# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_73 - 213 cobW PF02492.14 178 0.0006 12.5 0.1 1 1 8.4e-06 0.001 11.7 0.1 2 38 51 87 50 113 0.76 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_68 - 419 Terminase_6 PF03237.10 384 1.4e-20 66.5 0.0 1 1 2.6e-22 1.6e-20 66.3 0.0 4 382 31 403 28 405 0.89 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 258 Terminase_6 PF03237.10 384 1.5e-05 17.1 0.0 1 2 0.00054 0.033 6.1 0.0 88 110 17 39 11 41 0.87 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 Terminase_6 PF03237.10 384 1.5e-05 17.1 0.0 2 2 7.1e-05 0.0043 9.0 0.0 6 64 78 135 76 198 0.68 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_10 - 359 IstB_IS21 PF01695.12 178 0.0002 14.0 0.0 1 1 7e-06 0.00043 12.9 0.0 52 81 56 85 51 100 0.83 # 4821 # 5897 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_28 - 258 IstB_IS21 PF01695.12 178 0.0005 12.7 0.3 1 1 5.2e-05 0.0032 10.1 0.2 53 70 75 92 58 99 0.88 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_42 - 222 MipZ PF09140.6 261 6e-18 58.0 0.3 1 1 3.6e-18 4.5e-16 51.8 0.3 2 150 4 133 3 145 0.84 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_42 - 222 Methyltransf_18 PF12847.2 112 4.2e-05 17.3 0.0 1 1 6.4e-07 7.9e-05 16.5 0.0 22 78 31 89 21 157 0.81 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_28 - 258 DEAD_2 PF06733.10 174 0.00091 11.8 0.0 1 1 1.2e-05 0.0014 11.2 0.0 143 165 169 191 147 199 0.80 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 AAA_22 PF13401.1 131 2.4e-08 27.4 0.0 1 2 0.011 0.68 3.3 0.0 71 97 4 36 2 47 0.86 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 AAA_22 PF13401.1 131 2.4e-08 27.4 0.0 2 2 1.6e-07 9.9e-06 18.9 0.1 5 112 70 195 66 212 0.68 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 AAA_22 PF13401.1 131 2.9e-07 23.9 0.0 1 1 1.5e-08 9.2e-07 22.3 0.0 3 86 48 176 44 193 0.74 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 PRK PF00485.13 194 4.2e-05 16.3 0.0 1 1 6.3e-07 7.7e-05 15.5 0.0 1 39 51 88 51 106 0.77 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_42 - 222 SRP54 PF00448.17 196 0.0018 10.9 1.4 1 1 4.1e-05 0.005 9.5 1.4 3 44 4 47 2 106 0.64 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_73 - 213 KAP_NTPase PF07693.9 325 4.7e-07 22.2 0.0 1 1 4.6e-09 5.6e-07 22.0 0.0 17 115 46 142 37 202 0.68 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 AAA_15 PF13175.1 415 9.4e-05 14.7 0.0 1 1 9.1e-07 0.00011 14.5 0.0 14 56 41 97 9 142 0.77 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 AAA_17 PF13207.1 121 5.4e-07 23.7 0.0 1 1 1.6e-08 9.6e-07 22.9 0.0 1 33 51 86 51 176 0.81 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_42 - 222 AAA_17 PF13207.1 121 0.00045 14.3 0.3 1 1 1.2e-05 0.00075 13.5 0.2 2 89 5 103 3 195 0.69 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_118 - 639 AAA_21 PF13304.1 303 3.1e-05 17.2 0.0 1 2 0.00046 0.057 6.5 0.0 8 22 42 56 41 97 0.88 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_118 - 639 AAA_21 PF13304.1 303 3.1e-05 17.2 0.0 2 2 0.00011 0.013 8.6 0.0 204 297 539 615 439 616 0.82 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_73 - 213 MobB PF03205.9 140 3.7e-06 19.9 0.0 1 