# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 73 cobW PF02492.14 178 0.00012 14.7 0.0 1 1 1.2e-06 0.00015 14.5 0.0 4 23 29 48 27 59 0.83 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 FeoB_N PF02421.13 156 0.0014 11.1 0.0 1 1 1.5e-05 0.0018 10.8 0.0 4 35 29 60 27 66 0.91 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_75 - 208 MipZ PF09140.6 261 9.7e-14 44.2 0.9 1 2 1.5e-09 9e-08 24.6 0.1 2 43 2 43 1 64 0.85 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_75 - 208 MipZ PF09140.6 261 9.7e-14 44.2 0.9 2 2 1.8e-07 1.1e-05 17.8 0.1 87 136 65 114 60 155 0.75 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_80 - 389 MipZ PF09140.6 261 1.1e-06 21.1 0.1 1 2 1.7e-07 1e-05 17.9 0.0 2 47 108 153 107 158 0.90 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_80 - 389 MipZ PF09140.6 261 1.1e-06 21.1 0.1 2 2 0.031 1.9 0.6 0.0 88 129 224 265 214 275 0.80 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_75 - 208 YhjQ PF06564.7 244 6.4e-09 28.7 0.2 1 2 1.2e-05 0.0015 11.0 0.2 10 41 9 40 1 44 0.90 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_75 - 208 YhjQ PF06564.7 244 6.4e-09 28.7 0.2 2 2 4.5e-07 5.5e-05 15.8 0.0 111 236 72 205 51 207 0.83 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_35 - 1769 UvrD_C_2 PF13538.1 104 9.6e-09 28.6 0.4 1 1 2.8e-10 3.5e-08 26.8 0.4 4 103 1346 1449 1343 1450 0.63 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_53 - 877 DUF87 PF01935.12 229 1.8e-07 24.3 0.1 1 1 2.9e-08 1.8e-06 21.1 0.0 26 215 483 663 469 676 0.76 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_56 - 73 DUF87 PF01935.12 229 0.00028 13.9 0.0 1 1 5.8e-06 0.00036 13.6 0.0 28 48 30 50 29 59 0.88 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 NB-ARC PF00931.17 287 0.00014 13.9 0.0 1 1 1.3e-06 0.00015 13.8 0.0 24 44 30 50 21 60 0.83 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 Septin PF00735.13 281 0.00051 12.3 0.0 1 1 4.5e-06 0.00055 12.1 0.0 8 29 29 50 25 68 0.87 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_109 - 753 AAA_22 PF13401.1 131 2.1e-06 21.1 1.1 1 1 2.1e-06 8.6e-05 15.9 0.6 8 110 51 225 44 242 0.70 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_56 - 73 AAA_22 PF13401.1 131 3.8e-06 20.3 0.0 1 1 1e-07 4.2e-06 20.1 0.0 8 38 29 51 21 70 0.81 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_35 - 1769 AAA_22 PF13401.1 131 0.00012 15.4 0.1 1 2 0.01 0.42 4.0 0.0 88 122 494 540 428 546 0.72 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_35 - 1769 AAA_22 PF13401.1 131 0.00012 15.4 0.1 2 2 0.00049 0.02 8.3 0.0 3 41 1009 1046 1006 1128 0.73 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_56 - 73 ATP_bind_1 PF03029.12 238 0.00074 12.2 0.0 1 1 7.4e-06 0.0009 12.0 0.0 1 20 30 49 30 55 0.87 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 PRK PF00485.13 194 0.00064 12.5 0.0 1 1 5.8e-06 0.0007 12.3 0.0 4 28 30 54 28 71 0.83 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_75 - 208 SRP54 PF00448.17 196 0.00046 12.8 0.0 1 1 7e-06 0.00085 12.0 0.0 11 94 11 87 3 173 0.73 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_109 - 753 KAP_NTPase PF07693.9 325 9.8e-65 211.8 0.0 1 1 1.1e-66 1.3e-64 211.3 0.0 1 325 28 337 28 337 0.95 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_75 - 208 AAA_17 PF13207.1 121 4.1e-05 17.6 0.0 1 1 8.8e-07 5.4e-05 17.2 0.0 9 78 11 102 10 186 0.70 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_56 - 73 AAA_17 PF13207.1 121 0.00011 16.3 0.0 1 1 2.3e-06 0.00014 15.9 0.0 3 24 29 50 29 63 0.84 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 