# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_55 - 215 UPF0020 PF01170.13 180 6.1e-07 21.7 0.0 1 2 0.00027 0.021 6.9 0.0 102 118 16 32 2 42 0.75 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_55 - 215 UPF0020 PF01170.13 180 6.1e-07 21.7 0.0 2 2 5.5e-06 0.00044 12.4 0.0 26 54 161 189 156 211 0.82 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_58 - 260 IstB_IS21 PF01695.12 178 8.4e-72 232.9 0.1 1 2 0.031 2.5 0.1 0.0 64 96 25 56 22 60 0.70 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 IstB_IS21 PF01695.12 178 8.4e-72 232.9 0.1 2 2 3.4e-73 2.7e-71 231.2 0.0 1 178 56 235 56 235 0.97 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_65 - 214 MipZ PF09140.6 261 1.4e-17 56.2 0.2 1 2 2e-16 1.6e-14 46.1 0.2 2 145 2 125 1 133 0.83 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_65 - 214 MipZ PF09140.6 261 1.4e-17 56.2 0.2 2 2 0.0045 0.36 2.4 0.0 215 237 178 200 174 208 0.81 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_4 - 730 DUF87 PF01935.12 229 4.7e-05 15.9 0.0 1 1 1.2e-06 9.8e-05 14.8 0.0 13 39 128 153 115 156 0.79 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_58 - 260 AAA_22 PF13401.1 131 1.2e-06 21.3 0.5 1 2 3.5e-05 0.0014 11.4 0.1 6 24 104 122 99 137 0.82 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 AAA_22 PF13401.1 131 1.2e-06 21.3 0.5 2 2 0.00083 0.033 6.9 0.0 88 103 154 181 126 203 0.68 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_37 - 508 AAA_22 PF13401.1 131 3.2e-06 19.9 0.1 1 1 2e-07 7.9e-06 18.7 0.1 4 57 219 270 211 296 0.81 # 34259 # 35782 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.650 1_65 - 214 SRP54 PF00448.17 196 4.5e-09 28.6 0.1 1 1 1.7e-10 1.4e-08 27.0 0.1 5 102 3 95 1 163 0.83 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_55 - 215 N6_N4_Mtase PF01555.13 231 7.8e-34 109.7 0.0 1 1 3.4e-33 2.7e-31 101.4 0.0 1 226 21 198 21 202 0.90 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_58 - 260 AAA_17 PF13207.1 121 0.00025 14.5 0.0 1 1 7e-06 0.00056 13.4 0.0 2 27 105 133 104 197 0.76 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_65 - 214 ArsA_ATPase PF02374.10 305 4.8e-05 15.1 0.6 1 3 4.9e-06 0.00039 12.0 0.0 8 63 8 67 1 71 0.78 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_65 - 214 ArsA_ATPase PF02374.10 305 4.8e-05 15.1 0.6 2 3 0.011 0.89 1.0 0.0 120 135 70 87 51 90 0.72 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_65 - 214 ArsA_ATPase PF02374.10 305 4.8e-05 15.1 0.6 3 3 0.086 6.9 -1.9 0.0 182 199 114 132 90 146 0.68 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_58 - 260 PhoH PF02562.11 205 8.5e-07 20.9 0.1 1 1 3e-08 2.4e-06 19.5 0.0 11 47 94 130 83 139 0.79 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_37 - 508 T2SE PF00437.15 272 3.3e-36 117.1 0.0 1 1 1.2e-37 4.7e-36 116.6 0.0 11 270 91 368 84 370 0.84 # 34259 # 35782 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.650 1_28 - 389 T2SE PF00437.15 272 6.4e-26 83.4 0.0 1 1 2.8e-27 1.1e-25 82.6 0.0 9 264 27 299 22 309 0.81 # 26837 # 28003 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.655 1_65 - 214 Methyltransf_24 PF13578.1 106 0.00012 15.5 0.0 1 1 2.7e-06 0.00022 14.7 0.0 17 78 26 87 5 110 0.70 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_65 - 214 VirC1 PF07015.6 231 7.1e-09 27.6 0.1 1 1 1.6e-10 1.2e-08 26.8 0.1 8 198 7 197 1 207 0.73 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_58 - 260 AAA_16 PF13191.1 185 2.5e-05 16.9 2.4 1 1 4.6e-07 3.6e-05 16.4 0.2 10 44 91 122 86 150 0.75 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_37 - 508 Kinesin PF00225.18 335 0.00062 11.1 0.0 1 1 1.2e-05 0.00098 10.4 0.0 64 94 208 238 195 