# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 516 cobW PF02492.14 178 6.5e-05 14.8 0.0 1 1 1.8e-06 0.00012 13.9 0.0 2 37 237 275 236 322 0.90 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_11 - 213 MipZ PF09140.6 261 2.1e-10 32.4 0.2 1 2 5.9e-11 3.9e-09 28.2 0.1 3 135 3 119 1 134 0.76 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 1_11 - 213 MipZ PF09140.6 261 2.1e-10 32.4 0.2 2 2 0.028 1.8 -0.2 0.0 212 229 174 191 143 206 0.61 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_9 - 389 AAA_22 PF13401.1 131 1e-05 18.0 0.1 1 1 1.4e-06 4.6e-05 15.9 0.0 3 26 156 179 151 225 0.85 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_1 - 660 AAA_22 PF13401.1 131 0.00026 13.5 0.3 1 1 0.00016 0.0054 9.2 0.0 8 24 146 162 139 214 0.86 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 3_2 - 516 ATP_bind_1 PF03029.12 238 1.1e-05 17.3 0.5 1 2 0.024 0.8 1.5 0.1 152 201 36 99 31 120 0.71 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 ATP_bind_1 PF03029.12 238 1.1e-05 17.3 0.5 2 2 4.5e-06 0.00015 13.7 0.0 2 23 241 262 240 272 0.87 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 ATP_bind_1 PF03029.12 238 0.0005 12.0 0.0 1 1 2.4e-05 0.00079 11.3 0.0 1 22 162 183 162 194 0.89 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 213 SRP54 PF00448.17 196 0.00058 11.7 0.2 1 1 1.1e-05 0.00074 11.3 0.2 11 44 11 43 2 153 0.87 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 3_2 - 516 AAA_17 PF13207.1 121 4.2e-06 20.0 0.0 1 1 2.3e-07 1.5e-05 18.1 0.0 1 23 237 259 237 356 0.76 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 AAA_21 PF13304.1 303 0.0003 13.1 0.0 1 1 7.1e-06 0.00048 12.4 0.0 5 39 163 199 162 222 0.69 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 389 Miro PF08477.8 119 0.00032 13.5 0.0 1 1 1.6e-05 0.0011 11.8 0.0 2 20 160 178 160 206 0.84 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 389 MobB PF03205.9 140 0.00037 12.5 0.0 1 1 9.8e-06 0.00065 11.8 0.0 3 24 160 181 158 189 0.89 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 213 ArsA_ATPase PF02374.10 305 3.3e-07 21.9 0.2 1 1 7.9e-09 5.3e-07 21.2 0.2 1 42 1 41 1 46 0.88 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 3_2 - 516 T2SE PF00437.15 272 3.4e-38 123.4 0.2 1 2 0.00052 0.012 6.8 0.1 75 128 57 110 48 112 0.92 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 T2SE PF00437.15 272 3.4e-38 123.4 0.2 2 2 5e-38 1.1e-36 118.4 0.0 5 269 104 373 101 376 0.85 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 T2SE PF00437.15 272 2e-37 120.9 0.0 1 1 1.3e-38 2.8e-37 120.4 0.0 7 270 25 307 20 309 0.84 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_1 - 660 T2SE PF00437.15 272 0.00015 13.0 0.0 1 1 1.4e-05 0.00031 12.0 0.0 112 152 126 166 81 174 0.76 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 2_9 - 389 SMC_N PF02463.14 220 0.00062 11.3 0.0 1 1 1.7e-05 0.0011 10.5 0.0 22 45 155 178 146 188 0.86 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 213 VirC1 PF07015.6 231 1.4e-05 16.6 0.1 1 1 2.8e-07 1.9e-05 16.1 0.1 5 182 4 180 1 199 0.71 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 3_2 - 516 Arch_ATPase PF01637.13 234 0.00013 14.0 0.1 1 1 4.7e-06 0.00031 12.8 0.0 12 46 227 261 224 302 0.81 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 AAA_16 PF13191.1 185 3.5e-07 22.7 0.0 1 1 3.1e-08 7e-07 21.7 0.0 15 131 226 354 223 410 0.63 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 AAA_16 PF13191.1 185 6.2e-05 15.4 0.1 1 2 3.1e-05 0.00069 11.9 0.0 25 48 158 181 136 201 0.86 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 389 AAA_16 PF13191.1 185 6.2e-05 15.4 0.1 2 2 0.089 2 0.7 0.2 74 97 321 344 286 384 0.68 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_1 - 660 AAA_16 PF13191.1 185 0.00016 14.1 0.4 1 1 3.4e-05 0.00077 11.8 0.4 27 46 145 164 134 502 0.94 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 2_9 - 389 AAA_23 PF13476.1 202 9.2e-08 24.9 0.1 1 1 7.5e-09 2.5e-07 23.5 0.0 17 43 153 181 139 214 0.84 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_2 - 516 AAA_23 PF13476.1 202 0.00011 14.8 0.5 1 1 1.3e-05 0.00044 