Miro PF08477.8 119 0.00015 15.4 0.0 1 1 1.3e-06 0.00016 15.4 0.0 3 22 29 48 27 70 0.82 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 MobB PF03205.9 140 8.3e-05 15.5 0.0 1 1 2.6e-06 0.0001 15.2 0.0 4 26 29 51 28 59 0.88 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_75 - 208 MobB PF03205.9 140 0.0003 13.7 0.0 1 1 1.6e-05 0.00063 12.7 0.0 10 38 11 38 1 45 0.83 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_53 - 877 MobB PF03205.9 140 0.0003 13.7 0.0 1 2 0.014 0.56 3.1 0.0 29 75 103 148 94 195 0.76 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_53 - 877 MobB PF03205.9 140 0.0003 13.7 0.0 2 2 0.0011 0.047 6.6 0.0 4 28 484 508 482 523 0.82 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_75 - 208 ArsA_ATPase PF02374.10 305 2.3e-09 29.9 0.3 1 1 1e-10 6.3e-09 28.4 0.1 7 42 7 42 1 54 0.89 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_80 - 389 ArsA_ATPase PF02374.10 305 3.2e-06 19.5 0.1 1 2 2.3e-06 0.00014 14.1 0.0 9 40 115 147 108 153 0.90 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_80 - 389 ArsA_ATPase PF02374.10 305 3.2e-06 19.5 0.1 2 2 0.0064 0.39 2.8 0.0 125 136 233 244 223 248 0.88 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_56 - 73 T2SE PF00437.15 272 3.9e-05 15.8 0.1 1 1 3.8e-07 4.6e-05 15.6 0.1 129 154 26 51 20 59 0.86 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 Zeta_toxin PF06414.7 201 0.00035 12.9 0.0 1 1 3.6e-06 0.00044 12.5 0.0 20 41 29 50 27 57 0.85 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_75 - 208 VirC1 PF07015.6 231 1.5e-09 30.5 0.3 1 1 1.9e-10 1.2e-08 27.5 0.3 4 190 3 182 1 203 0.74 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_80 - 389 VirC1 PF07015.6 231 2.6e-05 16.6 0.1 1 2 4.9e-05 0.003 9.8 0.0 4 42 109 147 107 153 0.91 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_80 - 389 VirC1 PF07015.6 231 2.6e-05 16.6 0.1 2 2 0.0021 0.13 4.5 0.1 102 140 253 291 218 321 0.74 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_75 - 208 Fer4_NifH PF00142.13 273 5.5e-07 22.2 0.4 1 2 1.8e-07 2.1e-05 16.9 0.0 7 39 8 40 2 46 0.92 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_75 - 208 Fer4_NifH PF00142.13 273 5.5e-07 22.2 0.4 2 2 0.0024 0.29 3.4 0.3 143 247 100 206 89 207 0.68 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_109 - 753 Arch_ATPase PF01637.13 234 0.00016 14.6 0.6 1 1 1e-05 0.00062 12.7 0.6 10 145 38 227 32 236 0.76 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_56 - 73 Arch_ATPase PF01637.13 234 0.0016 11.3 0.0 1 1 3.2e-05 0.0019 11.0 0.0 24 44 29 49 25 59 0.89 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_109 - 753 AAA_16 PF13191.1 185 1.2e-08 28.3 0.9 1 1 1.2e-09 3.8e-08 26.7 0.9 11 166 34 215 29 236 0.59 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_56 - 73 AAA_16 PF13191.1 185 3e-05 17.3 0.1 1 1 2.1e-06 6.5e-05 16.1 0.1 20 54 21 55 6 68 0.81 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_38 - 733 AAA_16 PF13191.1 185 0.00014 15.1 0.0 1 1 1.1e-05 0.00033 13.9 0.0 20 60 181 230 174 267 0.73 # 49083 # 51281 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_75 - 208 AAA_16 PF13191.1 185 0.00019 14.6 0.1 1 2 0.00021 0.0064 9.6 0.0 34 71 11 49 9 68 0.85 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_75 - 208 AAA_16 PF13191.1 185 0.00019 14.6 0.1 2 2 0.021 0.63 3.1 0.0 55 119 101 167 88 206 0.69 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_56 - 73 AAA_23 PF13476.1 202 6.3e-05 16.5 0.0 1 1 5.5e-07 6.7e-05 16.5 0.0 23 39 29 45 9 47 0.88 