# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_20 - 488 Mg_chelatase PF01078.16 207 0.00082 12.0 0.1 1 1 1.1e-05 0.0016 11.0 0.1 1 47 215 267 215 281 0.79 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_50 - 372 ATP_bind_3 PF01171.15 182 0.00021 14.2 0.0 1 2 5.1e-05 0.0073 9.2 0.0 1 59 52 110 52 132 0.78 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_50 - 372 ATP_bind_3 PF01171.15 182 0.00021 14.2 0.0 2 2 0.005 0.72 2.7 0.0 134 161 232 260 207 262 0.72 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_5 - 332 cobW PF02492.14 178 3.1e-06 20.1 0.0 1 1 8.2e-08 5.8e-06 19.2 0.0 3 45 161 202 159 257 0.77 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 cobW PF02492.14 178 0.0012 11.7 0.0 1 1 2.6e-05 0.0019 11.1 0.0 2 22 2 22 1 30 0.79 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 Parvo_NS1 PF01057.12 272 0.0012 11.1 0.0 1 1 1.4e-05 0.002 10.4 0.0 104 138 148 182 140 188 0.90 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_26 - 292 Seryl_tRNA_N PF02403.17 108 0.013 9.0 13.5 1 4 0.04 2.8 1.4 0.1 57 104 11 59 2 63 0.69 # 25316 # 26191 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_26 - 292 Seryl_tRNA_N PF02403.17 108 0.013 9.0 13.5 2 4 0.011 0.76 3.3 0.8 39 96 39 107 17 111 0.52 # 25316 # 26191 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_26 - 292 Seryl_tRNA_N PF02403.17 108 0.013 9.0 13.5 3 4 0.00097 0.069 6.6 0.1 27 59 90 122 75 144 0.84 # 25316 # 26191 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_26 - 292 Seryl_tRNA_N PF02403.17 108 0.013 9.0 13.5 4 4 0.00052 0.038 7.5 1.6 17 107 162 251 155 252 0.76 # 25316 # 26191 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_18 - 347 Seryl_tRNA_N PF02403.17 108 0.037 7.5 46.3 1 5 0.038 2.7 1.5 8.8 39 98 89 152 77 158 0.72 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_18 - 347 Seryl_tRNA_N PF02403.17 108 0.037 7.5 46.3 2 5 0.0017 0.12 5.9 3.1 50 100 146 196 143 199 0.89 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_18 - 347 Seryl_tRNA_N PF02403.17 108 0.037 7.5 46.3 3 5 5.2e-06 0.00037 13.9 12.2 19 100 216 294 201 297 0.85 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_18 - 347 Seryl_tRNA_N PF02403.17 108 0.037 7.5 46.3 4 5 0.00061 0.044 7.3 2.1 62 105 284 327 282 330 0.90 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_18 - 347 Seryl_tRNA_N PF02403.17 108 0.037 7.5 46.3 5 5 0.012 0.84 3.1 1.6 82 105 304 327 296 345 0.51 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 2_5 - 332 IstB_IS21 PF01695.12 178 4e-05 16.5 0.0 1 1 4.5e-07 6.4e-05 15.8 0.0 44 73 155 184 127 201 0.82 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_63 - 262 MipZ PF09140.6 261 2.6e-10 33.2 0.0 1 2 6.6e-10 9.4e-08 24.8 0.0 2 52 4 55 3 81 0.83 # 50787 # 51572 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_63 - 262 MipZ PF09140.6 261 2.6e-10 33.2 0.0 2 2 0.00031 0.045 6.2 0.0 89 122 117 150 89 166 0.74 # 50787 # 51572 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_16 - 504 UvrD_C_2 PF13538.1 104 1.1e-10 35.0 0.0 1 1 3.5e-12 5e-10 32.9 0.0 46 99 393 463 352 467 0.67 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_20 - 488 AAA_2 PF07724.9 171 5e-06 19.9 0.0 1 1 3.9e-07 2.8e-05 17.5 0.0 6 92 245 325 240 333 0.90 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_5 - 332 AAA_2 PF07724.9 171 8.2e-06 19.2 0.0 1 1 2.1e-07 1.5e-05 18.4 0.0 3 54 158 204 156 216 0.89 