 1.2 1 2 1.9e-05 0.0016 11.4 0.2 9 38 100 129 96 164 0.90 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 NAD_binding_7 PF13241.1 103 3.2e-06 20.0 1.2 2 2 0.00049 0.041 6.9 0.1 8 45 271 314 264 382 0.66 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_15 - 237 AAA_21 PF13304.1 303 1.1e-05 18.2 0.0 1 1 2.3e-07 1.9e-05 17.3 0.0 2 24 27 49 27 83 0.83 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_11 - 562 NAD_binding_8 PF13450.1 68 5.8e-05 15.8 1.2 1 1 6.9e-07 5.8e-05 15.8 1.2 1 35 103 136 103 155 0.91 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_15 - 237 SMC_N PF02463.14 220 2.2e-10 32.7 0.0 1 1 3.9e-12 3.2e-10 32.2 0.0 2 71 4 69 3 79 0.85 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_15 - 237 AAA_23 PF13476.1 202 1.3e-11 37.8 0.0 1 1 1.6e-13 1.3e-11 37.8 0.0 1 53 6 58 6 202 0.88 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_6 - 402 CbiA PF01656.18 195 1.3e-18 59.8 0.0 1 1 2.8e-20 2.4e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 4657 # 5862 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 4_11 - 562 HI0933_like PF03486.9 409 3.6e-09 28.1 5.0 1 2 8.5e-07 3.6e-05 15.0 2.8 2 33 100 131 99 139 0.91 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 HI0933_like PF03486.9 409 3.6e-09 28.1 5.0 2 2 3.4e-06 0.00014 13.0 0.0 83 163 286 362 281 379 0.85 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_12 - 85 HI0933_like PF03486.9 409 0.00071 10.7 0.0 1 1 1.8e-05 0.00075 10.6 0.0 75 126 5 57 1 65 0.86 # 7413 # 7667 # 1 # ID=3_12;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.467 1_2 - 129 Ribosomal_S20p PF01649.13 84 0.00024 14.2 0.1 1 1 4.9e-06 0.00041 13.4 0.1 6 47 56 97 53 115 0.77 # 860 # 1246 # 1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 2_15 - 237 AAA_29 PF13555.1 62 4.6e-08 25.2 0.0 1 1 9.2e-10 7.7e-08 24.5 0.0 2 49 5 50 4 57 0.82 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_11 - 562 FAD_binding_2 PF00890.19 417 8e-07 20.8 5.3 1 3 9.5e-09 8e-07 20.8 5.3 2 32 101 131 100 138 0.91 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 FAD_binding_2 PF00890.19 417 8e-07 20.8 5.3 2 3 0.034 2.9 -0.8 0.2 142 204 311 366 286 382 0.67 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 FAD_binding_2 PF00890.19 417 8e-07 20.8 5.3 3 3 0.0019 0.16 3.4 0.1 373 402 374 405 368 419 0.86 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 Thi4 PF01946.12 230 0.00023 13.0 0.4 1 1 6.3e-06 0.00053 11.7 0.4 19 70 100 150 95 158 0.88 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 60.5 0.1 1 3 1.5e-06 0.00012 14.8 0.0 164 199 95 130 48 134 0.85 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 60.5 0.1 2 3 5.8e-09 4.9e-07 22.6 0.0 115 201 219 304 174 306 0.81 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 Pyr_redox_3 PF13738.1 203 1.2e-18 60.5 0.1 3 3 5.6e-08 4.7e-06 19.4 0.0 89 147 317 372 309 431 0.82 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_8 - 722 N6_Mtase PF02384.11 311 1.7e-54 177.6 0.0 1 1 2.8e-56 2.4e-54 177.1 0.0 3 276 177 489 175 508 0.84 # 7936 # 10101 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 2_6 - 402 AAA_31 PF13614.1 157 8e-05 15.3 0.0 1 1 5.5e-06 0.00046 12.8 0.0 108 147 235 273 230 279 0.86 # 4657 # 5862 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.456 1_8 - 722 Methyltransf_26 PF13659.1 117 7.4e-11 34.8 0.0 1 1 2e-12 1.6e-10 33.7 0.0 5 86 232 327 229 390 0.77 # 7936 # 10101 