# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_5 - 414 Methyltransf_32 PF13679.1 141 0.00013 15.0 0.2 1 1 2.5e-06 0.00034 13.6 0.0 15 77 48 106 34 163 0.78 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_5 - 414 Methyltransf_12 PF08242.7 99 0.00019 15.2 0.3 1 1 7.9e-06 0.0011 12.8 0.0 2 37 64 97 63 152 0.76 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 4_10 - 234 UPF0020 PF01170.13 180 5e-06 19.5 0.0 1 2 0.00016 0.0073 9.2 0.0 103 120 17 34 5 75 0.83 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_10 - 234 UPF0020 PF01170.13 180 5e-06 19.5 0.0 2 2 0.00028 0.013 8.4 0.0 28 51 170 193 165 227 0.75 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 6_1 - 188 UPF0020 PF01170.13 180 4.9e-05 16.3 0.0 1 1 5.4e-06 0.00025 14.0 0.0 19 43 41 65 39 138 0.91 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_5 - 414 UPF0020 PF01170.13 180 0.00018 14.4 0.0 1 1 8.4e-06 0.00038 13.4 0.0 28 117 58 137 41 169 0.77 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_1 - 188 RrnaAD PF00398.15 262 1.4e-05 17.6 0.0 1 1 1.3e-07 1.8e-05 17.2 0.0 10 113 30 128 26 140 0.87 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 4_18 - 402 MipZ PF09140.6 261 2.6e-06 20.0 0.0 1 2 0.0027 0.37 3.1 0.0 3 50 111 163 109 193 0.73 # 12576 # 13781 # -1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 4_18 - 402 MipZ PF09140.6 261 2.6e-06 20.0 0.0 2 2 8.7e-07 0.00012 14.6 0.0 87 136 233 282 220 296 0.87 # 12576 # 13781 # -1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 3_6 - 565 3HCDH_N PF02737.13 180 0.0044 10.0 6.4 1 2 0.0047 0.65 2.9 2.4 1 30 99 128 99 134 0.93 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 3HCDH_N PF02737.13 180 0.0044 10.0 6.4 2 2 9e-05 0.012 8.6 0.1 2 39 272 309 271 348 0.73 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 GIDA PF01134.17 392 3.5e-08 26.0 6.6 1 3 3.5e-10 4.7e-08 25.5 3.3 2 187 100 279 99 302 0.72 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 GIDA PF01134.17 392 3.5e-08 26.0 6.6 2 3 0.038 5.2 -0.9 0.0 3 31 273 301 271 315 0.84 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 GIDA PF01134.17 392 3.5e-08 26.0 6.6 3 3 0.018 2.5 0.1 0.1 349 385 393 429 387 433 0.77 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 5_17 - 181 SSB PF00436.20 104 6.2e-42 135.1 0.4 1 1 5.5e-44 7.6e-42 134.8 0.4 1 99 6 105 6 113 0.97 # 9077 # 9619 # -1 # ID=5_17;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.621 6_1 - 188 Methyltransf_18 PF12847.2 112 9.8e-08 26.0 0.0 1 1 2.3e-09 1.6e-07 25.3 0.0 2 107 51 144 50 146 0.90 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_5 - 414 Methyltransf_18 PF12847.2 112 2.5e-06 21.4 0.0 1 1 2.1e-07 1.4e-05 19.0 0.0 3 42 60 99 58 194 0.83 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_9 - 1753 UvrD_C_2 PF13538.1 104 1e-07 25.4 0.2 1 1 1.5e-08 7e-07 22.8 0.1 3 102 1339 1442 1335 1444 0.76 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 3_13 - 341 UvrD_C_2 PF13538.1 104 1.5e-06 21.7 0.0 1 1 7e-08 3.2e-06 20.6 0.0 33 104 243 330 222 330 0.75 # 8737 # 9759 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 2_23 - 327 UvrD_C_2 PF13538.1 104 