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 DUF87 PF01935.12 229 3.8e-06 20.3 0.0 1 1 4.8e-08 6.9e-06 19.4 0.0 9 61 144 195 138 196 0.78 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_22 PF13401.1 131 3.9e-07 23.7 0.0 1 1 2.4e-08 8.7e-07 22.6 0.0 3 54 157 202 153 241 0.74 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 AAA_22 PF13401.1 131 2.4e-05 17.9 0.0 1 1 1.3e-06 4.7e-05 17.0 0.0 6 37 2 34 1 177 0.84 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 1_16 - 504 AAA_22 PF13401.1 131 4.7e-05 17.0 0.0 1 2 0.00011 0.0038 10.8 0.0 8 68 23 92 17 122 0.63 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_16 - 504 AAA_22 PF13401.1 131 4.7e-05 17.0 0.0 2 2 0.02 0.71 3.4 0.0 82 124 189 225 164 229 0.77 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_20 - 488 AAA_22 PF13401.1 131 0.00068 13.2 1.1 1 1 0.0012 0.042 7.4 0.8 69 121 283 344 243 354 0.66 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 4_3 - 181 AAA_17 PF13207.1 121 8.7e-07 23.2 0.1 1 1 3.5e-08 1.7e-06 22.3 0.1 1 77 2 94 2 173 0.54 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_20 - 488 AAA_17 PF13207.1 121 0.00018 15.8 0.0 1 1 1.9e-05 0.0009 13.5 0.0 2 63 245 299 245 388 0.63 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_5 - 332 AAA_17 PF13207.1 121 0.00057 14.1 0.1 1 1 2.8e-05 0.0014 12.9 0.1 2 40 161 195 160 229 0.75 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 MobB PF03205.9 140 1.3e-05 18.4 1.9 1 1 1.5e-07 2.1e-05 17.6 0.3 2 39 160 196 159 201 0.83 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_63 - 262 ArsA_ATPase PF02374.10 305 8.2e-06 18.4 0.0 1 2 3e-07 4.3e-05 16.0 0.0 7 40 9 43 2 79 0.84 # 50787 # 51572 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_63 - 262 ArsA_ATPase PF02374.10 305 8.2e-06 18.4 0.0 2 2 0.029 4.1 -0.3 0.0 124 136 124 136 106 143 0.79 # 50787 # 51572 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 1_16 - 504 PhoH PF02562.11 205 3.7e-06 19.7 0.2 1 2 0.0026 0.19 4.3 0.0 22 45 22 45 4 61 0.78 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_16 - 504 PhoH PF02562.11 205 3.7e-06 19.7 0.2 2 2 1.5e-05 0.0011 11.7 0.0 122 168 196 240 193 255 0.83 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_5 - 332 PhoH PF02562.11 205 0.00044 12.9 0.0 1 1 1.1e-05 0.0008 12.1 0.0 14 45 153 184 143 210 0.79 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_7 PF12775.2 272 0.00014 14.4 0.0 1 1 2.3e-06 0.00033 13.2 0.0 25 64 150 189 139 209 0.86 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 T2SE PF00437.15 272 4.5e-52 170.0 0.1 1 1 3.7e-54 5.3e-52 169.7 0.1 3 271 10 311 8 312 0.94 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00066 13.0 0.0 1 2 6.6e-05 0.0094 9.3 0.0 1 23 2 24 2 46 0.78 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 Cytidylate_kin2 PF13189.1 179 0.00066 13.0 0.0 2 2 0.015 2.1 1.6 0.0 112 135 99 122 91 136 0.77 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 Zeta_toxin PF06414.7 201 2.2e-06 20.3 0.0 1 1 8e-08 3.8e-06 19.5 0.0 12 51 154 193 145 204 0.86 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 Zeta_toxin PF06414.7 201 6.5e-05 15.5 0.0 1 2 1.4e-05 0.00067 12.2 0.0 19 53 3 35 1 120 0.83 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 Zeta_toxin PF06414.7 201 6.5e-05 15.5 0.0 2 2 0.071 3.4 0.1 0.0 45 74 106 133 95 150 0.73 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_20 - 488 Zeta_toxin