# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_16 - 188 Methyltransf_12 PF08242.7 99 1.1e-05 18.8 0.0 1 1 2e-07 1.9e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_6 - 228 UPF0020 PF01170.13 180 6.6e-06 18.6 0.0 1 2 0.00033 0.015 7.6 0.0 104 119 18 33 7 88 0.73 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 UPF0020 PF01170.13 180 6.6e-06 18.6 0.0 2 2 0.00012 0.0058 9.0 0.0 28 54 163 189 158 221 0.67 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_16 - 188 UPF0020 PF01170.13 180 0.00099 11.5 0.0 1 1 7.6e-05 0.0036 9.7 0.0 19 43 41 65 35 130 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 RrnaAD PF00398.15 262 2e-08 26.4 0.0 1 1 2.7e-10 2.5e-08 26.0 0.0 9 113 29 128 24 148 0.87 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 4_8 - 176 SSB PF00436.20 104 2.2e-41 132.8 0.4 1 1 3.4e-43 3.2e-41 132.3 0.4 1 101 6 109 6 112 0.96 # 4473 # 5000 # -1 # ID=4_8;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 2_16 - 188 Methyltransf_18 PF12847.2 112 2.8e-10 33.6 0.0 1 1 6.3e-12 5.9e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_7 - 1757 UvrD_C_2 PF13538.1 104 1e-07 24.9 1.0 1 2 0.013 1.2 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 UvrD_C_2 PF13538.1 104 1e-07 24.9 1.0 2 2 3.6e-08 3.3e-06 20.0 0.2 3 102 1341 1444 1339 1446 0.76 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_29 - 876 DUF87 PF01935.12 229 2.2e-07 23.7 0.0 1 1 6.7e-09 6.3e-07 22.2 0.0 26 221 482 668 468 676 0.75 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_6 - 228 N6_N4_Mtase PF01555.13 231 6.2e-37 120.1 0.0 1 2 1.3e-15 1.2e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 N6_N4_Mtase PF01555.13 231 6.2e-37 120.1 0.0 2 2 5.4e-25 5.1e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_8 - 739 AAA_17 PF13207.1 121 0.0003 14.4 0.0 1 1 1.2e-05 0.0011 12.6 0.0 3 27 189 217 187 262 0.68 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 MobB PF03205.9 140 0.00064 12.3 0.1 1 1 2.7e-05 0.0025 10.3 0.0 4 37 483 515 481 523 0.79 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_38 - 122 CTP_transf_2 PF01467.21 157 0.00022 14.2 0.0 1 1 2.5e-06 0.00023 14.0 0.0 31 112 6 87 1 100 0.74 # 34248 # 34613 # -1 # ID=1_38;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_8 - 739 Zeta_toxin PF06414.7 201 0.00074 11.4 0.0 1 1 3.5e-05 0.0033 9.3 0.0 21 49 190 219 182 236 0.85 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_8 - 739 AAA_16 PF13191.1 185 4.1e-06 19.7 0.0 1 1 2e-07 1.9e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_16 - 188 Methyltransf_25 PF13649.1 101 0.00011 15.4 0.0 1 1 1.7e-06 0.00016 14.9 0.0 1 101 54 142 54 142 0.81 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_8 - 739 TraG-D_C PF12696.2 128 7.3e-21 67.2 0.0 1 1 1.4e-22 1.3e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_16 - 188 Methyltransf_26 PF13659.1 117 2.5e-14 46.2 0.0 1 1 9e-16 4.2e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_6 - 228 Methyltransf_26 PF13659.1 117 1.4e-12 40.6 0.1 1 2 7e-08 3.3e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Methyltransf_26 PF13659.1 117 1.4e-12 40.6 0.1 2 2 1.9e-07 9.1e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 5_6 - 252 FmrO PF07091.6 251 2e-82 268.7 0.0 1 1 2.4e-84 2.3e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 3758 # 4513 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_7 - 1757 AAA_30 PF13604.1 196 6.6e-45 145.9 12.8 1 3 0.083 3.9 -0.2 0.0 41 86 223 269 219 281 0.81 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 6.6e-45 145.9 12.8 2 3 1.1e-05 0.00052 12.4 2.6 7 142 420 547 416 571 0.81 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 6.6e-45 145.9 12.8 3 3 6.4e-44 3e-42 137.2 1.2 1 186 968 1156 968 1162 0.93 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 739 AAA_30 PF13604.1 196 0.00056 12.3 0.0 1 1 2.6e-05 0.0012 11.2 0.0 21 57 188 224 180 230 0.85 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.2 0.2 1 2 2e-06 0.00019 13.7 0.0 39 63 476 504 463 507 0.84 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 1.6e-05 17.2 0.2 2 2 0.018 1.7 0.9 0.0 75 166 530 625 529 634 0.75 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_16 - 188 MTS PF05175.9 170 8.2e-10 31.1 0.0 1 1 1.2e-11 1.1e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Methyltrans_SAM PF10672.4 286 0.00087 11.0 0.0 1 1 1.3e-05 0.0012 10.5 0.0 196 261 113 173 100 180 