1 7.1e-08 8.7e-06 18.7 0.0 2 38 51 87 50 103 0.88 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_76 - 520 Helicase_C PF00271.26 78 2.3e-14 46.3 0.0 1 1 5.8e-16 7.2e-14 44.7 0.0 2 78 387 463 386 463 0.97 # 69137 # 70696 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_42 - 222 ArsA_ATPase PF02374.10 305 0.00077 11.7 3.8 1 2 1.6e-05 0.0019 10.4 1.5 1 33 2 35 2 41 0.85 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_42 - 222 ArsA_ATPase PF02374.10 305 0.00077 11.7 3.8 2 2 0.0097 1.2 1.2 0.0 116 134 69 89 57 91 0.83 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_28 - 258 PhoH PF02562.11 205 1.1e-77 253.1 0.0 1 1 2.1e-79 1.3e-77 252.8 0.0 2 205 52 257 51 257 0.98 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_68 - 419 PhoH PF02562.11 205 0.00037 12.9 0.0 1 2 5.5e-05 0.0034 9.8 0.0 31 138 36 136 12 146 0.65 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_68 - 419 PhoH PF02562.11 205 0.00037 12.9 0.0 2 2 0.078 4.8 -0.5 0.0 65 106 351 392 340 396 0.78 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_73 - 213 T2SE PF00437.15 272 0.00019 13.6 0.1 1 1 2.7e-06 0.00033 12.8 0.1 116 164 37 85 4 112 0.78 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 Zeta_toxin PF06414.7 201 1.1e-05 17.8 0.0 1 2 2.8e-07 3.4e-05 16.2 0.0 14 52 47 85 37 98 0.81 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 Zeta_toxin PF06414.7 201 1.1e-05 17.8 0.0 2 2 0.066 8.1 -1.4 0.0 171 185 156 170 125 199 0.59 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_24 - 203 CMS1 PF14617.1 252 1.9e-05 17.0 0.0 1 1 1.9e-07 2.3e-05 16.7 0.0 130 200 66 133 6 145 0.72 # 20338 # 20946 # -1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.470 1_118 - 639 SMC_N PF02463.14 220 4.5e-15 48.6 0.4 1 1 1.3e-16 7.8e-15 47.8 0.4 32 200 41 618 3 635 0.91 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_73 - 213 SMC_N PF02463.14 220 4.2e-05 16.0 0.7 1 2 0.00081 0.05 6.0 0.1 25 41 50 66 37 73 0.81 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 SMC_N PF02463.14 220 4.2e-05 16.0 0.7 2 2 0.00013 0.0082 8.5 0.1 136 204 126 192 70 208 0.68 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_42 - 222 VirC1 PF07015.6 231 2.4e-09 29.8 0.0 1 1 2.8e-11 3.5e-09 29.2 0.0 2 189 3 189 2 204 0.80 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_28 - 258 Arch_ATPase PF01637.13 234 6.4e-05 15.9 0.0 1 1 1.8e-06 0.00011 15.1 0.0 15 131 64 184 60 204 0.74 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 Arch_ATPase PF01637.13 234 0.00021 14.2 0.0 1 1 4.2e-06 0.00026 13.9 0.0 18 68 47 97 41 180 0.82 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 AAA_16 PF13191.1 185 2.4e-08 27.3 0.0 1 1 5.8e-10 3.6e-08 26.8 0.0 13 84 39 104 30 175 0.78 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_28 - 258 AAA_16 PF13191.1 185 0.00013 15.2 0.0 1 1 7.1e-06 0.00044 13.5 0.0 23 82 68 141 53 202 0.78 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_118 - 639 AAA_23 PF13476.1 202 8.5e-19 61.8 0.0 1 1 5e-20 6.2e-18 59.0 0.0 1 177 5 251 5 510 0.78 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_73 - 213 AAA_18 PF13238.1 129 1.9e-06 21.4 0.0 1 1 2.9e-08 3.6e-06 20.5 0.0 1 40 