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_109 - 753 AAA_18 PF13238.1 129 0.00027 14.5 0.5 1 2 5.7e-05 0.0069 9.9 0.0 1 23 50 76 50 125 0.82 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_109 - 753 AAA_18 PF13238.1 129 0.00027 14.5 0.5 2 2 0.028 3.5 1.2 0.0 24 85 598 651 566 666 0.79 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_80 - 389 CbiA PF01656.18 195 1.3e-32 105.9 0.0 1 1 3e-34 1.8e-32 105.5 0.0 1 174 109 320 109 340 0.77 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_75 - 208 CbiA PF01656.18 195 1.6e-32 105.7 0.3 1 1 5.1e-34 3.1e-32 104.7 0.3 1 161 3 144 3 176 0.75 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_56 - 73 AAA_29 PF13555.1 62 0.00015 14.5 0.1 1 1 1.6e-06 0.0002 14.1 0.1 25 43 27 45 13 47 0.82 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_29 - 75 PAPS_reduct PF01507.14 174 9.4e-08 25.2 0.2 1 1 1e-09 1.2e-07 24.9 0.2 134 164 2 32 1 34 0.94 # 38057 # 38281 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 1_56 - 73 MMR_HSR1 PF01926.18 116 0.00064 12.9 0.0 1 1 5.9e-06 0.00072 12.7 0.0 3 26 29 51 27 67 0.79 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 DUF258 PF03193.11 161 0.00024 13.5 0.0 1 1 2.4e-06 0.00029 13.2 0.0 38 60 28 50 22 61 0.85 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_38 - 733 TraG-D_C PF12696.2 128 7.1e-16 51.5 0.0 1 1 2.6e-17 1.6e-15 50.3 0.0 1 127 419 541 419 542 0.84 # 49083 # 51281 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_53 - 877 TraG-D_C PF12696.2 128 0.0011 12.0 0.1 1 1 3.7e-05 0.0023 11.0 0.1 13 77 709 773 694 799 0.82 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_75 - 208 AAA_31 PF13614.1 157 2.2e-09 30.6 0.0 1 2 8.3e-09 5.1e-07 22.9 0.0 2 42 2 42 1 45 0.93 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_75 - 208 AAA_31 PF13614.1 157 2.2e-09 30.6 0.0 2 2 0.0021 0.13 5.4 0.0 115 153 74 111 62 115 0.81 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_80 - 389 AAA_31 PF13614.1 157 2.2e-06 20.9 0.0 1 2 8.8e-06 0.00054 13.1 0.0 2 49 108 155 107 195 0.88 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_80 - 389 AAA_31 PF13614.1 157 2.2e-06 20.9 0.0 2 2 0.0018 0.11 5.6 0.0 115 151 228 267 213 271 0.80 # 86215 # 87381 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.500 1_56 - 73 NTPase_1 PF03266.10 168 0.00028 13.8 0.0 1 1 2.6e-06 0.00032 13.6 0.0 3 26 29 52 27 63 0.81 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 AAA_33 PF13671.1 143 0.00086 12.4 0.0 1 1 8.5e-06 0.001 12.1 0.0 3 22 29 48 28 59 0.86 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_35 - 1769 AAA_30 PF13604.1 196 4.7e-43 140.2 13.7 1 2 0.00059 0.024 7.4 2.5 8 127 426 540 424 565 0.85 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_35 - 1769 AAA_30 PF13604.1 196 4.7e-43 140.2 13.7 2 2 1.8e-44 7.3e-43 139.6 0.9 2 185 994 1180 993 1183 0.94 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_109 - 753 AAA_30 PF13604.1 196 9.7e-06 18.4 0.0 1 1 6.3e-07 2.6e-05 17.1 0.0 7 47 36 77 31 87 0.87 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_56 - 73 AAA_30 PF13604.1 196 9.8e-06 18.4 0.0 1 1 2.5e-07 1e-05 18.4 0.0 21 55 28 63 21 72 0.81 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 FtsK_SpoIIIE PF01580.13 205 3.4e-05 16.6 0.0 1 1 5.6e-07 3.4e-05 16.6 0.0 39 60 24 47 3 54 0.79 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_53 - 877 FtsK_SpoIIIE PF01580.13 205 0.0001 15.0 0.1 1 2 1.1e-05 0.00067 12.3 0.0 34 64 474 506 450 510 0.84 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_53 - 877 FtsK_SpoIIIE PF01580.13 205 0.0001 15.0 