0.00044 13.8 0.0 1 1 6.6e-05 0.003 11.1 0.0 70 103 137 171 83 171 0.86 # 20505 # 21485 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.596 3_6 - 565 Pyr_redox_2 PF07992.9 201 1.1e-43 142.8 0.0 1 1 3.2e-45 4.4e-43 140.8 0.0 2 199 100 410 99 412 0.96 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_29 - 880 DUF87 PF01935.12 229 6.3e-06 19.5 0.0 1 2 0.056 7.6 -0.4 0.2 113 171 312 362 304 396 0.60 # 27840 # 30479 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_29 - 880 DUF87 PF01935.12 229 6.3e-06 19.5 0.0 2 2 3e-07 4.2e-05 16.8 0.0 26 222 484 674 479 681 0.81 # 27840 # 30479 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 3_13 - 341 AAA_22 PF13401.1 131 0.0001 15.8 0.0 1 1 1.1e-05 0.00049 13.6 0.0 8 111 5 155 4 167 0.77 # 8737 # 9759 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 2_7 - 648 AAA_22 PF13401.1 131 0.00011 15.7 0.1 1 2 0.00034 0.015 8.8 0.0 5 28 39 62 35 98 0.79 # 6027 # 7970 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 2_7 - 648 AAA_22 PF13401.1 131 0.00011 15.7 0.1 2 2 0.0088 0.4 4.2 0.0 55 122 175 247 142 256 0.76 # 6027 # 7970 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.358 1_9 - 1753 AAA_22 PF13401.1 131 0.0007 13.1 0.0 1 2 0.017 0.78 3.2 0.0 89 121 504 535 467 537 0.72 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_9 - 1753 AAA_22 PF13401.1 131 0.0007 13.1 0.0 2 2 0.0025 0.11 6.0 0.0 5 28 987 1010 983 1067 0.80 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 3_6 - 565 DFP PF04127.10 185 0.0011 12.0 2.4 1 2 0.00039 0.054 6.4 0.4 28 51 105 128 99 156 0.83 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DFP PF04127.10 185 0.0011 12.0 2.4 2 2 0.0014 0.19 4.7 0.1 32 53 281 302 276 336 0.77 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_14 - 521 AAA_15 PF13175.1 415 6.3e-19 61.6 0.1 1 2 2.4e-10 3.2e-08 26.3 0.0 2 45 5 47 4 64 0.90 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_14 - 521 AAA_15 PF13175.1 415 6.3e-19 61.6 0.1 2 2 1.7e-12 2.3e-10 33.3 0.1 315 414 219 317 177 318 0.72 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_6 - 565 NAD_binding_7 PF13241.1 103 4.7e-07 23.4 1.2 1 2 5.4e-05 0.0074 9.9 0.2 9 38 99 128 96 184 0.89 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_7 PF13241.1 103 4.7e-07 23.4 1.2 2 2 1.4e-05 0.0019 11.8 0.1 8 41 270 306 264 380 0.74 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_10 - 234 N6_N4_Mtase PF01555.13 231 7.6e-33 107.2 0.0 1 2 3.3e-13 4.5e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_10 - 234 N6_N4_Mtase PF01555.13 231 7.6e-33 107.2 0.0 2 2 2e-23 2.7e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 3_14 - 521 AAA_21 PF13304.1 303 1.3e-14 48.1 0.0 1 2 7e-07 9.5e-05 15.8 0.0 2 24 27 49 27 78 0.83 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_14 - 521 AAA_21 PF13304.1 303 1.3e-14 48.1 0.0 2 2 3.3e-11 4.5e-09 30.0 0.1 258 301 274 317 222 319 0.86 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_6 - 565 NAD_binding_8 PF13450.1 68 4.8e-05 16.7 1.2 1 2 3.5e-07 4.8e-05 16.7 1.2 1 35 102 135 102 155 0.90 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_8 PF13450.1 68 4.8e-05 16.7 1.2 2 2 