52 91 52 106 0.82 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_42 - 222 CbiA PF01656.18 195 3.6e-18 58.8 0.1 1 1 8.3e-20 5.1e-18 58.3 0.1 1 170 5 158 5 186 0.73 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_73 - 213 CbiA PF01656.18 195 0.00054 12.6 0.1 1 1 1.2e-05 0.00077 12.1 0.1 2 48 52 101 51 195 0.72 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_38 - 447 KaiC PF06745.8 227 1.8e-10 33.5 0.7 1 3 0.015 0.95 1.7 0.1 85 176 74 167 43 182 0.63 # 31351 # 32691 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.538 1_38 - 447 KaiC PF06745.8 227 1.8e-10 33.5 0.7 2 3 3.1e-10 1.9e-08 26.9 0.0 2 67 191 256 190 299 0.91 # 31351 # 32691 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.538 1_38 - 447 KaiC PF06745.8 227 1.8e-10 33.5 0.7 3 3 0.015 0.91 1.7 0.1 64 137 341 412 332 435 0.65 # 31351 # 32691 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.538 1_10 - 359 KaiC PF06745.8 227 4.3e-05 15.9 0.0 1 1 1.2e-06 7.5e-05 15.1 0.0 13 46 41 78 20 98 0.76 # 4821 # 5897 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_28 - 258 AAA_14 PF13173.1 128 1.3e-05 18.4 0.0 1 1 9.8e-06 0.00061 12.9 0.0 9 96 76 205 68 218 0.58 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 AAA_14 PF13173.1 128 0.00036 13.6 0.0 1 1 1.6e-05 0.00099 12.2 0.0 2 45 49 91 48 124 0.72 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 AAA_29 PF13555.1 62 1.1e-07 24.6 0.0 1 1 4.3e-09 2.7e-07 23.3 0.0 8 40 35 66 32 70 0.91 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_118 - 639 AAA_29 PF13555.1 62 9.5e-05 15.1 0.1 1 1 9.4e-06 0.00058 12.6 0.0 31 51 41 61 4 66 0.81 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_28 - 258 AAA PF00004.24 132 4.9e-05 16.7 0.3 1 1 3.3e-06 0.00041 13.8 0.2 4 22 75 95 73 205 0.71 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 Sigma54_activat PF00158.21 168 0.0002 14.1 0.1 1 2 1.2e-05 0.0014 11.3 0.0 16 49 43 76 30 92 0.79 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 Sigma54_activat PF00158.21 168 0.0002 14.1 0.1 2 2 0.026 3.2 0.4 0.1 131 150 174 194 155 208 0.67 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 DUF258 PF03193.11 161 1.4e-05 17.5 0.0 1 1 2e-07 2.4e-05 16.7 0.0 25 85 38 111 14 119 0.77 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_42 - 222 AAA_31 PF13614.1 157 1.6e-09 31.1 0.1 1 2 3.6e-06 0.00044 13.4 0.0 1 36 3 39 3 60 0.84 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_42 - 222 AAA_31 PF13614.1 157 1.6e-09 31.1 0.1 2 2 7.8e-07 9.6e-05 15.5 0.0 105 151 69 114 54 120 0.76 # 34938 # 35603 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.497 1_73 - 213 NTPase_1 PF03266.10 168 4.3e-05 16.5 0.1 1 2 2.4e-06 0.00029 13.8 0.0 2 31 52 81 51 103 0.95 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 NTPase_1 PF03266.10 168 4.3e-05 16.5 0.1 2 2 0.038 4.7 0.1 0.0 94 136 143 189 124 210 0.55 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 AAA_33 PF13671.1 143 0.0004 13.5 0.1 1 1 5.4e-06 0.00066 12.8 0.1 1 33 51 94 51 208 0.69 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 KTI12 PF08433.5 270 7.3e-07 21.8 0.1 1 2 1.4e-07 1.7e-05 17.3 0.0 4 40 52 88 50 104 0.89 