# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_23 - 234 UPF0020 PF01170.13 180 3.3e-06 19.6 0.0 1 2 5.1e-05 0.0048 9.3 0.0 103 120 17 34 5 80 0.83 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_23 - 234 UPF0020 PF01170.13 180 3.3e-06 19.6 0.0 2 2 9.4e-05 0.0089 8.4 0.0 28 51 170 193 165 227 0.75 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_21 - 260 IstB_IS21 PF01695.12 178 8.2e-66 213.6 0.0 1 1 2.2e-67 2.1e-65 212.3 0.0 2 177 56 233 55 234 0.96 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_24 - 209 MipZ PF09140.6 261 1.6e-21 69.3 0.5 1 2 1.2e-12 1.1e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 MipZ PF09140.6 261 1.6e-21 69.3 0.5 2 2 1.6e-12 1.5e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 1 2 1.8e-06 0.00017 13.8 0.3 4 38 3 37 1 50 0.89 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 2 2 0.029 2.8 0.0 0.0 108 144 69 103 44 113 0.78 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_11 - 565 3HCDH_N PF02737.13 180 0.003 10.0 6.4 1 2 0.0047 0.45 2.9 2.4 1 30 99 128 99 134 0.93 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 3HCDH_N PF02737.13 180 0.003 10.0 6.4 2 2 9e-05 0.0086 8.6 0.1 2 39 272 309 271 348 0.73 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 GIDA PF01134.17 392 2.4e-08 26.0 6.6 1 3 3.5e-10 3.3e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 GIDA PF01134.17 392 2.4e-08 26.0 6.6 2 3 0.038 3.6 -0.9 0.0 3 31 273 301 271 315 0.84 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 GIDA PF01134.17 392 2.4e-08 26.0 6.6 3 3 0.018 1.7 0.1 0.1 349 385 393 429 387 433 0.77 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_14 - 181 SSB PF00436.20 104 3.8e-42 135.3 0.3 1 1 5.1e-44 4.9e-42 134.9 0.3 1 99 6 105 6 113 0.97 # 8937 # 9479 # -1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.621 3_11 - 565 Pyr_redox_2 PF07992.9 201 7.5e-44 142.8 0.0 1 1 3.2e-45 3.1e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 260 AAA_22 PF13401.1 131 1.2e-06 21.6 0.0 1 2 4.1e-06 0.00039 13.4 0.1 4 28 101 125 98 148 0.75 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_22 PF13401.1 131 1.2e-06 21.6 0.0 2 2 0.00082 0.078 6.0 0.0 77 101 151 178 124 201 0.64 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_11 - 565 DFP PF04127.10 185 0.00074 12.0 2.4 1 2 0.00039 0.037 6.4 0.4 28 51 105 128 99 156 0.83 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 DFP PF04127.10 185 0.00074 12.0 2.4 2 2 0.0014 0.13 4.7 0.1 32 53 281 302 276 336 0.77 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_13 - 478 DNA_methylase PF00145.12 335 2.1e-79 259.8 0.0 1 1 4.4e-81 4.2e-79 258.8 0.0 1 331 96 457 96 460 0.86 # 11773 # 13206 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.480 3_24 - 209 SRP54 PF00448.17 196 2.4e-07 23.2 0.1 1 1 1.5e-08 1.4e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_14 - 237 AAA_15 PF13175.1 415 5.2e-09 28.4 0.0 1 1 7.2e-11 6.9e-09 28.0 0.0 2 46 5 48 4 67 0.90 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 3_11 - 565 NAD_binding_7 PF13241.1 103 3.2e-07 23.4 1.2 1 2 5.4e-05 0.0051 9.9 0.2 9 38 99 128 96 184 0.89 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 NAD_binding_7 PF13241.1 103 3.2e-07 23.4 1.2 2 2 1.4e-05 0.0013 11.8 0.1 8 41 