PF06414.7 201 0.00024 13.6 0.0 1 1 9.4e-06 0.00045 12.7 0.0 18 52 244 277 239 314 0.90 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_50 - 372 TIGR02432 TIGR02432 189 5.7e-05 16.2 0.1 1 2 1.1e-05 0.0015 11.6 0.0 1 58 52 109 52 120 0.85 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_50 - 372 TIGR02432 TIGR02432 189 5.7e-05 16.2 0.1 2 2 0.0084 1.2 2.1 0.0 140 165 235 260 207 262 0.76 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_5 - 332 Arch_ATPase PF01637.13 234 1.2e-05 18.4 0.0 1 1 1.6e-07 2.3e-05 17.6 0.0 15 68 155 205 149 226 0.87 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_16 PF13191.1 185 9.7e-07 22.3 0.0 1 1 1.7e-08 2.5e-06 21.0 0.0 24 61 158 195 149 274 0.82 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_23 PF13476.1 202 0.00064 13.5 0.0 1 1 7.2e-06 0.001 12.8 0.0 19 39 158 178 105 184 0.91 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 AAA_18 PF13238.1 129 9.6e-11 35.5 0.0 1 1 2.4e-12 1.7e-10 34.7 0.0 1 126 3 134 3 137 0.71 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 AAA_18 PF13238.1 129 6.7e-06 19.9 0.0 1 1 2e-07 1.4e-05 18.8 0.0 1 29 161 194 161 213 0.77 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_26 - 292 AAA_13 PF13166.1 712 0.0012 10.7 18.3 1 2 4.3e-05 0.003 9.4 3.4 365 471 17 125 5 133 0.60 # 25316 # 26191 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_26 - 292 AAA_13 PF13166.1 712 0.0012 10.7 18.3 2 2 0.00021 0.015 7.1 7.2 322 439 158 285 138 291 0.75 # 25316 # 26191 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-12bp;gc_cont=0.501 1_18 - 347 AAA_13 PF13166.1 712 0.0096 7.7 36.6 1 2 0.0038 0.27 2.9 28.3 283 457 85 259 71 272 0.58 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_18 - 347 AAA_13 PF13166.1 712 0.0096 7.7 36.6 2 2 4.7e-05 0.0034 9.2 23.2 287 474 160 339 154 345 0.78 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_63 - 262 CbiA PF01656.18 195 1.7e-30 99.3 0.0 1 1 1.5e-32 2.2e-30 98.9 0.0 1 170 5 205 5 229 0.77 # 50787 # 51572 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 2_5 - 332 KaiC PF06745.8 227 0.00024 13.6 0.0 1 1 3e-06 0.00043 12.8 0.0 16 53 155 190 148 240 0.77 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_16 - 504 AAA_14 PF13173.1 128 2.3e-05 17.7 1.3 1 2 7.6e-05 0.0036 10.6 0.1 11 46 28 62 18 156 0.76 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_16 - 504 AAA_14 PF13173.1 128 2.3e-05 17.7 1.3 2 2 0.0034 0.16 5.3 0.0 51 99 176 227 127 241 0.73 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_5 - 332 AAA_14 PF13173.1 128 0.00039 13.7 0.1 1 2 0.0067 0.32 4.3 0.0 64 96 135 165 98 166 0.69 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_14 PF13173.1 128 0.00039 13.7 0.1 2 2 9.5e-05 0.0045 10.3 0.0 2 35 158 191 157 213 0.80 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 AAA_14 PF13173.1 128 0.00085 12.7 0.0 1 1 3.4e-05 0.0016 11.7 0.0 4 27 2 25 1 54 0.79 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 GvpD PF07088.6 484 3.7e-06 18.9 0.0 1 1 3.9e-08 5.5e-06 18.3 0.0 10 89 158 241 150 262 0.76 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_29 PF13555.1 62 0.0014 11.6 0.0 1 1 2.3e-05 0.0033 10.4 0.0 19 43 157 178 145 188 0.75 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_20 - 488 AAA PF00004.24 132 3e-29 95.3 0.0 1 1 9.1e-31 1.3e-28 93.3 0.0 1 131 245 371 245 372 0.97 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_16 - 504 UvrD_C PF13361.1 351 1.3e-10 34.6 0.0 1 1 1.7e-12 2.5e-10 33.7 0.0 238 347 359 468 334 472 0.76 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_50 - 372 PAPS_reduct PF01507.14 174 5e-12 39.4 0.4 1 2 0.014 2 1.6 0.0 2 17 53 68 52 91 0.76 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_50 - 372 PAPS_reduct PF01507.14 174 5e-12 39.4 0.4 2 2 4.4e-13 6.3e-11 35.8 0.1 58 172 154 279 145 281 0.85 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_5 - 332 Sigma54_activat PF00158.21 168 1.2e-05 18.2 0.0 1 1 1.6e-07 2.2e-05 17.4 0.0 14 54 150 190 138 213 0.82 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 MMR_HSR1 PF01926.18 116 0.00062 13.2 0.0 1 1 7.1e-06 0.001 12.5 0.0 2 41 161 205 160 310 0.84 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_60 - 212 N6_Mtase PF02384.11 311 5.3e-07 22.3 0.0 1 1 5.9e-09 8.5e-07 21.7 0.0 3 97 71 166 69 201 0.72 # 48593 # 49228 # 1 # ID=1_60;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.522 2_5 - 332 DUF258 PF03193.11 161 0.00016 14.3 0.0 1 1 2e-06 0.00029 13.5 0.0 29 61 151 184 129 224 0.81 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_63 - 262 AAA_31 PF13614.1 157 1.9e-10 34.3 0.0 1 1 2.6e-12 3.8e-10 33.3 0.0 1 149 3 157 3 165 0.79 # 50787 # 51572 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 4_3 - 181 AAA_33 PF13671.1 143 8.2e-11 35.4 0.0 1 1 2.2e-12 1e-10 35.0 0.0 2 127 3 130 2 151 0.75 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_20 - 488 AAA_33 PF13671.1 143 0.0004 13.7 0.0 1 1 2.4e-05 0.0012 12.2 0.0 2 33 245 297 245 399 0.73 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_5 - 332 AAA_33 PF13671.1 143 0.00053 13.3 0.0 1 1 1.8e-05 0.00084 12.6 0.0 2 26 161 188 160 256 0.81 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 3_14 - 252 FmrO PF07091.6 251 3.1e-82 268.7 0.0 1 1 2.4e-84 3.5e-82 268.5 0.0 1 251 12 246 12 246 0.98 # 11926 # 12681 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 1_16 - 504 AAA_30 PF13604.1 196 7e-08 25.7 0.1 1 2 1.8e-06 0.00013 15.0 0.0 19 80 20 81 11 109 0.77 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_16 - 504 AAA_30 PF13604.1 196 7e-08 25.7 0.1 2 2 0.00035 0.025 7.5 0.0 115 133 211 229 174 278 0.75 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_5 - 332 AAA_30 PF13604.1 196 0.00022 14.3 0.1 1 2 4.7e-05 0.0034 10.4 0.1 11 51 151 190 145 197 0.80 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_30 PF13604.1 196 0.00022 14.3 0.1 2 2 0.024 1.7 1.6 0.0 121 178 204 258 191 272 0.77 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 FtsK_SpoIIIE PF01580.13 205 1.2e-06 21.5 0.0 1 1 1.7e-08 2.4e-06 20.5 0.0 38 64 158 184 139 191 0.81 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 ABC_tran PF00005.22 137 2.2e-06 21.4 0.0 1 1 2.5e-08 3.5e-06 20.8 0.0 6 45 153 192 150 257 0.87 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 TIGR03263 TIGR03263 180 0.001 11.8 0.0 1 1 1.6e-05 0.0023 10.7 0.0 3 26 2 25 1 31 0.81 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 ATP-synt_ab PF00006.20 215 0.00078 12.4 0.0 1 1 8.8e-06 0.0013 11.7 0.0 16 62 159 205 151 247 0.86 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_16 - 504 AAA_19 PF13245.1 76 2.2e-09 30.4 0.0 1 1 1.3e-10 6e-09 29.0 0.0 8 75 18 77 12 78 0.88 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 4_3 - 181 AAA_19 PF13245.1 76 0.00033 13.8 0.0 1 1 2.5e-05 0.0012 12.1 