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 KTI12 PF08433.5 270 7.3e-07 21.8 0.1 2 2 0.0043 0.53 2.6 0.0 187 218 149 180 136 209 0.65 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_38 - 447 DnaB_C PF03796.10 259 1.6e-11 36.7 0.0 1 1 2e-13 2.5e-11 36.1 0.0 2 251 190 433 189 441 0.76 # 31351 # 32691 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.538 1_28 - 258 AAA_30 PF13604.1 196 4.3e-08 26.1 1.0 1 1 7e-09 4.3e-07 22.9 1.0 8 133 61 210 55 219 0.82 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 AAA_30 PF13604.1 196 5.5e-05 16.0 0.7 1 1 3.8e-06 0.00024 13.9 0.7 17 50 48 81 42 190 0.84 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 FtsK_SpoIIIE PF01580.13 205 0.00025 13.8 0.0 1 2 7e-06 0.00087 12.0 0.0 18 58 28 69 16 73 0.81 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 FtsK_SpoIIIE PF01580.13 205 0.00025 13.8 0.0 2 2 0.055 6.8 -0.7 0.0 175 200 159 184 89 197 0.71 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_10 - 359 RecA PF00154.16 323 8.2e-48 156.2 0.0 1 1 1.3e-49 1.5e-47 155.3 0.0 22 282 16 307 9 331 0.81 # 4821 # 5897 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_73 - 213 ABC_tran PF00005.22 137 1.4e-14 47.7 0.1 1 2 5.3e-10 3.3e-08 27.1 0.0 1 38 39 76 39 98 0.87 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 ABC_tran PF00005.22 137 1.4e-14 47.7 0.1 2 2 1.9e-07 1.2e-05 18.9 0.0 79 134 97 152 78 155 0.74 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_118 - 639 ABC_tran PF00005.22 137 2.1e-07 24.5 2.6 1 2 0.00035 0.021 8.3 0.1 19 32 41 54 40 78 0.87 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_118 - 639 ABC_tran PF00005.22 137 2.1e-07 24.5 2.6 2 2 3e-06 0.00019 15.0 0.3 79 126 482 565 252 569 0.81 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_73 - 213 ATP-synt_ab PF00006.20 215 0.00074 12.2 0.1 1 1 8.9e-06 0.0011 11.7 0.1 13 48 47 82 42 192 0.71 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 DUF2791 PF10923.3 417 0.00019 13.3 0.1 1 1 2.7e-06 0.00033 12.5 0.0 26 84 27 84 23 113 0.83 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_28 - 258 AAA_19 PF13245.1 76 0.00013 15.0 0.7 1 1 3.4e-06 0.00021 14.3 0.1 14 42 74 100 62 115 0.75 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_68 - 419 AAA_19 PF13245.1 76 0.0009 12.2 0.0 1 1 3e-05 0.0018 11.2 0.0 22 58 36 70 20 94 0.79 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_73 - 213 AAA_10 PF12846.2 304 3.1e-06 20.0 0.4 1 2 3.6e-06 0.00015 14.4 0.0 6 38 54 87 51 105 0.81 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 AAA_10 PF12846.2 304 3.1e-06 20.0 0.4 2 2 0.0056 0.23 4.0 0.1 216 260 140 184 95 192 0.78 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_28 - 258 AAA_10 PF12846.2 304 0.00072 12.2 0.0 1 2 0.0056 0.23 4.0 0.0 2 26 70 94 69 105 0.82 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 AAA_10 PF12846.2 304 0.00072 12.2 0.0 2 2 0.0017 0.072 5.6 0.0 218 245 169 195 159 199 0.83 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_118 - 639 AAA_10 PF12846.2 304 0.018 7.6 7.0 1 2 0.00099 0.041 6.4 0.3 9 24 41 56 39 95 0.73 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_118 - 639 AAA_10 PF12846.2 304 0.018 