# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_75 - 215 UPF0020 PF01170.13 180 2e-06 20.4 0.0 1 2 0.00021 0.022 7.3 0.0 102 118 16 32 3 41 0.76 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_75 - 215 UPF0020 PF01170.13 180 2e-06 20.4 0.0 2 2 1.5e-05 0.0015 11.0 0.0 26 51 161 186 157 203 0.81 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_76 - 263 Seryl_tRNA_N PF02403.17 108 0.00051 13.0 6.0 1 1 1e-05 0.0011 12.0 6.0 50 104 111 167 94 170 0.86 # 69661 # 70449 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.351 1_101 - 213 MipZ PF09140.6 261 2.5e-07 22.9 1.2 1 3 1.7e-05 0.0017 10.3 0.1 5 51 7 53 3 66 0.88 # 88684 # 89322 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_101 - 213 MipZ PF09140.6 261 2.5e-07 22.9 1.2 2 3 1.4e-05 0.0014 10.6 0.1 88 135 69 116 55 129 0.85 # 88684 # 89322 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_101 - 213 MipZ PF09140.6 261 2.5e-07 22.9 1.2 3 3 0.049 5 -1.0 0.0 205 237 160 193 133 202 0.83 # 88684 # 89322 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_18 - 1948 UvrD_C_2 PF13538.1 104 3.7e-07 23.2 0.2 1 1 2.7e-08 2.8e-06 20.4 0.1 54 103 1466 1525 1402 1526 0.68 # 15413 # 21256 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_89 - 142 Usp PF00582.21 140 2.7e-08 27.1 0.3 1 1 4.4e-10 4.5e-08 26.3 0.3 2 139 4 137 4 138 0.72 # 80397 # 80822 # -1 # ID=1_89;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_39 - 882 DUF87 PF01935.12 229 1.6e-06 21.0 0.0 1 1 6.9e-08 7e-06 18.9 0.0 26 215 488 668 482 683 0.67 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_39 - 882 AAA_22 PF13401.1 131 0.0007 12.7 0.3 1 2 0.00013 0.013 8.6 0.2 8 27 489 508 487 635 0.82 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_39 - 882 AAA_22 PF13401.1 131 0.0007 12.7 0.3 2 2 0.041 4.2 0.5 0.0 78 100 687 708 660 737 0.69 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_75 - 215 N6_N4_Mtase PF01555.13 231 2.9e-34 111.4 0.0 1 2 5.3e-13 5.4e-11 35.3 0.0 1 114 21 124 21 141 0.88 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_75 - 215 N6_N4_Mtase PF01555.13 231 2.9e-34 111.4 0.0 2 2 4.7e-25 4.8e-23 74.7 0.0 169 226 141 198 127 202 0.91 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_19 - 868 AAA_17 PF13207.1 121 6.4e-05 16.7 0.1 1 1 7.2e-06 0.00037 14.3 0.0 3 55 197 251 197 323 0.67 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_39 - 882 AAA_17 PF13207.1 121 0.001 12.9 0.0 1 1 4.8e-05 0.0025 11.6 0.0 3 66 489 565 487 657 0.60 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_19 - 868 MobB PF03205.9 140 0.00015 14.4 0.0 1 1 3.4e-06 0.00035 13.2 0.0 5 34 198 227 195 233 0.89 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_101 - 213 ArsA_ATPase PF02374.10 305 0.00021 13.3 0.3 1 1 3e-06 0.0003 12.8 0.3 5 23 7 25 1 40 0.84 # 88684 # 89322 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_19 - 868 Arch_ATPase PF01637.13 234 7.4e-05 15.4 0.0 1 1 1.7e-06 0.00018 14.2 0.0 20 71 193 246 185 356 0.85 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_19 - 868 AAA_16 PF13191.1 185 6.5e-09 28.9 0.0 1 1 1.3e-09 6.4e-08 25.7 0.0 16 63 185 241 182 263 0.87 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_39 - 882 AAA_16 PF13191.1 185 7.6e-05 15.7 0.0 1 1 4.7e-06 0.00024 14.1 0.0 15 55 476 517 470 600 0.87 