0.041 5.6 0.5 0.2 1 25 274 298 274 303 0.81 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 F420_oxidored PF03807.12 96 0.0097 9.7 4.1 1 2 0.0023 0.32 4.9 1.2 2 31 100 126 99 131 0.87 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 F420_oxidored PF03807.12 96 0.0097 9.7 4.1 2 2 0.0075 1 3.3 0.1 1 34 271 300 271 323 0.87 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_14 - 521 SMC_N PF02463.14 220 1.4e-11 37.4 0.0 1 2 1.4e-11 1.9e-09 30.4 0.0 2 70 4 68 3 79 0.85 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_14 - 521 SMC_N PF02463.14 220 1.4e-11 37.4 0.0 2 2 0.00084 0.12 4.9 0.0 160 204 277 320 203 329 0.85 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 1_10 - 760 AAA_16 PF13191.1 185 3.6e-06 20.4 0.0 1 1 1.4e-07 1.9e-05 18.1 0.0 20 56 181 218 179 254 0.78 # 10890 # 13169 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 3_14 - 521 AAA_23 PF13476.1 202 3.2e-11 37.3 0.0 1 1 9e-13 1.2e-10 35.3 0.0 1 53 6 58 6 144 0.88 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 4_18 - 402 CbiA PF01656.18 195 1.8e-18 60.0 0.0 1 1 2.8e-20 3.9e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 12576 # 13781 # -1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_5 - 414 Methyltransf_25 PF13649.1 101 0.00065 13.4 0.0 1 1 1.1e-05 0.0015 12.2 0.0 1 73 62 132 62 159 0.84 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 3_6 - 565 HI0933_like PF03486.9 409 3e-08 25.8 3.7 1 2 1.2e-06 0.00016 13.5 2.5 2 33 99 130 98 138 0.91 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 HI0933_like PF03486.9 409 3e-08 25.8 3.7 2 2 7.2e-06 0.00099 10.9 0.0 82 164 284 366 276 385 0.83 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_14 - 521 AAA_29 PF13555.1 62 2.1e-07 23.8 0.0 1 1 2.9e-09 4e-07 22.9 0.0 2 49 5 50 4 57 0.81 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_6 - 565 FAD_binding_2 PF00890.19 417 5.9e-06 18.6 4.7 1 3 4.3e-08 5.9e-06 18.6 4.7 2 32 100 130 99 137 0.90 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 FAD_binding_2 PF00890.19 417 5.9e-06 18.6 4.7 2 3 0.034 4.7 -0.8 0.1 143 204 311 369 297 388 0.72 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 FAD_binding_2 PF00890.19 417 5.9e-06 18.6 4.7 3 3 0.074 10 -1.9 0.0 376 402 388 408 377 424 0.82 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_26 - 134 CobU PF02283.11 167 0.00054 12.7 0.2 1 1 7.2e-06 0.00099 11.9 0.0 64 112 80 129 59 133 0.70 # 26380 # 26781 # -1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.530 3_6 - 565 Pyr_redox_3 PF13738.1 203 1.7e-17 57.4 0.1 1 2 4.4e-14 6.1e-12 39.3 0.1 1 201 101 303 101 305 0.75 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 Pyr_redox_3 PF13738.1 203 1.7e-17 57.4 0.1 2 2 9e-07 0.00012 15.5 0.0 93 147 320 375 309 430 0.76 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_5 - 414 N6_Mtase PF02384.11 311 1.1e-17 57.4 0.4 1 1 2.3e-19 1.6e-17 56.9 0.4 21 271 33 281 26 316 0.80 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_1 - 188 N6_Mtase PF02384.11 311 0.00064 12.2 0.0 1 2 7.6e-05 0.0052 9.2 0.0 28 71 32 75 21 89 0.82 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 6_1 - 188 