7.6 7.0 2 2 0.0046 0.19 4.2 0.6 97 262 465 617 349 629 0.78 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_118 - 639 SbcCD_C PF13558.1 90 1.3e-07 24.7 0.1 1 1 2.6e-09 3.1e-07 23.5 0.1 12 89 532 601 524 602 0.86 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_76 - 520 ResIII PF04851.10 184 8.2e-18 58.1 0.0 1 1 1.2e-19 1.5e-17 57.2 0.0 26 183 112 268 96 269 0.82 # 69137 # 70696 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_28 - 258 Zot PF05707.7 193 1e-05 18.3 0.0 1 1 1.3e-07 1.7e-05 17.6 0.0 2 95 71 187 70 209 0.75 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 Viral_helicase1 PF01443.13 234 2.8e-05 16.9 0.0 1 2 0.00094 0.12 5.1 0.0 4 21 75 92 72 119 0.78 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 Viral_helicase1 PF01443.13 234 2.8e-05 16.9 0.0 2 2 5.3e-05 0.0065 9.2 0.0 62 107 171 217 155 243 0.86 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 DUF2075 PF09848.4 352 6e-05 15.3 0.0 1 1 1.6e-06 9.8e-05 14.6 0.0 3 101 71 189 69 206 0.72 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 DUF2075 PF09848.4 352 8.3e-05 14.8 0.2 1 1 3.4e-06 0.00021 13.5 0.0 3 28 51 76 49 107 0.81 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_76 - 520 DEAD PF00270.24 169 1.1e-13 44.2 0.1 1 2 2.4e-13 9.8e-12 37.9 0.0 2 163 99 268 98 275 0.71 # 69137 # 70696 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_76 - 520 DEAD PF00270.24 169 1.1e-13 44.2 0.1 2 2 0.01 0.41 3.3 0.0 64 102 384 425 376 428 0.76 # 69137 # 70696 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_68 - 419 DEAD PF00270.24 169 0.00026 13.7 0.0 1 1 2.2e-05 0.00092 11.9 0.0 25 132 35 130 14 154 0.76 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_28 - 258 DEAD PF00270.24 169 0.00076 12.2 0.0 1 2 0.00032 0.013 8.2 0.0 17 52 72 107 56 116 0.80 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 DEAD PF00270.24 169 0.00076 12.2 0.0 2 2 0.03 1.2 1.8 0.0 120 136 172 188 159 206 0.72 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 DUF815 PF05673.8 250 1.3e-05 17.4 0.0 1 1 1.7e-07 2.1e-05 16.7 0.0 32 104 30 100 8 106 0.83 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 Sigma54_activ_2 PF14532.1 138 2.5e-05 17.5 0.0 1 1 3.3e-07 4.1e-05 16.9 0.0 10 95 38 143 33 193 0.70 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_68 - 419 Terminase_3 PF04466.8 387 9.3e-08 24.6 0.0 1 2 2.1e-09 2.5e-07 23.2 0.0 2 123 24 143 23 161 0.91 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_68 - 419 Terminase_3 PF04466.8 387 9.3e-08 24.6 0.0 2 2 0.08 9.9 -1.8 0.0 343 385 363 402 340 404 0.64 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_73 - 213 ArgK PF03308.11 267 1.9e-05 16.7 0.0 1 1 2.7e-07 3.3e-05 15.9 0.0 26 63 46 83 15 85 0.86 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 PIF1 PF05970.9 364 4.9e-05 15.5 0.0 1 1 6.3e-07 7.8e-05 14.9 0.0 18 55 45 82 31 85 0.86 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 RNA_helicase PF00910.17 107 0.0001 15.7 0.1 1 1 9.1e-06 0.00056 13.3 0.1 1 26 52 77 52 120 0.81 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_28 - 258 RNA_helicase PF00910.17 107 0.0011 12.4 0.0 1 2 0.00039 0.024 8.0 0.0 4 23 75 94 72 