0.1 2 2 0.07 4.3 -0.1 0.0 76 146 532 612 530 722 0.74 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_109 - 753 AAA_35 PF14516.1 331 0.00047 12.0 0.1 1 2 1.4e-05 0.0017 10.1 0.0 22 67 37 84 30 92 0.84 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_109 - 753 AAA_35 PF14516.1 331 0.00047 12.0 0.1 2 2 0.074 9.1 -2.1 0.1 110 152 179 222 167 228 0.63 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_56 - 73 ABC_tran PF00005.22 137 1.6e-05 18.4 0.0 1 1 1.4e-07 1.7e-05 18.3 0.0 15 37 29 51 23 71 0.85 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 TIGR03263 TIGR03263 180 0.00021 13.8 0.0 1 1 2e-06 0.00024 13.6 0.0 5 43 29 69 27 72 0.81 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 ATP-synt_ab PF00006.20 215 0.0005 12.8 0.0 1 1 4.3e-06 0.00052 12.7 0.0 18 44 28 54 15 62 0.85 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_109 - 753 DUF2791 PF10923.3 417 0.00011 14.1 0.0 1 1 1.8e-06 0.00021 13.1 0.0 29 77 27 75 24 98 0.83 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_22 - 152 SAM_MT PF04445.8 235 0.00085 11.7 0.0 1 1 1.2e-05 0.0014 10.9 0.0 140 192 10 67 3 77 0.71 # 30475 # 30930 # 1 # ID=1_22;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_35 - 1769 AAA_19 PF13245.1 76 1.1e-08 28.0 2.3 1 1 5e-10 2e-08 27.1 0.5 2 76 1001 1072 1000 1072 0.82 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_75 - 208 AAA_19 PF13245.1 76 4e-07 22.9 0.1 1 1 2.6e-08 1.1e-06 21.6 0.1 20 74 11 68 3 70 0.77 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_56 - 73 AAA_19 PF13245.1 76 0.00051 13.0 0.0 1 1 1.5e-05 0.00059 12.8 0.0 7 46 23 59 20 71 0.69 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_53 - 877 AAA_10 PF12846.2 304 1e-51 169.3 0.2 1 1 5.6e-53 1.7e-51 168.6 0.2 1 293 480 768 480 774 0.90 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 733 AAA_10 PF12846.2 304 2.7e-08 26.7 0.0 1 1 2.2e-08 6.8e-07 22.1 0.0 3 291 187 488 186 498 0.71 # 49083 # 51281 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_56 - 73 AAA_10 PF12846.2 304 1.5e-05 17.7 0.0 1 1 5.6e-07 1.7e-05 17.5 0.0 3 27 27 51 26 61 0.88 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_75 - 208 AAA_10 PF12846.2 304 0.00019 14.1 0.0 1 1 7.7e-06 0.00024 13.8 0.0 11 47 11 49 9 89 0.87 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_35 - 1769 Viral_helicase1 PF01443.13 234 0.0001 15.1 0.1 1 2 0.0018 0.22 4.2 0.0 3 21 1015 1033 1013 1137 0.79 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_35 - 1769 Viral_helicase1 PF01443.13 234 0.0001 15.1 0.1 2 2 9.3e-05 0.011 8.3 0.1 112 234 1326 1451 1316 1451 0.60 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_56 - 73 PduV-EutP PF10662.4 143 0.00012 14.7 0.0 1 1 1.1e-06 0.00014 14.6 0.0 6 24 30 48 26 63 0.82 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 DUF853 PF05872.7 504 0.0011 10.5 0.1 1 1 1.1e-05 0.0013 10.2 0.1 20 50 26 54 19 58 0.87 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_38 - 733 TrwB_AAD_bind PF10412.4 386 7.5e-143 468.9 0.0 1 1 2.3e-144 9.4e-143 468.6 0.0 2 385 172 560 171 561 0.99 # 49083 # 51281 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_53 - 877 TrwB_AAD_bind PF10412.4 386 3.8e-06 18.9 0.1 1 2 5.3e-07 2.2e-05 16.4 0.0 15 53 480 518 470 571 0.82 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_53 - 877 TrwB_AAD_bind PF10412.4 386 3.8e-06 18.9 0.1 2 2 0.07 2.8 -0.5 0.0 240 318 687 771 666 775 0.72 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_56 - 73 TrwB_AAD_bind PF10412.4 386 0.00019 13.3 0.0 1 1 5.1e-06 0.00021 13.2 0.0 11 40 