N6_Mtase PF02384.11 311 0.00064 12.2 0.0 2 2 0.057 3.9 -0.3 0.0 123 137 110 124 102 132 0.81 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 1_10 - 760 TraG-D_C PF12696.2 128 1.3e-19 63.7 0.0 1 1 2.1e-21 2.9e-19 62.6 0.0 1 127 419 541 419 542 0.88 # 10890 # 13169 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 4_18 - 402 AAA_31 PF13614.1 157 0.00013 15.3 0.0 1 1 5.5e-06 0.00075 12.8 0.0 108 147 235 273 230 279 0.86 # 12576 # 13781 # -1 # ID=4_18;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 6_1 - 188 Methyltransf_26 PF13659.1 117 1e-12 41.5 0.0 1 1 3.8e-14 1.7e-12 40.8 0.0 2 111 52 144 51 148 0.91 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 4_10 - 234 Methyltransf_26 PF13659.1 117 3.7e-11 36.5 0.2 1 2 9.7e-07 4.4e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_10 - 234 Methyltransf_26 PF13659.1 117 3.7e-11 36.5 0.2 2 2 5.9e-07 2.7e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_5 - 414 Methyltransf_26 PF13659.1 117 1.2e-09 31.6 0.0 1 1 4.8e-11 2.2e-09 30.8 0.0 3 116 61 186 59 187 0.69 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_9 - 1753 AAA_30 PF13604.1 196 5.7e-45 146.6 5.2 1 2 4.7e-07 6.4e-05 15.9 1.0 9 126 423 535 421 560 0.86 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_9 - 1753 AAA_30 PF13604.1 196 5.7e-45 146.6 5.2 2 2 2.8e-42 3.9e-40 130.9 0.2 2 186 970 1157 969 1161 0.93 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_29 - 880 FtsK_SpoIIIE PF01580.13 205 0.00015 14.6 0.0 1 1 2.7e-06 0.00037 13.3 0.0 39 63 480 506 466 508 0.85 # 27840 # 30479 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 2_5 - 414 MTS PF05175.9 170 4.7e-11 35.7 0.1 1 2 4e-12 2.8e-10 33.2 0.0 20 116 47 144 43 151 0.81 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 2_5 - 414 MTS PF05175.9 170 4.7e-11 35.7 0.1 2 2 0.092 6.3 -0.5 0.1 72 104 271 305 249 313 0.73 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_1 - 188 MTS PF05175.9 170 3.8e-10 32.7 0.0 1 1 7.8e-12 5.3e-10 32.3 0.0 24 142 43 150 38 170 0.82 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_14 - 521 DUF2813 PF11398.3 373 4.7e-05 15.9 3.2 1 2 5.9e-06 0.00081 11.8 0.0 12 49 13 51 3 56 0.79 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_14 - 521 DUF2813 PF11398.3 373 4.7e-05 15.9 3.2 2 2 0.0012 0.16 4.3 0.2 280 333 271 325 258 330 0.80 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_14 - 521 ABC_tran PF00005.22 137 0.0004 14.1 0.0 1 1 9.1e-06 0.0012 12.5 0.0 15 113 28 155 18 161 0.71 # 9744 # 11306 # -1 # ID=3_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.536 3_6 - 565 K_oxygenase PF13434.1 341 7.8e-06 18.3 0.0 1 3 0.0039 0.54 2.4 0.0 187 220 94 125 59 130 0.79 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 K_oxygenase PF13434.1 341 7.8e-06 18.3 0.0 2 3 3.3e-06 0.00046 12.5 0.0 132 231 218 308 202 332 0.82 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 K_oxygenase PF13434.1 341 7.8e-06 18.3 0.0 3 3 0.057 7.8 -1.4 0.0 132 160 346 369 314 377 0.67 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 4_10 - 234 Cons_hypoth95 PF03602.10 183 4.1e-06 19.6 0.0 1 2 0.00012 0.017 7.8 0.0 113 170 19 78 12 86 