# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 526 Seryl_tRNA_N PF02403.17 108 0.00049 12.4 8.8 1 3 0.0038 0.24 3.8 0.1 39 104 227 293 206 297 0.90 # 46195 # 47772 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 526 Seryl_tRNA_N PF02403.17 108 0.00049 12.4 8.8 2 3 0.0012 0.076 5.4 0.1 27 59 324 356 312 377 0.85 # 46195 # 47772 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 526 Seryl_tRNA_N PF02403.17 108 0.00049 12.4 8.8 3 3 0.00086 0.055 5.8 1.7 17 107 396 485 390 486 0.75 # 46195 # 47772 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_36 - 344 IstB_IS21 PF01695.12 178 0.00028 12.6 0.0 1 1 8.3e-06 0.00053 11.7 0.0 44 66 160 182 141 186 0.93 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_7 - 221 MipZ PF09140.6 261 4.8e-10 31.2 1.8 1 1 2.5e-09 1.6e-07 22.9 1.3 2 130 4 111 3 132 0.75 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_36 - 344 AAA_22 PF13401.1 131 0.00032 13.1 0.0 1 1 8.7e-06 0.00056 12.4 0.0 4 30 163 189 160 240 0.68 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_36 - 344 ATP_bind_1 PF03029.12 238 0.00029 12.7 0.0 1 1 1.4e-05 0.00043 12.1 0.0 2 23 169 190 168 206 0.87 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_7 - 221 ATP_bind_1 PF03029.12 238 0.00053 11.8 0.2 1 1 0.0003 0.0095 7.7 0.2 6 40 13 47 10 115 0.83 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_7 - 221 SRP54 PF00448.17 196 0.00032 12.4 0.1 1 1 1.1e-05 0.00068 11.4 0.1 10 98 12 94 3 134 0.78 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_52 - 634 AAA_15 PF13175.1 415 2.6e-14 45.3 4.4 1 2 1.8e-09 1.2e-07 23.4 1.2 4 115 6 196 3 262 0.66 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_52 - 634 AAA_15 PF13175.1 415 2.6e-14 45.3 4.4 2 2 3.7e-09 2.4e-07 22.3 0.1 339 413 302 372 282 374 0.81 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_36 - 344 AAA_17 PF13207.1 121 3e-05 17.2 0.0 1 1 1e-06 6.4e-05 16.1 0.0 2 43 166 207 165 243 0.80 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_52 - 634 AAA_21 PF13304.1 303 2.2e-14 46.3 9.6 1 2 3.5e-16 2.2e-14 46.3 9.6 4 302 28 374 26 375 0.70 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_52 - 634 AAA_21 PF13304.1 303 2.2e-14 46.3 9.6 2 2 0.079 5.1 -0.8 2.1 43 115 387 461 378 542 0.61 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_7 - 221 MobB PF03205.9 140 6.7e-06 18.1 0.7 1 2 2e-05 0.00065 11.7 0.3 2 37 4 40 3 52 0.86 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_7 - 221 MobB PF03205.9 140 6.7e-06 18.1 0.7 2 2 0.0032 0.1 4.6 0.0 44 75 85 119 72 133 0.81 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_36 - 344 MobB PF03205.9 140 7.6e-05 14.7 0.0 1 1 4.3e-06 0.00014 13.9 0.0 2 42 165 204 164 227 0.86 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_7 - 221 ArsA_ATPase PF02374.10 305 4.3e-09 28.0 0.1 1 1 1.2e-10 7.9e-09 27.2 0.1 4 43 6 45 3 61 0.91 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_36 - 344 T2SE PF00437.15 272 6.3e-53 171.6 0.0 1 1 1.2e-54 7.7e-53 171.3 0.0 12 266 25 311 15 316 0.88 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_36 - 344 Zeta_toxin PF06414.7 201 1.6e-05 16.3 0.0 1 1 3.9e-07 2.5e-05 15.7 0.0 11 59 157 208 148 232 0.81 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_52 - 634 SMC_N PF02463.14 220 6.1e-06 17.8 1.2 1 2 3.3e-07 2.1e-05 16.1 0.4 3 46 4 45 2 55 0.81 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_52 - 634 SMC_N PF02463.14 220 6.1e-06 17.8 1.2 2 2 0.089 5.7 -1.7 0.0 86 113 155 182 140 203 0.59 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_7 - 221 VirC1 PF07015.6 231 9.2e-09 26.9 0.0 1 1 2.6e-10 1.7e-08 26.1 0.0 3 55 4 56 2 61 0.92 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_7 - 221 Fer4_NifH PF00142.13 273 9.8e-07 20.4 0.2 1 1 3.7e-08 2.4e-06 19.2 0.1 6 41 9 44 5 52 0.91 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_52 - 634 AAA_23 PF13476.1 202 7.3e-07 21.9 0.5 1 1 2.3e-08 7.3e-07 21.9 0.5 24 143 28 158 8 264 0.57 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_36 - 344 AAA_23 PF13476.1 202 0.00028 13.5 0.2 1 1 1.7e-05 0.00054 12.6 0.2 21 38 165 182 158 185 0.89 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_56 - 526 AAA_13 PF13166.1 