270 306 264 380 0.74 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_23 - 234 N6_N4_Mtase PF01555.13 231 1.1e-32 106.2 0.0 1 2 6.8e-13 6.4e-11 34.9 0.0 1 113 21 130 21 137 0.85 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_23 - 234 N6_N4_Mtase PF01555.13 231 1.1e-32 106.2 0.0 2 2 2e-23 1.9e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_24 - 209 AAA_17 PF13207.1 121 2.1e-05 18.2 0.0 1 1 8.5e-07 4e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_21 - 260 AAA_17 PF13207.1 121 0.00037 14.2 0.0 1 1 1.3e-05 0.00062 13.4 0.0 2 26 104 131 103 216 0.74 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_14 - 237 AAA_21 PF13304.1 303 1.2e-05 18.2 0.0 1 1 2.3e-07 2.2e-05 17.3 0.0 2 24 27 49 27 83 0.83 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 3_24 - 209 MobB PF03205.9 140 5.6e-05 15.7 0.1 1 1 1.6e-06 0.00015 14.3 0.0 10 42 11 41 1 46 0.79 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 ArsA_ATPase PF02374.10 305 3e-08 25.8 0.4 1 2 1.2e-09 1.1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 ArsA_ATPase PF02374.10 305 3e-08 25.8 0.4 2 2 0.053 5.1 -1.2 0.0 121 135 69 85 47 86 0.75 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_21 - 260 PhoH PF02562.11 205 3e-07 22.7 0.1 1 1 5e-09 4.7e-07 22.0 0.1 14 56 96 138 84 163 0.80 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AFG1_ATPase PF03969.11 362 0.00029 12.5 0.0 1 1 5.8e-06 0.00055 11.6 0.0 64 214 103 251 81 258 0.78 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_11 - 565 NAD_binding_8 PF13450.1 68 3.3e-05 16.7 1.2 1 2 3.5e-07 3.3e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 NAD_binding_8 PF13450.1 68 3.3e-05 16.7 1.2 2 2 0.041 3.9 0.5 0.2 1 25 274 298 274 303 0.81 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 F420_oxidored PF03807.12 96 0.0067 9.7 4.1 1 2 0.0023 0.22 4.9 1.2 2 31 100 126 99 131 0.87 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 F420_oxidored PF03807.12 96 0.0067 9.7 4.1 2 2 0.0075 0.71 3.3 0.1 1 34 271 300 271 323 0.87 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_14 - 237 SMC_N PF02463.14 220 2.5e-10 32.7 0.0 1 1 3.9e-12 3.7e-10 32.2 0.0 2 71 4 69 3 79 0.85 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 3_24 - 209 VirC1 PF07015.6 231 2.6e-09 29.3 0.0 1 1 5.9e-11 5.6e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 Fer4_NifH PF00142.13 273 7.1e-05 14.9 0.0 1 1 2.3e-06 0.00022 13.3 0.0 8 38 9 39 2 46 0.89 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_21 - 260 AAA_16 PF13191.1 185 1.4e-05 18.0 2.4 1 3 1.2e-06 0.00011 15.0 0.1 23 51 100 128 86 149 0.80 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_16 PF13191.1 185 1.4e-05 18.0 2.4 2 3 0.035 3.4 0.4 0.0 124 162 143 175 125 192 0.74 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_16 PF13191.1 185 1.4e-05 18.0 2.4 3 3 0.072 6.9 -0.6 0.0 38 62 217 242 207 252 0.75 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_14 - 237 AAA_23 PF13476.1 202 1.5e-11 37.8 0.0 1 1 1.6e-13 1.5e-11 37.8 0.0 1 53 6 58 6 202 0.88 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 3_24 - 209 CbiA PF01656.18 195 2.3e-22 72.2 0.0 1 1 9.5e-24 4.5e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_21 - 260 CbiA PF01656.18 195 0.00092 11.5 