12.9 0.0 20 42 236 258 226 270 0.84 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 AAA_18 PF13238.1 129 3.2e-07 23.1 0.1 1 1 2.8e-08 9.3e-07 21.6 0.0 1 67 238 317 238 357 0.71 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 AAA_18 PF13238.1 129 0.00068 12.3 0.0 1 1 4.9e-05 0.0016 11.1 0.0 1 22 160 181 160 211 0.80 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 213 CbiA PF01656.18 195 1.5e-20 65.7 0.1 1 1 4.4e-22 2.9e-20 64.8 0.1 1 192 3 179 3 182 0.76 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 2_9 - 389 KaiC PF06745.8 227 0.00045 11.7 0.0 1 1 1.3e-05 0.0009 10.7 0.0 10 59 148 196 133 231 0.76 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_2 - 516 AAA_14 PF13173.1 128 6.5e-05 15.2 0.0 1 2 8.4e-05 0.0056 8.9 0.0 3 27 236 259 234 280 0.81 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 AAA_14 PF13173.1 128 6.5e-05 15.2 0.0 2 2 0.0033 0.22 3.8 0.0 74 109 291 324 282 338 0.81 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 AAA_29 PF13555.1 62 3.5e-07 22.1 0.0 1 1 4e-08 8.8e-07 20.8 0.0 21 50 234 262 227 269 0.86 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 AAA_29 PF13555.1 62 3.9e-06 18.7 0.0 1 1 4.4e-07 9.8e-06 17.5 0.0 26 43 160 177 151 183 0.86 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_1 - 660 AAA_29 PF13555.1 62 0.00035 12.5 0.0 1 1 3.5e-05 0.00078 11.4 0.0 25 51 144 170 125 178 0.81 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_13 - 87 AAA_8 PF12780.2 268 0.00031 12.1 0.2 1 1 5.6e-06 0.00038 11.8 0.2 58 92 42 76 33 84 0.90 # 11881 # 12141 # -1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.307 1_19 - 328 TraG-D_C PF12696.2 128 3.7e-06 19.2 0.1 1 1 8.7e-08 5.8e-06 18.6 0.1 4 127 59 178 56 179 0.75 # 17186 # 18169 # -1 # ID=1_19;partial=00;start_type=TTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.464 1_11 - 213 AAA_31 PF13614.1 157 4e-06 19.2 0.1 1 1 1.4e-07 9.4e-06 18.0 0.1 4 39 4 38 2 43 0.88 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 3_2 - 516 NTPase_1 PF03266.10 168 4.3e-05 15.6 0.2 1 1 2e-06 0.00014 14.0 0.0 2 25 238 261 237 270 0.88 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 AAA_33 PF13671.1 143 7.8e-05 14.9 0.1 1 1 9e-06 0.0003 13.0 0.0 1 20 237 256 237 351 0.69 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 AAA_33 PF13671.1 143 8.8e-05 14.8 0.1 1 2 1.9e-05 0.00064 12.0 0.0 1 24 159 182 159 237 0.88 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 389 AAA_33 PF13671.1 143 8.8e-05 14.8 0.1 2 2 0.083 2.8 0.2 0.2 40 69 327 355 290 362 0.68 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_2 - 516 AAA_30 PF13604.1 196 7e-07 21.3 0.0 1 1 1.7e-08 1.1e-06 20.6 0.0 2 53 219 270 218 286 0.88 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 ABC_tran PF00005.22 137 1e-05 18.2 0.0 1 1 1.1e-06 2.4e-05 17.0 0.0 13 33 159 179 153 225 0.83 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_2 - 516 ABC_tran PF00005.22 137 1.1e-05 18.0 0.0 1 1 1.3e-06 2.8e-05 16.8 0.0 13 44 237 268 231 299 0.84 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 4_1 - 660 ABC_tran PF00005.22 137 0.00053 12.7 0.0 1 1 7.9e-05 0.0018 11.0 0.0 15 36 146 167 135 219 0.86 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_5 - 591 DNA_mis_repair PF01119.14 119 1.1e-35 114.1 0.0 1 1 2.7e-37 1.8e-35 113.4 0.0 3 118 214 328 212 329 0.96 # 3194 # 4966 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.438 3_2 - 516 AAA_19 PF13245.1 76 2.6e-06 19.5 0.0 1 1 3.1e-07 7e-06 18.1 0.0 2 39 226 263 225 273 0.80 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 4_1 - 660 AAA_19 PF13245.1 76 1.5e-05 17.1 0.0 1 1 9.4e-06 0.00021 13.4 0.0 13 35 146 166 134 187 0.82 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_11 - 213 AAA_19 PF13245.1 76 0.00015 13.9 0.0 1 1 1.6e-05 0.00036 12.6 0.0 11 35 2 26 1 58 0.84 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 4_1 - 660 AAA_10 PF12846.2 304 1.5e-47 154.8 0.0 1 1 1.2e-48 1.9e-47 154.4 0.0 5 302 146 539 142 541 0.95 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 3_2 - 516 AAA_10 PF12846.2 304 1.3e-05 17.0 0.0 1 1 1.3e-06 2.1e-05 