21 50 10 54 0.83 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_35 - 1769 AAA_11 PF13086.1 236 7.1e-06 18.9 0.0 1 2 1e-05 0.0012 11.6 0.0 3 70 995 1059 993 1081 0.83 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_35 - 1769 AAA_11 PF13086.1 236 7.1e-06 18.9 0.0 2 2 0.0014 0.17 4.5 0.0 196 232 1092 1131 1083 1132 0.79 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_38 - 733 T4SS-DNA_transf PF02534.9 469 3.5e-08 25.6 0.0 1 2 0.014 0.86 1.2 0.0 127 180 259 310 228 354 0.83 # 49083 # 51281 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_38 - 733 T4SS-DNA_transf PF02534.9 469 3.5e-08 25.6 0.0 2 2 6.3e-09 3.9e-07 22.1 0.0 284 371 402 486 364 536 0.79 # 49083 # 51281 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_53 - 877 T4SS-DNA_transf PF02534.9 469 1.9e-05 16.5 1.1 1 1 7.1e-07 4.4e-05 15.3 0.9 164 387 545 779 464 799 0.73 # 63800 # 66430 # -1 # ID=1_53;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.577 1_38 - 733 PIF1 PF05970.9 364 0.0003 13.0 0.0 1 1 3.6e-06 0.00045 12.4 0.0 18 55 181 218 169 223 0.88 # 49083 # 51281 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_56 - 73 GTP_EFTU PF00009.22 188 0.00045 12.8 0.0 1 1 4.4e-06 0.00054 12.6 0.0 3 28 25 50 23 60 0.85 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 Gtr1_RagA PF04670.7 232 0.001 11.4 0.0 1 1 9.9e-06 0.0012 11.2 0.0 4 28 30 54 28 64 0.88 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 RNA_helicase PF00910.17 107 0.00021 14.6 0.0 1 1 2.6e-06 0.00032 14.1 0.0 2 23 29 50 28 69 0.83 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_56 - 73 UPF0079 PF02367.12 123 0.00032 13.5 0.1 1 1 6.6e-06 0.0004 13.2 0.1 20 41 30 51 17 63 0.83 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_109 - 753 UPF0079 PF02367.12 123 0.00086 12.2 0.4 1 1 3.5e-05 0.0021 10.9 0.1 7 44 34 76 29 85 0.73 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_56 - 73 NACHT PF05729.7 166 1.4e-05 18.0 0.0 1 1 4.4e-07 1.8e-05 17.6 0.0 4 26 29 51 28 59 0.86 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_109 - 753 NACHT PF05729.7 166 0.00024 14.0 0.8 1 3 0.00029 0.012 8.5 0.0 3 31 50 78 48 124 0.80 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_109 - 753 NACHT PF05729.7 166 0.00024 14.0 0.8 2 3 0.083 3.4 0.5 0.1 71 96 189 214 162 230 0.67 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_109 - 753 NACHT PF05729.7 166 0.00024 14.0 0.8 3 3 0.058 2.3 1.0 0.1 33 115 469 574 456 591 0.71 # 110999 # 113257 # 1 # ID=1_109;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.575 1_35 - 1769 NACHT PF05729.7 166 0.00041 13.2 0.0 1 1 2.5e-05 0.001 12.0 0.0 1 66 1011 1080 1011 1099 0.69 # 42998 # 48304 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.638 1_56 - 73 AAA_25 PF13481.1 194 0.00066 12.3 0.0 1 1 6.4e-06 0.00079 12.0 0.0 37 65 29 57 26 69 0.79 # 67391 # 67609 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.534 1_75 - 208 APS_kinase PF01583.15 157 0.0003 13.7 0.1 1 2 2.3e-05 0.0029 10.5 0.0 11 39 10 38 2 45 0.90 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_75 - 208 APS_kinase PF01583.15 157 0.0003 13.7 0.1 2 2 0.019 2.3 1.0 0.0 43 99 64 126 61 153 0.62 # 82560 # 83183 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3997aae8-3011-4f7c-9e87-82f87fe52bf8 # Target file: checkm_output/bins/pm988/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm988/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3997aae8-3011-4f7c-9e87-82f87fe52bf8 checkm_output/bins/pm988/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:51 2020 # [ok]