0.0 15 33 5 22 2 38 0.84 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 AAA_19 PF13245.1 76 0.00091 12.4 0.1 1 1 4.2e-05 0.002 11.3 0.1 5 48 153 191 149 224 0.78 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 AAA_10 PF12846.2 304 0.00038 13.3 0.0 1 1 4.1e-06 0.00059 12.7 0.0 3 29 160 185 158 233 0.81 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_16 - 504 ResIII PF04851.10 184 1.5e-06 21.5 0.0 1 1 5.5e-08 3.9e-06 20.2 0.0 23 75 17 69 7 107 0.78 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_5 - 332 ResIII PF04851.10 184 8.9e-06 19.0 0.0 1 1 2e-07 1.4e-05 18.4 0.0 22 61 148 196 104 202 0.81 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_18 - 347 DUF3584 PF12128.3 1201 0.024 5.3 51.1 1 2 0.0051 0.73 0.4 32.3 377 534 86 242 42 246 0.65 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_18 - 347 DUF3584 PF12128.3 1201 0.024 5.3 51.1 2 2 2e-05 0.0029 8.3 20.6 613 709 225 327 220 345 0.80 # 16010 # 17050 # -1 # ID=1_18;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.509 1_16 - 504 Viral_helicase1 PF01443.13 234 1.3e-10 34.6 0.0 1 3 1.4e-05 0.002 11.0 0.0 2 49 23 73 22 87 0.67 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_16 - 504 Viral_helicase1 PF01443.13 234 1.3e-10 34.6 0.0 2 3 1.8e-05 0.0026 10.7 0.0 56 105 188 234 146 256 0.78 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_16 - 504 Viral_helicase1 PF01443.13 234 1.3e-10 34.6 0.0 3 3 5.2e-05 0.0074 9.2 0.0 176 227 404 462 344 467 0.75 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_5 - 332 DUF2075 PF09848.4 352 0.00013 14.4 0.0 1 1 1.3e-06 0.00019 13.9 0.0 1 32 158 187 158 216 0.76 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 DEAD PF00270.24 169 4.2e-06 19.7 0.0 1 1 5.7e-08 8.1e-06 18.8 0.0 13 70 157 211 144 242 0.78 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_20 - 488 DUF815 PF05673.8 250 2.3e-06 20.1 0.0 1 1 5e-08 7.1e-06 18.5 0.0 19 154 208 353 194 365 0.75 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_5 - 332 TrwB_AAD_bind PF10412.4 386 2e-05 16.8 0.1 1 1 2.1e-07 3e-05 16.1 0.1 14 49 157 191 150 202 0.81 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_16 - 504 AAA_11 PF13086.1 236 4.1e-07 23.2 0.1 1 1 1.9e-08 2.7e-06 20.5 0.1 23 228 25 228 8 229 0.66 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 2_5 - 332 Sigma54_activ_2 PF14532.1 138 3.4e-06 20.6 0.0 1 1 5e-08 7.2e-06 19.5 0.0 14 65 151 202 145 212 0.92 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 Pox_A32 PF04665.7 241 0.00014 14.6 0.0 1 1 1.7e-06 0.00024 13.8 0.0 12 46 157 191 150 210 0.85 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 3_14 - 252 Methyltransf_23 PF13489.1 161 0.00052 13.2 0.0 1 1 5.3e-06 0.00076 12.6 0.0 7 52 89 132 82 198 0.78 # 11926 # 12681 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.567 2_50 - 372 tRNA_Me_trans PF03054.11 356 4.4e-05 15.5 0.0 1 2 9.4e-07 0.00013 13.9 0.0 2 75 52 126 51 144 0.74 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_50 - 372 tRNA_Me_trans PF03054.11 356 4.4e-05 15.5 0.0 2 2 0.042 5.9 -1.4 0.0 193 224 274 305 236 311 0.83 # 26179 # 27294 # 1 # ID=2_50;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.519 2_5 - 332 GTP_EFTU PF00009.22 188 0.00031 13.6 0.2 1 1 3.5e-06 0.0005 12.9 0.2 2 32 157 187 156 205 0.83 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 RNA_helicase PF00910.17 107 2.8e-05 17.7 0.1 1 2 