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_16 - 188 Met_10 PF02475.11 200 0.00042 12.7 0.0 1 1 5.7e-06 0.00054 12.4 0.0 98 189 47 132 29 145 0.79 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_29 - 876 ABC_tran PF00005.22 137 0.00096 12.3 0.0 1 1 2.9e-05 0.0027 10.8 0.0 13 102 481 610 476 619 0.60 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_6 - 228 Cons_hypoth95 PF03602.10 183 9.8e-06 17.9 0.0 1 2 0.00032 0.03 6.5 0.0 113 146 19 54 5 81 0.66 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Cons_hypoth95 PF03602.10 183 9.8e-06 17.9 0.0 2 2 4e-05 0.0038 9.4 0.0 41 62 162 183 145 218 0.78 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_7 - 1757 AAA_19 PF13245.1 76 4.6e-08 25.6 1.3 1 1 2.8e-09 2.6e-07 23.2 0.3 5 76 979 1047 974 1047 0.74 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_29 - 876 AAA_10 PF12846.2 304 1.3e-49 162.0 0.0 1 1 4.7e-51 2.2e-49 161.3 0.0 1 294 479 768 479 774 0.89 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 739 AAA_10 PF12846.2 304 1.3e-10 33.9 0.0 1 1 5e-11 2.3e-09 29.8 0.0 3 296 187 494 186 500 0.68 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 2_16 - 188 Methyltransf_31 PF13847.1 152 5.8e-07 22.0 0.0 1 1 7.6e-09 7.2e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00021 13.6 0.1 1 2 0.00031 0.029 6.6 0.0 1 23 988 1011 988 1191 0.78 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00021 13.6 0.1 2 2 0.0021 0.2 3.9 0.1 159 234 1370 1447 1341 1447 0.63 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 739 TrwB_AAD_bind PF10412.4 386 2.5e-150 493.1 0.0 1 1 6.5e-152 3e-150 492.9 0.0 2 386 172 561 171 561 0.99 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 TrwB_AAD_bind PF10412.4 386 8e-07 20.7 0.3 1 1 4.8e-08 2.2e-06 19.3 0.0 15 53 479 517 470 547 0.80 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_7 - 1757 AAA_11 PF13086.1 236 8.4e-05 15.0 1.9 1 2 3.9e-06 0.00036 12.9 0.0 2 75 969 1039 968 1060 0.81 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_11 PF13086.1 236 8.4e-05 15.0 1.9 2 2 0.096 9 -1.5 1.5 62 123 1684 1744 1642 1753 0.46 # 3703 # 8973 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 739 T4SS-DNA_transf PF02534.9 469 4.3e-10 31.5 0.0 1 1 2.1e-11 9.6e-10 30.3 0.0 250 362 362 477 198 501 0.76 # 8973 # 11189 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 1_29 - 876 T4SS-DNA_transf PF02534.9 469 3.5e-06 18.6 0.1 1 2 0.00023 0.011 7.1 0.0 105 186 533 608 475 623 0.88 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 T4SS-DNA_transf PF02534.9 469 3.5e-06 18.6 0.1 2 2 5.1e-05 0.0024 9.2 0.1 319 378 711 769 665 771 0.92 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_16 - 188 TIGR00755 TIGR00755 256 6.7e-09 27.9 0.0 1 1 9.5e-11 8.9e-09 27.4 0.0 8 105 29 123 25 134 0.90 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 2_6 - 228 MethyltransfD12 PF02086.10 260 0.00053 12.3 0.0 1 2 0.022 2.1 0.5 0.0 178 188 21 31 14 91 0.83 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 MethyltransfD12 PF02086.10 260 0.00053 12.3 0.0 2 2 4e-05 0.0038 9.5 0.0 20 46 163 189 148 197 0.78 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 1_29 - 876 Pox_A32 PF04665.7 241 0.00062 11.9 0.0 1 1 1.8e-05 0.0017 10.4 0.0 6 38 472 504 469 519 0.85 # 26510 # 29137 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 2_16 - 188 Methyltransf_23 PF13489.1 161 5.7e-05 15.7 0.0 1 1 1.6e-06 7.3e-05 15.3 0.0 9 120 38 153 27 174 0.78 # 12993 # 13556 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.582 5_6 - 252 Methyltransf_23 PF13489.1 161 0.00034 13.2 0.0 1 1 1.1e-05 0.0005 12.6 0.0 7 52 89 132 82 198 0.78 # 3758 # 4513 # 1 # ID=5_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 2_6 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.3 0.0 1 2 0.012 1.2 1.5 0.0 53 79 4 29 2 33 0.91 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 2_6 - 228 Methyltransf_15 PF09445.5 164 0.00027 13.3 0.0 2 2 4.2e-05 0.004 9.5 0.0 3 31 166 194 164 209 0.86 # 4242 # 4925 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.579 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7641beb7-7ec3-48d9-86ca-57bdc2cb1e42 # Target file: checkm_output/bins/pm973/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm973/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7641beb7-7ec3-48d9-86ca-57bdc2cb1e42 checkm_output/bins/pm973/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:41 2020 # [ok]