111 0.73 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_28 - 258 RNA_helicase PF00910.17 107 0.0011 12.4 0.0 2 2 0.03 1.8 2.0 0.0 49 85 171 204 161 209 0.68 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_73 - 213 UPF0079 PF02367.12 123 4.7e-06 19.5 0.0 1 1 7.5e-08 9.2e-06 18.5 0.0 9 47 43 82 36 93 0.87 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_68 - 419 Terminase_GpA PF05876.7 557 3.3e-05 15.5 0.0 1 1 4.5e-07 5.5e-05 14.8 0.0 34 149 25 132 10 136 0.78 # 63556 # 64812 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.543 1_73 - 213 NACHT PF05729.7 166 4.3e-05 16.4 0.0 1 1 1.6e-06 9.5e-05 15.3 0.0 2 31 51 80 50 111 0.82 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_28 - 258 NACHT PF05729.7 166 0.00098 12.0 0.0 1 1 3.4e-05 0.0021 10.9 0.0 6 22 75 91 71 100 0.86 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_38 - 447 AAA_25 PF13481.1 194 2.6e-13 43.0 0.1 1 1 5e-14 1.2e-12 40.8 0.0 14 193 189 372 175 373 0.78 # 31351 # 32691 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.538 1_10 - 359 AAA_25 PF13481.1 194 4.9e-07 22.5 0.0 1 1 9.3e-08 2.3e-06 20.3 0.0 13 157 27 157 18 216 0.68 # 4821 # 5897 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_118 - 639 AAA_25 PF13481.1 194 5.6e-05 15.8 0.5 1 1 1.6e-05 0.00039 13.1 0.0 39 139 39 137 29 143 0.71 # 102503 # 104419 # -1 # ID=1_118;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.531 1_73 - 213 AAA_25 PF13481.1 194 0.00024 13.7 0.1 1 2 0.00013 0.0032 10.0 0.0 19 50 31 66 15 89 0.76 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_73 - 213 AAA_25 PF13481.1 194 0.00024 13.7 0.1 2 2 0.058 1.4 1.4 0.1 165 185 162 182 144 186 0.80 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 1_28 - 258 AAA_25 PF13481.1 194 0.00031 13.4 0.4 1 1 5.8e-05 0.0014 11.2 0.1 34 63 70 99 59 113 0.81 # 21897 # 22670 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.544 1_76 - 520 SNF2_N PF00176.18 299 2.2e-05 16.5 0.0 1 1 2.9e-07 3.6e-05 15.8 0.0 105 182 185 277 168 285 0.82 # 69137 # 70696 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.511 1_10 - 359 Rad51 PF08423.6 256 5.1e-05 15.4 0.0 1 2 5.7e-06 0.0007 11.7 0.0 32 84 45 91 27 135 0.86 # 4821 # 5897 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_10 - 359 Rad51 PF08423.6 256 5.1e-05 15.4 0.0 2 2 0.0078 0.95 1.4 0.0 169 207 195 230 161 262 0.78 # 4821 # 5897 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.550 1_18 - 412 AAA_5 PF07728.9 139 1.6e-17 56.8 0.0 1 1 2.2e-19 2.7e-17 56.0 0.0 4 126 173 293 172 309 0.92 # 13970 # 15205 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_73 - 213 APS_kinase PF01583.15 157 4.4e-07 22.9 0.0 1 1 7e-09 8.6e-07 21.9 0.0 1 38 48 85 48 104 0.88 # 67071 # 67709 # -1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.552 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/36a99b9f-2abe-46a9-87a7-a9a3dd3deca6 # Target file: checkm_output/bins/pm991/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm991/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/36a99b9f-2abe-46a9-87a7-a9a3dd3deca6 checkm_output/bins/pm991/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:55 2020 # [ok]