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 4_11 - 562 XdhC_C PF13478.1 136 0.0007 12.6 1.0 1 2 0.08 6.7 -0.3 0.1 1 29 101 129 101 163 0.86 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 XdhC_C PF13478.1 136 0.0007 12.6 1.0 2 2 6.9e-05 0.0058 9.6 0.1 1 66 273 351 273 371 0.64 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_15 - 237 DUF2813 PF11398.3 373 5.2e-05 15.0 0.3 1 2 2e-06 0.00016 13.4 0.0 11 49 12 51 3 56 0.79 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_15 - 237 DUF2813 PF11398.3 373 5.2e-05 15.0 0.3 2 2 0.041 3.5 -0.8 0.1 94 148 126 180 118 226 0.52 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 2_15 - 237 ABC_tran PF00005.22 137 7.7e-05 15.7 0.0 1 1 1.4e-06 0.00012 15.1 0.0 15 113 28 155 18 173 0.74 # 12021 # 12731 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.534 4_11 - 562 K_oxygenase PF13434.1 341 2.8e-06 19.0 0.2 1 3 0.0041 0.34 2.3 0.2 187 223 95 129 86 132 0.74 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 K_oxygenase PF13434.1 341 2.8e-06 19.0 0.2 2 3 2.9e-06 0.00024 12.7 0.0 130 231 217 309 200 339 0.79 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 K_oxygenase PF13434.1 341 2.8e-06 19.0 0.2 3 3 0.022 1.8 -0.0 0.0 139 160 345 366 314 376 0.63 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_8 - 722 Cons_hypoth95 PF03602.10 183 0.00024 13.2 0.0 1 2 1.2e-05 0.001 11.1 0.0 72 152 268 347 263 360 0.82 # 7936 # 10101 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_8 - 722 Cons_hypoth95 PF03602.10 183 0.00024 13.2 0.0 2 2 0.096 8.1 -1.6 0.0 132 158 595 621 587 629 0.81 # 7936 # 10101 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_8 - 722 Eco57I PF07669.6 106 2.2e-05 17.5 0.0 1 1 5e-06 0.00042 13.4 0.0 2 103 311 441 310 444 0.77 # 7936 # 10101 # 1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 4_11 - 562 FAD_oxidored PF12831.2 428 5e-07 21.7 3.8 1 2 5.9e-09 5e-07 21.7 3.8 1 41 100 139 100 159 0.83 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 FAD_oxidored PF12831.2 428 5e-07 21.7 3.8 2 2 0.01 0.84 1.2 0.0 84 120 305 341 261 364 0.71 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 DAO PF01266.19 358 5.6e-12 37.8 7.5 1 2 1.9e-08 1.6e-06 19.9 1.5 2 35 101 134 100 161 0.85 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 DAO PF01266.19 358 5.6e-12 37.8 7.5 2 2 7.7e-09 6.4e-07 21.1 0.5 151 239 314 400 274 529 0.80 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 Pyr_redox PF00070.22 80 8e-20 63.8 5.4 1 2 1.2e-06 0.0001 15.4 1.5 2 31 101 130 100 132 0.95 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 Pyr_redox PF00070.22 80 8e-20 63.8 5.4 2 2 3.2e-17 2.7e-15 49.3 0.1 1 72 272 342 272 351 0.91 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 AlaDh_PNT_C PF01262.16 168 7.2e-07 21.6 2.3 1 2 3.9e-06 0.00033 12.9 0.3 16 50 94 128 80 131 0.87 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_11 - 562 AlaDh_PNT_C PF01262.16 168 7.2e-07 21.6 2.3 2 2 0.00012 0.0097 8.1 0.1 19 60 269 310 260 341 0.84 # 4575 # 6260 # 1 # ID=4_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/e286af51-1c61-4705-8fba-de2ab6682eaf # Target file: checkm_output/bins/pm995/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm995/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/e286af51-1c61-4705-8fba-de2ab6682eaf checkm_output/bins/pm995/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:57 2020 # [ok]