0.73 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_10 - 234 Cons_hypoth95 PF03602.10 183 4.1e-06 19.6 0.0 2 2 3.1e-05 0.0043 9.8 0.0 20 60 149 188 142 225 0.73 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 2_5 - 414 Eco57I PF07669.6 106 2.1e-07 24.7 0.3 1 1 4.6e-09 6.3e-07 23.1 0.0 4 103 128 234 125 237 0.84 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_9 - 1753 AAA_19 PF13245.1 76 1.3e-05 18.3 2.2 1 1 1.6e-07 2.2e-05 17.5 0.2 7 74 982 1046 977 1049 0.72 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_29 - 880 AAA_10 PF12846.2 304 1.1e-45 149.7 0.0 1 1 2.5e-47 1.7e-45 149.1 0.0 1 294 481 773 481 779 0.85 # 27840 # 30479 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_10 - 760 AAA_10 PF12846.2 304 2.1e-09 30.5 0.0 1 2 1e-05 0.00069 12.4 0.0 3 43 187 227 186 261 0.92 # 10890 # 13169 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 760 AAA_10 PF12846.2 304 2.1e-09 30.5 0.0 2 2 8.1e-07 5.6e-05 16.0 0.0 201 296 398 494 281 499 0.85 # 10890 # 13169 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 3_6 - 565 FAD_oxidored PF12831.2 428 4e-06 19.4 3.6 1 1 2.9e-08 4e-06 19.4 3.6 2 41 100 138 99 167 0.83 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DAO PF01266.19 358 5.8e-09 28.6 11.7 1 3 1.4e-08 1.9e-06 20.3 0.7 1 38 99 134 99 190 0.84 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DAO PF01266.19 358 5.8e-09 28.6 11.7 2 3 0.032 4.3 -0.6 0.1 3 31 273 301 271 307 0.75 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 DAO PF01266.19 358 5.8e-09 28.6 11.7 3 3 9.4e-07 0.00013 14.3 0.5 152 208 314 372 307 433 0.74 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 2_5 - 414 Methyltransf_31 PF13847.1 152 9.4e-07 21.9 0.0 1 1 2.9e-08 2e-06 20.8 0.0 2 43 57 97 56 143 0.87 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 6_1 - 188 Methyltransf_31 PF13847.1 152 0.0011 12.0 0.0 1 1 1.9e-05 0.0013 11.6 0.0 3 118 50 156 48 182 0.83 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 3_13 - 341 Viral_helicase1 PF01443.13 234 5.1e-11 35.8 0.3 1 2 4.9e-07 6.7e-05 15.8 0.0 2 30 5 38 4 54 0.72 # 8737 # 9759 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 3_13 - 341 Viral_helicase1 PF01443.13 234 5.1e-11 35.8 0.3 2 2 2.1e-07 2.9e-05 17.0 0.5 63 233 133 330 125 331 0.66 # 8737 # 9759 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 3_6 - 565 NAD_binding_9 PF13454.1 156 3.9e-05 16.8 2.8 1 3 0.0081 1.1 2.3 0.1 1 41 101 135 101 162 0.81 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_9 PF13454.1 156 3.9e-05 16.8 2.8 2 3 0.034 4.6 0.3 0.0 134 155 218 241 202 242 0.72 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 NAD_binding_9 PF13454.1 156 3.9e-05 16.8 2.8 3 3 6.6e-06 0.00091 12.4 0.1 112 155 321 366 311 367 0.85 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 Pyr_redox PF00070.22 80 4.9e-20 65.1 6.0 1 2 1.4e-06 0.0002 15.2 1.5 1 31 99 129 99 131 0.96 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 Pyr_redox PF00070.22 80 4.9e-20 65.1 6.0 2 2 6.2e-18 8.5e-16 51.6 0.2 1 74 271 345 271 354 0.90 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 1_10 - 760 TrwB_AAD_bind PF10412.4 