# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_27 - 341 cobW PF02492.14 178 8.7e-05 13.5 0.0 1 1 6.8e-06 0.00025 12.0 0.0 3 29 155 180 153 197 0.71 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_10 - 248 MipZ PF09140.6 261 2.3e-08 24.8 5.5 1 2 0.00034 0.012 6.1 0.6 6 23 39 56 34 78 0.83 # 6086 # 6829 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_10 - 248 MipZ PF09140.6 261 2.3e-08 24.8 5.5 2 2 6.7e-09 2.4e-07 21.5 0.5 83 150 91 158 65 187 0.83 # 6086 # 6829 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_3 - 77 SSB PF00436.20 104 7e-10 30.3 0.2 1 1 2.5e-11 8.9e-10 29.9 0.2 72 103 1 35 1 36 0.90 # 1677 # 1907 # 1 # ID=1_3;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.502 1_27 - 341 AAA_22 PF13401.1 131 1.8e-05 16.4 0.0 1 1 1.1e-06 4.1e-05 15.2 0.0 2 67 150 228 148 259 0.68 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 KAP_NTPase PF07693.9 325 2.5e-05 14.8 0.0 1 1 1.6e-06 5.7e-05 13.6 0.0 18 53 150 183 135 225 0.78 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 AAA_17 PF13207.1 121 6.2e-06 18.5 0.0 1 1 3.4e-07 1.2e-05 17.6 0.0 1 64 154 226 154 275 0.61 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 T2SE PF00437.15 272 3e-48 155.4 0.0 1 1 9.8e-50 3.5e-48 155.2 0.0 7 270 31 302 25 304 0.94 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 Zeta_toxin PF06414.7 201 8.3e-05 13.2 0.0 1 1 5.7e-06 0.0002 11.9 0.0 14 43 150 179 139 230 0.82 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 Arch_ATPase PF01637.13 234 2.6e-05 15.4 0.0 1 1 1.4e-06 4.9e-05 14.5 0.0 6 50 140 181 139 227 0.76 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 AAA_16 PF13191.1 185 8.2e-07 20.6 0.0 1 1 4.1e-08 1.5e-06 19.8 0.0 20 57 148 185 138 228 0.75 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 AAA_23 PF13476.1 202 9.2e-07 20.8 0.0 1 2 0.033 1.2 0.8 0.0 70 133 34 92 5 110 0.78 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 AAA_23 PF13476.1 202 9.2e-07 20.8 0.0 2 2 2.7e-07 9.6e-06 17.5 0.0 19 39 152 172 142 174 0.91 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 AAA_18 PF13238.1 129 2.9e-05 15.9 0.0 1 1 2e-06 7e-05 14.6 0.0 2 23 156 179 156 225 0.76 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_10 - 248 CbiA PF01656.18 195 2e-05 15.5 2.5 1 1 1.3e-06 4.8e-05 14.3 2.5 3 173 38 187 36 205 0.67 # 6086 # 6829 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_27 - 341 KaiC PF06745.8 227 0.00013 12.5 0.0 1 2 0.07 2.5 -1.5 0.0 137 180 23 63 15 80 0.72 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 KaiC PF06745.8 227 0.00013 12.5 0.0 2 2 1.3e-05 0.00045 10.8 0.0 16 81 149 210 138 253 0.72 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 AAA_29 PF13555.1 62 0.00012 13.1 0.0 1 1 8.8e-06 0.00032 11.7 0.0 21 40 150 169 144 170 0.82 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 DUF258 PF03193.11 161 0.00021 12.0 0.0 1 1 1e-05 0.00037 11.2 0.0 22 69 138 186 123 196 0.81 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 ABC_tran PF00005.22 137 3.9e-05 15.5 0.0 1 1 2.3e-06 8.2e-05 14.4 0.0 8 49 149 190 146 211 0.82 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_31 - 860 AAA_10 PF12846.2 304 3.2e-34 110.1 0.0 1 1 1.6e-35 5.7e-34 109.3 0.0 7 303 480 770 475 771 0.91 # 20460 # 23039 # 1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.419 1_27 - 341 Herpes_ori_bp PF02399.10 824 0.00041 9.7 0.0 1 1 1.8e-05 0.00065 9.1 0.0 47 78 150 180 137 184 0.85 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_27 - 341 UPF0079 PF02367.12 123 1e-06 19.9 0.0 1 1 4.9e-08 1.8e-06 19.1 0.0 7 44 144 181 138 186 0.85 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_10 - 248 AAA_24 PF13479.1 213 9.9e-05 13.4 0.2 1 1 5.1e-06 0.00018 12.5 0.1 5 76 32 114 28 121 0.82 # 6086 # 6829 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.437 1_27 - 341 NACHT PF05729.7 166 0.00031 11.9 0.0 1 1 1.8e-05 0.00066 10.8 0.0 3 28 155 180 153 233 0.64 # 18086 # 19108 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.449 1_32 - 271 IPT PF01745.11 233 0.0018 8.9 5.0 1 2 0.019 0.67 0.5 0.1 125 173 41 90 28 99 0.75 # 23036 # 23848 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.407 1_32 - 271 IPT PF01745.11 233 0.0018 8.9 5.0 2 2 3.8e-05 0.0014 9.3 1.8 134 214 168 250 157 264 0.88 # 23036 # 23848 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.407 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/15194086-e68a-469d-ab0a-9bdd617a3094 # Target file: checkm_output/bins/pm983/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm983/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/15194086-e68a-469d-ab0a-9bdd617a3094 checkm_output/bins/pm983/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:48 2020 # [ok]