712 0.0017 9.1 17.5 1 2 2.3e-05 0.0014 9.3 2.9 365 468 251 356 202 376 0.54 # 46195 # 47772 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_56 - 526 AAA_13 PF13166.1 712 0.0017 9.1 17.5 2 2 0.00032 0.021 5.5 7.0 322 439 392 519 372 525 0.75 # 46195 # 47772 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.475 1_7 - 221 CbiA PF01656.18 195 2.5e-15 48.6 0.6 1 1 1.1e-16 6.9e-15 47.2 0.6 2 167 6 155 5 180 0.73 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_36 - 344 KaiC PF06745.8 227 6.8e-05 14.3 0.1 1 1 1.8e-06 0.00012 13.5 0.1 7 37 151 181 147 187 0.93 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_36 - 344 AAA_29 PF13555.1 62 3.2e-05 15.7 0.0 1 1 1.1e-06 7e-05 14.7 0.0 10 43 150 183 143 186 0.82 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_36 - 344 DUF258 PF03193.11 161 0.00013 13.4 0.0 1 1 3.3e-06 0.00021 12.8 0.0 31 59 158 187 144 220 0.82 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_37 - 612 TraG-D_C PF12696.2 128 2.4e-27 87.6 0.0 1 1 6.3e-29 4.1e-27 86.9 0.0 2 127 416 534 415 535 0.86 # 28883 # 30718 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 221 AAA_31 PF13614.1 157 5.1e-07 22.0 0.0 1 2 8.5e-07 5.5e-05 15.4 0.0 1 41 3 43 3 57 0.90 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_7 - 221 AAA_31 PF13614.1 157 5.1e-07 22.0 0.0 2 2 0.0021 0.14 4.4 0.0 111 151 73 112 63 115 0.83 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_36 - 344 AAA_33 PF13671.1 143 1e-05 17.7 0.0 1 2 0.072 4.6 -0.6 0.0 7 39 96 127 93 151 0.79 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_36 - 344 AAA_33 PF13671.1 143 1e-05 17.7 0.0 2 2 7.5e-07 4.8e-05 15.5 0.0 2 25 166 191 165 258 0.69 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_52 - 634 DUF2813 PF11398.3 373 4.1e-06 18.3 0.0 1 2 3.2e-05 0.002 9.4 0.0 25 87 26 86 1 95 0.77 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_52 - 634 DUF2813 PF11398.3 373 4.1e-06 18.3 0.0 2 2 0.00023 0.014 6.6 0.0 262 330 309 378 286 398 0.70 # 42414 # 44315 # -1 # ID=1_52;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.355 1_36 - 344 ABC_tran PF00005.22 137 5e-05 15.9 0.0 1 1 2.1e-06 0.00014 14.5 0.0 7 32 159 184 155 226 0.85 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_29 - 918 AAA_10 PF12846.2 304 7e-36 116.4 0.0 1 1 1.8e-37 1.1e-35 115.7 0.0 3 297 539 828 538 834 0.93 # 19859 # 22612 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.443 1_36 - 344 DEAD PF00270.24 169 0.00018 13.3 0.0 1 1 4.4e-06 0.00028 12.7 0.0 6 33 154 182 151 246 0.77 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_37 - 612 TrwB_AAD_bind PF10412.4 386 5.8e-21 66.7 0.0 1 1 1.4e-22 9.2e-21 66.1 0.0 165 380 331 548 306 552 0.86 # 28883 # 30718 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_37 - 612 T4SS-DNA_transf PF02534.9 469 2.2e-145 477.0 0.0 1 1 4.3e-147 2.8e-145 476.7 0.0 2 461 102 571 101 579 0.98 # 28883 # 30718 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.421 1_7 - 221 ArgK PF03308.11 267 0.00035 11.6 0.1 1 2 1.6e-05 0.001 10.1 0.1 37 66 11 40 3 45 0.88 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_7 - 221 ArgK PF03308.11 267 0.00035 11.6 0.1 2 2 0.071 4.5 -1.8 0.0 154 174 88 107 63 144 0.54 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_7 - 221 GTP_EFTU PF00009.22 188 1.5e-07 23.3 0.1 1 1 2.6e-09 1.7e-07 23.1 0.1 15 139 15 153 6 211 0.72 # 7278 # 7940 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_36 - 344 UPF0079 PF02367.12 123 0.00021 13.2 0.0 1 1 6.2e-06 0.0004 12.3 0.0 8 39 156 187 151 196 0.83 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 1_36 - 344 AAA_25 PF13481.1 194 0.00011 13.9 0.0 1 1 2.4e-06 0.00015 13.4 0.0 22 51 152 181 137 247 0.87 # 27849 # 28880 # 1 # ID=1_36;partial=00;start_type=GTG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.412 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/88527f83-c95d-4dd9-bf83-03b140c61474 # Target file: checkm_output/bins/pm935/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm935/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/88527f83-c95d-4dd9-bf83-03b140c61474 checkm_output/bins/pm935/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:20 2020 # [ok]