0.0 1 1 2.5e-05 0.0012 11.1 0.0 3 42 105 145 104 254 0.75 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_14 PF13173.1 128 3.4e-07 23.1 0.0 1 2 1.7e-08 1.6e-06 20.9 0.0 3 97 102 203 100 219 0.64 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_14 PF13173.1 128 3.4e-07 23.1 0.0 2 2 0.048 4.6 0.0 0.0 14 46 215 247 212 257 0.80 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_11 - 565 HI0933_like PF03486.9 409 2.1e-08 25.8 3.7 1 2 1.2e-06 0.00011 13.5 2.5 2 33 99 130 98 138 0.91 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 HI0933_like PF03486.9 409 2.1e-08 25.8 3.7 2 2 7.2e-06 0.00068 10.9 0.0 82 164 284 366 276 385 0.83 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_2 - 129 Ribosomal_S20p PF01649.13 84 0.00027 14.2 0.1 1 1 4.9e-06 0.00047 13.4 0.1 6 47 56 97 53 115 0.77 # 859 # 1245 # 1 # ID=4_2;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 3_14 - 237 AAA_29 PF13555.1 62 5.2e-08 25.2 0.0 1 1 9.2e-10 8.7e-08 24.5 0.0 2 49 5 50 4 57 0.82 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 3_11 - 565 FAD_binding_2 PF00890.19 417 4.1e-06 18.6 4.7 1 3 4.3e-08 4.1e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 FAD_binding_2 PF00890.19 417 4.1e-06 18.6 4.7 2 3 0.034 3.3 -0.8 0.1 143 204 311 369 297 388 0.72 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 FAD_binding_2 PF00890.19 417 4.1e-06 18.6 4.7 3 3 0.074 7 -1.9 0.0 376 402 388 408 377 424 0.82 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 260 AAA PF00004.24 132 2e-08 27.3 0.0 1 1 4.1e-10 3.9e-08 26.4 0.0 1 70 104 175 104 207 0.82 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 Bac_DnaA PF00308.13 219 4.9e-09 28.9 0.0 1 1 7.8e-11 7.4e-09 28.4 0.0 36 136 103 201 90 209 0.84 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_11 - 565 Pyr_redox_3 PF13738.1 203 1.2e-17 57.4 0.1 1 2 4.4e-14 4.2e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 Pyr_redox_3 PF13738.1 203 1.2e-17 57.4 0.1 2 2 9e-07 8.6e-05 15.5 0.0 93 147 320 375 309 430 0.76 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_2 - 278 N6_Mtase PF02384.11 311 3.1e-12 39.0 0.0 1 1 5.2e-14 5e-12 38.3 0.0 25 117 139 237 130 265 0.85 # 297 # 1130 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 1_21 - 260 DUF258 PF03193.11 161 0.0002 13.4 0.0 1 1 3.7e-06 0.00035 12.6 0.0 26 59 92 125 80 153 0.82 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_24 - 209 AAA_31 PF13614.1 157 4e-06 19.7 0.0 1 2 2.5e-07 2.4e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 AAA_31 PF13614.1 157 4e-06 19.7 0.0 2 2 0.055 5.2 -0.2 0.0 109 127 68 86 62 113 0.68 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_21 - 260 NTPase_1 PF03266.10 168 0.00022 13.8 0.1 1 2 0.0015 0.14 4.6 0.1 2 30 104 132 103 143 0.82 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 NTPase_1 PF03266.10 168 0.00022 13.8 0.1 2 2 0.0003 0.028 6.9 0.0 87 108 155 176 141 202 0.77 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 2_23 - 234 Methyltransf_26 PF13659.1 117 2.5e-11 36.5 0.2 1 2 6.4e-07 3e-05 16.9 0.0 63 113 13 70 3 86 0.72 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_23 - 234 Methyltransf_26 PF13659.1 117 2.5e-11 36.5 0.2 2 2 3.9e-07 1.9e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_2 - 278 Methyltransf_26 PF13659.1 117 5.3e-05 16.1 0.1 1 1 2.8e-06 0.00013 14.8 0.1 3 69 171 242 170 271 0.82 # 297 # 1130 # -1 # ID=2_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.570 3_14 - 237 DUF2813 PF11398.3 373 5.9e-05 15.0 0.3 1 2 2e-06 0.00019 13.4 0.0 11 49 12 51 3 56 0.79 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 3_14 - 237 DUF2813 PF11398.3 373 5.9e-05 15.0 0.3 2 2 0.041 3.9 -0.8 0.1 94 148 126 180 118 226 0.52 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 3_14 - 237 ABC_tran PF00005.22 137 8.7e-05 15.7 0.0 1 1 2.8e-06 0.00014 15.1 0.0 15 113 28 155 18 173 0.74 # 9000 # 9710 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.533 1_21 - 260 ABC_tran PF00005.22 137 0.0005 13.2 0.2 1 1 4.1e-05 0.0019 11.3 0.1 8 31 98 121 95 132 0.86 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_11 - 565 K_oxygenase PF13434.1 341 5.4e-06 18.3 0.0 1 3 0.0039 0.37 2.4 0.0 187 220 94 125 59 130 0.79 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 K_oxygenase PF13434.1 341 5.4e-06 18.3 0.0 2 3 3.3e-06 0.00032 12.5 0.0 132 231 218 308 202 332 0.82 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 K_oxygenase PF13434.1 341 5.4e-06 18.3 0.0 3 3 0.057 5.4 -1.4 0.0 132 160 346 369 314 377 0.67 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_23 - 234 Cons_hypoth95 PF03602.10 183 3.8e-06 19.2 0.0 1 2 0.00016 0.016 7.4 0.0 113 169 19 77 12 86 0.70 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_23 - 234 Cons_hypoth95 PF03602.10 183 3.8e-06 19.2 0.0 2 2 3.1e-05 0.003 9.8 0.0 20 60 149 188 142 225 0.73 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 3_24 - 209 AAA_19 PF13245.1 76 0.00054 12.6 0.1 1 2 0.00019 0.0092 8.6 0.0 20 48 11 35 9 44 0.84 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_24 - 209 AAA_19 PF13245.1 76 0.00054 12.6 0.1 2 2 0.044 2.1 1.1 0.0 42 62 135 155 118 180 0.75 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 1_21 - 260 AAA_19 PF13245.1 76 0.00064 12.3 0.2 1 1 5.3e-05 0.0025 10.5 0.0 11 35 103 126 95 157 0.81 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_10 PF12846.2 304 3.5e-05 16.1 0.2 1 2 0.043 1.4 1.1 0.0 106 155 28 69 4 89 0.61 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_10 PF12846.2 304 3.5e-05 16.1 0.2 2 2 1.3e-05 0.00042 12.6 0.1 3 35 103 135 101 172 0.84 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_24 - 209 AAA_10 PF12846.2 304 0.00015 14.1 0.0 1 1 7.5e-06 0.00024 13.4 0.0 11 39 11 39 3 67 0.90 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 3_20 - 132 AAA_10 PF12846.2 304 0.00073 11.8 0.0 1 2 0.0002 0.0065 8.7 0.0 241 264 12 35 9 45 0.89 # 12917 # 13312 # 1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 3_20 - 132 AAA_10 PF12846.2 304 0.00073 11.8 0.0 2 2 0.04 1.3 1.2 0.0 209 235 104 128 68 130 0.72 # 12917 # 13312 # 1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 3_11 - 565 FAD_oxidored PF12831.2 428 2.8e-06 19.4 3.6 1 1 2.9e-08 2.8e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 DAO PF01266.19 358 4e-09 28.6 11.7 1 3 1.4e-08 1.3e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 DAO PF01266.19 358 4e-09 28.6 11.7 2 3 0.032 3 -0.6 0.1 3 31 273 301 271 307 0.75 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 