386 8.3e-149 488.7 0.0 1 1 1.7e-150 1.2e-148 488.1 0.0 2 386 172 561 171 561 0.99 # 10890 # 13169 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_29 - 880 TrwB_AAD_bind PF10412.4 386 2.1e-05 16.6 0.2 1 1 8e-07 5.5e-05 15.2 0.0 16 91 482 553 474 569 0.71 # 27840 # 30479 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 1_9 - 1753 AAA_11 PF13086.1 236 1.5e-05 18.0 0.1 1 3 6.4e-05 0.0088 8.9 0.0 2 69 970 1034 969 1062 0.76 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_9 - 1753 AAA_11 PF13086.1 236 1.5e-05 18.0 0.1 2 3 0.0019 0.25 4.2 0.0 196 231 1068 1106 1042 1108 0.80 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_9 - 1753 AAA_11 PF13086.1 236 1.5e-05 18.0 0.1 3 3 0.033 4.5 0.1 0.0 3 34 1181 1211 1179 1334 0.70 # 5632 # 10890 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.615 1_10 - 760 T4SS-DNA_transf PF02534.9 469 1.7e-08 26.7 0.0 1 2 0.034 4.7 -1.1 0.0 128 199 260 330 249 359 0.73 # 10890 # 13169 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_10 - 760 T4SS-DNA_transf PF02534.9 469 1.7e-08 26.7 0.0 2 2 4.6e-10 6.3e-08 24.9 0.0 275 392 393 506 363 559 0.74 # 10890 # 13169 # -1 # ID=1_10;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 6_1 - 188 TIGR00755 TIGR00755 256 7.4e-07 21.7 0.0 1 1 1.5e-08 1e-06 21.2 0.0 8 105 29 123 26 128 0.88 # 181 # 744 # -1 # ID=6_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.605 2_5 - 414 TIGR00755 TIGR00755 256 1.4e-06 20.8 0.0 1 1 4.4e-08 3e-06 19.7 0.0 3 108 33 140 31 165 0.77 # 3881 # 5122 # 1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.362 1_29 - 880 Pox_A32 PF04665.7 241 0.0001 15.0 0.0 1 1 1.5e-06 0.00021 14.0 0.0 6 40 474 508 470 523 0.82 # 27840 # 30479 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.547 3_6 - 565 AlaDh_PNT_C PF01262.16 168 3.3e-05 16.9 3.1 1 2 0.00051 0.07 6.0 0.8 15 50 92 127 89 130 0.90 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_6 - 565 AlaDh_PNT_C PF01262.16 168 3.3e-05 16.9 3.1 2 2 2.1e-05 0.0029 10.5 0.1 16 58 265 307 257 339 0.84 # 2771 # 4465 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.651 3_13 - 341 UvrD-helicase PF00580.16 315 2.8e-08 26.7 0.0 1 2 1.2e-05 0.0017 11.0 0.0 16 67 4 47 2 86 0.80 # 8737 # 9759 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 3_13 - 341 UvrD-helicase PF00580.16 315 2.8e-08 26.7 0.0 2 2 1.9e-06 0.00027 13.6 0.0 242 294 115 170 91 174 0.86 # 8737 # 9759 # -1 # ID=3_13;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.552 4_10 - 234 Methyltransf_15 PF09445.5 164 0.001 12.0 0.0 1 2 0.023 3.1 0.6 0.0 53 80 4 30 2 38 0.91 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 4_10 - 234 Methyltransf_15 PF09445.5 164 0.001 12.0 0.0 2 2 7e-05 0.0096 8.8 0.0 3 30 173 200 171 213 0.90 # 4599 # 5300 # -1 # ID=4_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/044a1115-7d3b-4d38-805a-6adfa97b2eb4 # Target file: checkm_output/bins/pm95/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm95/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/044a1115-7d3b-4d38-805a-6adfa97b2eb4 checkm_output/bins/pm95/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:28 2020 # [ok]