7e-06 0.0005 13.7 0.0 1 25 161 185 161 242 0.75 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_5 - 332 RNA_helicase PF00910.17 107 2.8e-05 17.7 0.1 2 2 0.054 3.9 1.2 0.1 69 100 290 322 281 328 0.78 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 RNA_helicase PF00910.17 107 0.00082 13.0 0.0 1 1 1.8e-05 0.0013 12.3 0.0 1 26 3 28 3 47 0.84 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 UPF0079 PF02367.12 123 8.7e-06 18.8 0.0 1 1 2.5e-07 1.8e-05 17.8 0.0 9 45 152 188 145 193 0.85 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 4_3 - 181 UPF0079 PF02367.12 123 0.00029 13.9 0.0 1 1 6.6e-06 0.00047 13.2 0.0 17 36 2 21 1 30 0.88 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 AAA_24 PF13479.1 213 0.0001 15.3 0.0 1 1 1.4e-06 0.0002 14.4 0.0 6 33 3 34 1 73 0.90 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 Myosin_head PF00063.16 689 0.00023 12.7 0.0 1 1 2.2e-06 0.00032 12.2 0.0 84 110 157 183 147 209 0.90 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 1_16 - 504 UvrD-helicase PF00580.16 315 7.8e-17 54.9 3.9 1 2 2.9e-06 0.00041 13.1 0.1 2 38 8 44 7 64 0.81 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 1_16 - 504 UvrD-helicase PF00580.16 315 7.8e-17 54.9 3.9 2 2 3.4e-15 4.8e-13 42.4 0.3 236 305 161 239 46 246 0.72 # 14212 # 15723 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=3-4bp;gc_cont=0.510 4_3 - 181 NACHT PF05729.7 166 2.2e-05 17.6 0.0 1 2 1.5e-06 0.00011 15.3 0.0 2 22 2 22 1 37 0.89 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 NACHT PF05729.7 166 2.2e-05 17.6 0.0 2 2 0.091 6.5 -0.2 0.0 77 91 151 177 95 179 0.61 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 2_5 - 332 NACHT PF05729.7 166 0.00013 15.1 0.0 1 1 3.8e-06 0.00028 14.0 0.0 1 27 159 185 159 188 0.90 # 1569 # 2564 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.499 2_20 - 488 AAA_25 PF13481.1 194 9.1e-05 15.3 3.6 1 3 0.025 1.8 1.3 1.4 36 55 245 264 224 275 0.81 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_20 - 488 AAA_25 PF13481.1 194 9.1e-05 15.3 3.6 2 3 7e-05 0.005 9.6 0.0 127 176 287 336 270 348 0.69 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 2_20 - 488 AAA_25 PF13481.1 194 9.1e-05 15.3 3.6 3 3 0.0083 0.6 2.9 0.0 69 172 337 440 325 448 0.66 # 9061 # 10524 # -1 # ID=2_20;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.512 1_63 - 262 AAA_25 PF13481.1 194 0.00056 12.7 0.0 1 1 1.2e-05 0.00086 12.1 0.0 42 91 12 51 11 134 0.78 # 50787 # 51572 # -1 # ID=1_63;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.534 4_3 - 181 AAA_28 PF13521.1 163 0.0002 14.8 0.0 1 1 2.9e-06 0.00042 13.7 0.0 2 30 3 34 2 165 0.89 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 APS_kinase PF01583.15 157 2e-05 17.7 0.0 1 2 7.3e-06 0.001 12.1 0.0 4 24 2 22 1 35 0.87 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 4_3 - 181 APS_kinase PF01583.15 157 2e-05 17.7 0.0 2 2 0.0032 0.46 3.5 0.1 34 73 107 148 95 160 0.86 # 841 # 1383 # 1 # ID=4_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.571 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5bdeb146-b739-48b9-950c-1aa0c28cfc27 # Target file: checkm_output/bins/pm96/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm96/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5bdeb146-b739-48b9-950c-1aa0c28cfc27 checkm_output/bins/pm96/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:34 2020 # [ok]