251 0.90 # 34259 # 35782 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.650 1_65 - 214 CbiA PF01656.18 195 1.8e-18 59.2 0.0 1 1 5.3e-20 2.1e-18 59.0 0.0 6 146 8 130 2 172 0.80 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_58 - 260 CbiA PF01656.18 195 0.00088 11.3 0.0 1 1 3.1e-05 0.0013 10.8 0.0 6 30 109 133 105 202 0.94 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 AAA_14 PF13173.1 128 2.4e-06 20.1 0.0 1 1 5.8e-08 4.6e-06 19.2 0.0 3 85 103 188 101 220 0.67 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 AAA_29 PF13555.1 62 0.00012 14.2 0.0 1 1 7.1e-06 0.00028 13.0 0.0 16 59 95 139 89 141 0.74 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_15 - 1017 AAA_29 PF13555.1 62 0.00061 12.0 0.0 1 1 3.7e-05 0.0015 10.7 0.0 22 43 494 515 487 531 0.76 # 13136 # 16186 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 1_58 - 260 AAA PF00004.24 132 8.2e-08 25.1 0.0 1 1 1.8e-09 1.4e-07 24.4 0.0 1 71 105 177 105 207 0.76 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 Bac_DnaA PF00308.13 219 3.7e-10 32.3 0.0 1 1 7e-12 5.6e-10 31.8 0.0 37 134 105 201 75 206 0.88 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 Sigma54_activat PF00158.21 168 0.00021 13.4 0.1 1 1 1.6e-05 0.0013 10.8 0.1 19 53 99 133 82 199 0.72 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 DUF258 PF03193.11 161 1.1e-05 17.2 0.0 1 1 4.6e-07 1.8e-05 16.5 0.0 21 59 88 126 70 173 0.70 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_15 - 1017 DUF258 PF03193.11 161 0.00017 13.4 0.0 1 1 8.8e-06 0.00035 12.4 0.0 32 54 492 514 474 525 0.85 # 13136 # 16186 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 1_4 - 730 TraG-D_C PF12696.2 128 2.9e-07 23.0 0.0 1 1 7.6e-09 6.1e-07 22.0 0.0 1 96 439 533 439 562 0.73 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_65 - 214 AAA_31 PF13614.1 157 1.6e-07 24.0 0.2 1 1 5.8e-08 4.6e-06 19.2 0.2 8 63 8 75 1 130 0.67 # 57993 # 58634 # 1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.491 1_58 - 260 NTPase_1 PF03266.10 168 0.00037 12.8 0.0 1 2 0.0019 0.16 4.3 0.0 2 30 105 133 104 141 0.80 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 NTPase_1 PF03266.10 168 0.00037 12.8 0.0 2 2 0.00044 0.035 6.4 0.0 88 111 157 180 143 203 0.75 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_55 - 215 Methyltransf_26 PF13659.1 117 1.9e-10 33.5 0.1 1 2 9.6e-08 7.7e-06 18.6 0.0 53 113 3 70 2 75 0.72 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_55 - 215 Methyltransf_26 PF13659.1 117 1.9e-10 33.5 0.1 2 2 5.7e-06 0.00046 12.8 0.1 4 36 167 198 164 214 0.77 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_37 - 508 AAA_30 PF13604.1 196 6e-06 18.5 0.1 1 1 3.7e-07 1.5e-05 17.2 0.0 4 44 205 245 202 276 0.86 # 34259 # 35782 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.650 1_4 - 730 AAA_30 PF13604.1 196 0.00017 13.8 0.3 1 2 0.055 2.2 0.4 0.0 21 35 140 154 132 161 0.81 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_4 - 730 AAA_30 PF13604.1 196 0.00017 13.8 0.3 2 2 4.2e-05 0.0017 10.5 0.1 95 156 436 499 393 534 0.80 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_4 - 730 FtsK_SpoIIIE PF01580.13 205 0.00027 13.0 0.0 1 1 1.3e-05 0.001 11.1 0.0 27 56 125 155 116 162 0.84 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_73 - 293 Caps_synth_GfcC PF06251.6 229 4.2e-05 15.4 0.1 1 1 7.9e-07 6.3e-05 14.8 0.1 99 169 38 111 36 120 0.90 # 62585 # 63463 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.519 1_58 - 260 ABC_tran PF00005.22 137 1.9e-05 17.6 0.2 1 2 1.6e-06 0.00012 14.9 0.1 8 31 99 122 93 130 0.87 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 ABC_tran PF00005.22 137 