DAO PF01266.19 358 4e-09 28.6 11.7 3 3 9.4e-07 9e-05 14.3 0.5 152 208 314 372 307 433 0.74 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_20 - 132 Zot PF05707.7 193 0.00025 13.4 0.0 1 1 4.7e-06 0.00045 12.5 0.0 98 127 5 35 1 46 0.82 # 12917 # 13312 # 1 # ID=3_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.548 3_11 - 565 NAD_binding_9 PF13454.1 156 2.7e-05 16.8 2.8 1 3 0.0081 0.77 2.3 0.1 1 41 101 135 101 162 0.81 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 NAD_binding_9 PF13454.1 156 2.7e-05 16.8 2.8 2 3 0.034 3.2 0.3 0.0 134 155 218 241 202 242 0.72 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 NAD_binding_9 PF13454.1 156 2.7e-05 16.8 2.8 3 3 6.6e-06 0.00063 12.4 0.1 112 155 321 366 311 367 0.85 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 Pyr_redox PF00070.22 80 3.4e-20 65.1 6.0 1 2 1.4e-06 0.00014 15.2 1.5 1 31 99 129 99 131 0.96 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 Pyr_redox PF00070.22 80 3.4e-20 65.1 6.0 2 2 6.2e-18 5.9e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 260 Sigma54_activ_2 PF14532.1 138 0.00038 13.4 0.0 1 1 6.3e-06 0.0006 12.7 0.0 9 64 87 144 84 229 0.70 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_11 - 565 AlaDh_PNT_C PF01262.16 168 2.3e-05 16.9 3.1 1 2 0.00051 0.049 6.0 0.8 15 50 92 127 89 130 0.90 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_11 - 565 AlaDh_PNT_C PF01262.16 168 2.3e-05 16.9 3.1 2 2 2.1e-05 0.002 10.5 0.1 16 58 265 307 257 339 0.84 # 5939 # 7633 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_21 - 260 AAA_24 PF13479.1 213 0.0013 11.2 0.1 1 1 3e-05 0.0029 10.0 0.1 5 23 103 121 99 127 0.85 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 NACHT PF05729.7 166 0.00012 14.6 0.0 1 1 2.1e-06 0.0002 13.9 0.0 3 49 104 151 102 200 0.81 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_25 PF13481.1 194 6.8e-07 21.7 0.1 1 1 4.4e-08 2.1e-06 20.1 0.1 9 60 72 128 68 201 0.77 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 3_24 - 209 AAA_25 PF13481.1 194 0.00013 14.3 0.1 1 1 6.2e-06 0.00029 13.1 0.0 42 87 10 44 3 90 0.78 # 16429 # 17055 # -1 # ID=3_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.453 2_23 - 234 Methyltransf_15 PF09445.5 164 0.00071 12.0 0.0 1 2 0.023 2.2 0.6 0.0 53 80 4 30 2 38 0.91 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 2_23 - 234 Methyltransf_15 PF09445.5 164 0.00071 12.0 0.0 2 2 7e-05 0.0066 8.8 0.0 3 30 173 200 171 213 0.90 # 14330 # 15031 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.604 1_21 - 260 AAA_28 PF13521.1 163 0.00024 13.9 0.0 1 1 5e-06 0.00047 13.0 0.0 1 49 103 156 103 171 0.73 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 260 AAA_5 PF07728.9 139 1.7e-05 17.4 0.0 1 1 4.6e-07 4.3e-05 16.1 0.0 1 74 103 172 103 177 0.80 # 21921 # 22700 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.618 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fc168937-3351-4658-b232-cee3d190ace7 # Target file: checkm_output/bins/pm990/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm990/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fc168937-3351-4658-b232-cee3d190ace7 checkm_output/bins/pm990/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:55 2020 # [ok]