16.4 0.0 3 30 237 264 235 413 0.93 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 AAA_10 PF12846.2 304 2.8e-05 15.9 0.1 1 1 9.9e-06 0.00017 13.4 0.0 3 26 159 184 157 199 0.73 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_21 - 416 AAA_10 PF12846.2 304 6.9e-05 14.7 0.0 1 1 6.3e-06 0.00011 14.1 0.0 3 192 141 396 140 409 0.70 # 20422 # 21669 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 4_1 - 660 DUF2075 PF09848.4 352 0.00051 11.4 0.0 1 1 1.6e-05 0.001 10.3 0.0 5 22 146 162 142 179 0.76 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 1_21 - 416 TrwB_AAD_bind PF10412.4 386 1e-05 16.6 0.0 1 2 3.2e-05 0.0021 9.0 0.0 12 35 136 159 127 181 0.81 # 20422 # 21669 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 1_21 - 416 TrwB_AAD_bind PF10412.4 386 1e-05 16.6 0.0 2 2 0.00035 0.023 5.5 0.0 93 141 241 288 225 312 0.82 # 20422 # 21669 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 3_2 - 516 Sigma54_activ_2 PF14532.1 138 0.00041 12.8 0.0 1 1 1.3e-05 0.0009 11.7 0.0 17 47 231 261 224 300 0.71 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 AAA_PrkA PF08298.6 358 0.00029 11.9 0.0 1 1 9.8e-06 0.00065 10.7 0.0 90 116 237 264 227 288 0.79 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 1_21 - 416 T4SS-DNA_transf PF02534.9 469 5.6e-08 24.0 0.0 1 1 1.1e-09 7.5e-08 23.6 0.0 34 171 128 280 103 326 0.76 # 20422 # 21669 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.502 3_2 - 516 PIF1 PF05970.9 364 0.00016 13.0 0.0 1 1 5.2e-06 0.00035 11.9 0.0 11 50 224 263 218 271 0.83 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 GTP_EFTU PF00009.22 188 0.00076 11.3 0.0 1 1 2e-05 0.0013 10.5 0.0 6 32 160 186 157 198 0.87 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 1_11 - 213 Gtr1_RagA PF04670.7 232 0.00018 13.0 0.0 1 1 4.5e-06 0.0003 12.3 0.0 93 133 120 160 108 190 0.82 # 10560 # 11198 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.396 3_2 - 516 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.0 1 2 1.4e-05 0.00047 12.7 0.0 1 47 238 297 238 333 0.85 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 RNA_helicase PF00910.17 107 1.3e-05 17.7 0.0 2 2 0.025 0.82 2.3 0.0 38 90 435 485 424 493 0.80 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 RNA_helicase PF00910.17 107 0.00014 14.4 0.0 1 1 2.3e-05 0.00077 12.0 0.0 1 20 160 179 160 196 0.84 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 389 NACHT PF05729.7 166 3.5e-05 15.8 0.0 1 1 3e-06 6.7e-05 14.9 0.0 2 23 159 180 158 193 0.85 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 4_1 - 660 NACHT PF05729.7 166 0.00015 13.8 0.0 1 2 0.00018 0.0041 9.1 0.0 4 38 146 176 144 215 0.70 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 4_1 - 660 NACHT PF05729.7 166 0.00015 13.8 0.0 2 2 0.048 1.1 1.2 0.0 31 63 473 505 456 512 0.79 # 1 # 1980 # 1 # ID=4_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.530 3_2 - 516 NACHT PF05729.7 166 0.00053 12.0 0.0 1 1 4.7e-05 0.0011 11.0 0.0 2 27 237 262 236 268 0.85 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 2_9 - 389 AAA_25 PF13481.1 194 5.5e-06 18.2 0.1 1 2 3.6e-07 2.4e-05 16.1 0.0 25 53 149 177 128 182 0.89 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 2_9 - 389 AAA_25 PF13481.1 194 5.5e-06 18.2 0.1 2 2 0.056 3.7 -0.8 0.0 65 108 263 311 247 361 0.62 # 5417 # 6583 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.527 3_2 - 516 AAA_5 PF07728.9 139 0.0002 13.4 0.0 1 1 6.6e-06 0.00044 12.3 0.0 3 48 239 286 237 323 0.71 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 3_2 - 516 APS_kinase PF01583.15 157 0.00022 13.2 0.0 1 1 7.4e-06 0.00049 12.1 0.0 4 28 237 261 234 272 0.82 # 487 # 2034 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.494 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3594fa8d-b4a1-47d3-9377-41afee701631 # Target file: checkm_output/bins/pm964/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm964/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3594fa8d-b4a1-47d3-9377-41afee701631 checkm_output/bins/pm964/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:37 2020 # [ok]