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_19 - 868 AAA_18 PF13238.1 129 0.00057 13.2 0.1 1 1 2.4e-05 0.0025 11.1 0.0 2 42 197 249 197 294 0.66 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_101 - 213 CbiA PF01656.18 195 1.5e-13 43.5 0.7 1 1 5.3e-15 5.4e-13 41.7 0.4 3 178 7 164 5 179 0.70 # 88684 # 89322 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_39 - 882 AAA_29 PF13555.1 62 0.00073 12.0 0.0 1 1 3.9e-05 0.002 10.6 0.0 24 43 486 505 473 511 0.81 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_19 - 868 AAA_29 PF13555.1 62 0.00093 11.7 0.1 1 1 3.9e-05 0.002 10.6 0.1 25 40 195 210 182 211 0.80 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_19 - 868 MMR_HSR1 PF01926.18 116 0.00022 14.1 0.0 1 1 4.7e-06 0.00048 13.1 0.0 4 39 198 238 195 297 0.82 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_63 - 273 N6_Mtase PF02384.11 311 4.4e-09 28.7 0.0 1 1 5.7e-11 5.8e-09 28.3 0.0 24 116 137 235 128 263 0.84 # 59972 # 60790 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 1_19 - 868 TraG-D_C PF12696.2 128 2.3e-22 72.2 0.0 1 1 4.8e-24 4.9e-22 71.1 0.0 1 128 426 549 426 549 0.84 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_101 - 213 AAA_31 PF13614.1 157 0.0011 11.8 0.1 1 2 7.1e-05 0.0072 9.2 0.0 2 24 4 26 4 42 0.91 # 88684 # 89322 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_101 - 213 AAA_31 PF13614.1 157 0.0011 11.8 0.1 2 2 0.045 4.6 0.1 0.0 112 151 72 112 62 116 0.75 # 88684 # 89322 # -1 # ID=1_101;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.460 1_75 - 215 Methyltransf_26 PF13659.1 117 1.5e-10 34.1 0.3 1 2 3.5e-07 1.8e-05 17.7 0.0 54 112 4 69 2 81 0.73 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_75 - 215 Methyltransf_26 PF13659.1 117 1.5e-10 34.1 0.3 2 2 3.6e-06 0.00018 14.5 0.2 1 45 164 207 164 214 0.81 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_63 - 273 Methyltransf_26 PF13659.1 117 3.8e-05 16.7 0.0 1 1 1.8e-06 9e-05 15.5 0.0 5 63 172 237 169 259 0.84 # 59972 # 60790 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.535 1_18 - 1948 AAA_30 PF13604.1 196 2.7e-40 131.0 1.6 1 2 0.0043 0.44 3.0 0.1 42 127 554 633 539 658 0.72 # 15413 # 21256 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_18 - 1948 AAA_30 PF13604.1 196 2.7e-40 131.0 1.6 2 2 2.6e-42 2.7e-40 131.0 1.6 2 187 1055 1244 1054 1250 0.95 # 15413 # 21256 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_39 - 882 ABC_tran PF00005.22 137 0.001 12.3 1.0 1 1 2.6e-05 0.0027 11.0 0.4 14 40 488 514 484 624 0.82 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_75 - 215 Cons_hypoth95 PF03602.10 183 0.00086 11.6 0.2 1 2 0.00087 0.089 5.1 0.1 112 126 18 32 2 43 0.79 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_75 - 215 Cons_hypoth95 PF03602.10 183 0.00086 11.6 0.2 2 2 0.0017 0.18 4.1 0.0 45 57 166 178 151 182 0.80 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_18 - 1948 AAA_19 PF13245.1 76 1.3e-05 17.8 1.4 1 1 6.6e-07 6.7e-05 15.6 0.1 9 60 1070 1121 1062 1133 0.75 # 15413 # 21256 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_39 - 882 AAA_10 PF12846.2 304 1.9e-50 164.9 0.0 1 1 6e-52 3.1e-50 164.2 0.0 1 294 485 777 485 783 0.89 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_19 - 868 AAA_10 PF12846.2 304 7.3e-13 41.5 0.0 1 1 