1.9e-05 17.6 0.2 2 2 0.098 7.8 -0.6 0.0 108 134 144 172 125 174 0.73 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_55 - 215 Cons_hypoth95 PF03602.10 183 3.7e-05 15.8 0.1 1 3 0.00046 0.036 6.0 0.1 112 127 18 33 2 78 0.78 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_55 - 215 Cons_hypoth95 PF03602.10 183 3.7e-05 15.8 0.1 2 3 0.044 3.5 -0.5 0.0 72 127 53 104 41 115 0.61 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_55 - 215 Cons_hypoth95 PF03602.10 183 3.7e-05 15.8 0.1 3 3 0.00027 0.022 6.7 0.0 42 57 163 178 145 184 0.83 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_58 - 260 RuvB_N PF05496.7 234 0.00026 12.7 0.0 1 1 5.7e-06 0.00045 11.9 0.0 51 86 103 141 94 188 0.64 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 AAA_19 PF13245.1 76 0.00012 14.5 0.0 1 1 3.4e-06 0.00027 13.3 0.0 9 37 102 129 96 154 0.82 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_15 - 1017 AAA_10 PF12846.2 304 7.7e-30 96.9 0.0 1 1 4.7e-31 1.3e-29 96.2 0.0 3 303 497 896 495 897 0.84 # 13136 # 16186 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.666 1_4 - 730 AAA_10 PF12846.2 304 2.2e-09 29.7 0.1 1 1 1.3e-10 3.4e-09 29.1 0.1 2 297 138 513 137 519 0.69 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_58 - 260 AAA_10 PF12846.2 304 3.3e-05 16.0 0.4 1 1 8.7e-06 0.00023 13.2 0.0 3 33 104 134 102 172 0.87 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_4 - 730 TrwB_AAD_bind PF10412.4 386 4.7e-11 34.4 0.5 1 3 5.6e-07 4.5e-05 14.7 0.0 11 52 133 174 127 179 0.85 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_4 - 730 TrwB_AAD_bind PF10412.4 386 4.7e-11 34.4 0.5 2 3 0.0025 0.2 2.7 0.0 92 144 238 289 227 335 0.71 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_4 - 730 TrwB_AAD_bind PF10412.4 386 4.7e-11 34.4 0.5 3 3 1.4e-06 0.00011 13.5 0.1 248 373 443 568 428 575 0.73 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_4 - 730 T4SS-DNA_transf PF02534.9 469 2.8e-08 25.3 0.0 1 1 5.1e-10 4.1e-08 24.7 0.0 34 384 125 517 104 573 0.73 # 1708 # 3897 # -1 # ID=1_4;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.670 1_58 - 260 AAA_25 PF13481.1 194 2.3e-06 19.7 0.0 1 1 8.8e-08 3.5e-06 19.1 0.0 21 58 89 127 71 197 0.76 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_37 - 508 AAA_25 PF13481.1 194 0.00028 12.9 0.1 1 1 2.7e-05 0.0011 11.0 0.0 13 50 198 236 189 265 0.83 # 34259 # 35782 # -1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.650 1_55 - 215 Methyltransf_15 PF09445.5 164 0.00083 11.5 0.1 1 2 0.027 2.2 0.4 0.0 53 80 4 30 2 36 0.92 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_55 - 215 Methyltransf_15 PF09445.5 164 0.00083 11.5 0.1 2 2 8e-05 0.0064 8.6 0.0 3 31 166 194 164 203 0.88 # 49860 # 50504 # -1 # ID=1_55;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.609 1_58 - 260 AAA_28 PF13521.1 163 0.00022 13.8 1.5 1 2 0.09 7.2 -0.9 0.1 74 108 25 60 2 82 0.55 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 AAA_28 PF13521.1 163 0.00022 13.8 1.5 2 2 4.5e-06 0.00036 13.1 0.1 1 44 104 152 104 213 0.86 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 1_58 - 260 AAA_5 PF07728.9 139 2.2e-05 16.8 0.1 1 1 1.1e-06 8.5e-05 14.9 0.1 1 74 104 173 104 180 0.75 # 51692 # 52471 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.565 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/cd247e8a-48fc-46da-8e94-6bc02d7a506b # Target file: checkm_output/bins/pm978/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm978/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/cd247e8a-48fc-46da-8e94-6bc02d7a506b checkm_output/bins/pm978/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:46 2020 # [ok]