4.9e-14 2.5e-12 39.7 0.0 5 300 197 505 194 508 0.77 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_19 - 868 DUF815 PF05673.8 250 0.00082 11.2 0.0 1 1 1.5e-05 0.0015 10.4 0.0 39 81 179 221 163 257 0.86 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_19 - 868 TrwB_AAD_bind PF10412.4 386 2.4e-141 463.7 0.0 1 1 5.8e-143 2.9e-141 463.4 0.0 2 386 180 568 179 568 0.99 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_39 - 882 TrwB_AAD_bind PF10412.4 386 7e-05 14.4 0.0 1 1 2.8e-06 0.00014 13.5 0.0 15 61 485 530 475 556 0.79 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_18 - 1948 AAA_11 PF13086.1 236 2e-05 17.2 0.0 1 2 0.002 0.2 4.1 0.0 5 41 1058 1095 1054 1148 0.72 # 15413 # 21256 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_18 - 1948 AAA_11 PF13086.1 236 2e-05 17.2 0.0 2 2 2.8e-05 0.0029 10.1 0.0 196 230 1153 1190 1142 1191 0.80 # 15413 # 21256 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.577 1_19 - 868 T4SS-DNA_transf PF02534.9 469 7.7e-16 50.5 0.0 1 1 2.5e-17 2.5e-15 48.9 0.0 217 455 338 578 250 589 0.83 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_42 - 178 TIGR00922 TIGR00922 172 4.8e-13 41.9 0.0 1 1 3e-14 3e-12 39.3 0.0 1 164 4 156 4 162 0.83 # 43646 # 44179 # -1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.466 1_19 - 868 NACHT PF05729.7 166 0.00014 14.4 0.1 1 3 0.00011 0.0056 9.3 0.0 4 28 197 221 195 226 0.88 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_19 - 868 NACHT PF05729.7 166 0.00014 14.4 0.1 2 3 0.072 3.6 0.1 0.0 100 156 366 425 355 432 0.69 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_19 - 868 NACHT PF05729.7 166 0.00014 14.4 0.1 3 3 0.036 1.8 1.1 0.0 78 99 422 443 377 453 0.71 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 1_39 - 882 NACHT PF05729.7 166 0.00032 13.3 0.5 1 2 0.004 0.21 4.2 0.0 102 137 73 110 64 130 0.77 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_39 - 882 NACHT PF05729.7 166 0.00032 13.3 0.5 2 2 0.00075 0.038 6.6 0.2 3 24 488 509 487 516 0.87 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_39 - 882 AAA_25 PF13481.1 194 0.00017 13.9 0.0 1 2 5e-05 0.0051 9.1 0.0 36 80 488 540 483 545 0.75 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_39 - 882 AAA_25 PF13481.1 194 0.00017 13.9 0.0 2 2 0.01 1.1 1.6 0.0 143 188 696 738 633 742 0.75 # 39695 # 42340 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_75 - 215 Methyltransf_15 PF09445.5 164 0.0012 11.3 0.0 1 2 0.047 4.8 -0.4 0.0 53 79 4 29 3 33 0.90 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_75 - 215 Methyltransf_15 PF09445.5 164 0.0012 11.3 0.0 2 2 6.6e-05 0.0067 8.9 0.0 3 30 166 193 164 202 0.89 # 68405 # 69049 # -1 # ID=1_75;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_19 - 868 AAA_28 PF13521.1 163 0.00067 12.6 0.1 1 1 5e-05 0.0051 9.7 0.0 4 45 198 244 195 265 0.77 # 21253 # 23856 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.568 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/13e73e31-4634-40d0-9e4c-2d1623335410 # Target file: checkm_output/bins/pm976/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm976/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/13e73e31-4634-40d0-9e4c-2d1623335410 checkm_output/bins/pm976/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:46 2020 # [ok]