# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_27 - 188 Methyltransf_12 PF08242.7 99 3.5e-06 20.0 0.0 1 1 8.1e-08 6.2e-06 19.2 0.0 1 99 55 144 55 144 0.85 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_18 - 228 UPF0020 PF01170.13 180 2.8e-06 19.5 0.0 1 2 0.00016 0.0062 8.6 0.0 102 123 16 37 2 89 0.68 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 2_18 - 228 UPF0020 PF01170.13 180 2.8e-06 19.5 0.0 2 2 0.00012 0.0047 9.0 0.0 28 54 163 189 158 221 0.67 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 2_27 - 188 UPF0020 PF01170.13 180 0.00077 11.6 0.0 1 1 5.9e-05 0.0023 10.0 0.0 20 43 42 65 35 129 0.75 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_27 - 188 RrnaAD PF00398.15 262 4e-09 28.3 0.0 1 1 6.7e-11 5.1e-09 28.0 0.0 9 113 29 128 24 148 0.89 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 3_1 - 180 SSB PF00436.20 104 2.7e-41 132.2 0.3 1 1 4.5e-43 3.4e-41 131.9 0.3 1 101 6 109 6 112 0.96 # 149 # 688 # 1 # ID=3_1;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.591 2_27 - 188 Methyltransf_18 PF12847.2 112 2.6e-11 36.7 0.0 1 1 7.3e-13 5.5e-11 35.6 0.0 4 109 53 146 50 148 0.87 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_34 - 1757 UvrD_C_2 PF13538.1 104 3.6e-08 26.1 1.0 1 2 0.013 0.99 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 28260 # 33530 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_34 - 1757 UvrD_C_2 PF13538.1 104 3.6e-08 26.1 1.0 2 2 1.4e-08 1.1e-06 21.3 0.2 3 102 1341 1444 1339 1446 0.79 # 28260 # 33530 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_17 - 877 DUF87 PF01935.12 229 8.2e-08 24.8 0.0 1 1 3.3e-09 2.5e-07 23.2 0.0 26 222 483 670 469 677 0.77 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_18 - 228 N6_N4_Mtase PF01555.13 231 4.4e-37 120.2 0.0 1 1 5.4e-36 4.1e-34 110.5 0.0 1 228 21 200 21 203 0.90 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_33 - 741 AAA_17 PF13207.1 121 0.00027 14.3 0.0 1 1 8e-06 0.00061 13.2 0.0 3 28 189 218 187 355 0.77 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_17 - 877 MobB PF03205.9 140 0.0002 13.6 0.2 1 2 2.7e-05 0.002 10.3 0.0 4 37 484 516 482 524 0.79 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_17 - 877 MobB PF03205.9 140 0.0002 13.6 0.2 2 2 0.034 2.6 0.3 0.0 25 64 696 733 691 745 0.86 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_7 - 120 CTP_transf_2 PF01467.21 157 0.00061 12.4 0.0 1 1 8.5e-06 0.00064 12.3 0.0 31 64 6 38 1 93 0.70 # 4209 # 4568 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.517 1_33 - 741 Zeta_toxin PF06414.7 201 0.0002 13.0 0.0 1 2 3.3e-05 0.0025 9.4 0.0 21 49 190 219 182 245 0.86 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_33 - 741 Zeta_toxin PF06414.7 201 0.0002 13.0 0.0 2 2 0.028 2.1 -0.2 0.0 54 92 285 324 282 344 0.85 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_33 - 741 AAA_16 PF13191.1 185 3.5e-06 19.6 0.0 1 1 4.1e-07 1.6e-05 17.5 0.0 21 60 182 222 179 262 0.81 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_13 - 123 AAA_16 PF13191.1 185 0.001 11.6 0.1 1 1 4.6e-05 0.0017 10.8 0.1 22 48 86 112 80 119 0.88 # 8143 # 8511 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.417 2_27 - 188 N6_Mtase PF02384.11 311 0.00016 13.3 0.0 1 2 3.3e-05 0.0025 9.4 0.0 28 62 32 66 21 76 0.89 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_27 - 188 N6_Mtase PF02384.11 311 0.00016 13.3 0.0 2 2 0.012 0.89 1.0 0.0 126 137 113 124 101 134 0.81 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_33 - 741 TraG-D_C PF12696.2 128 6e-21 67.2 0.0 1 1 1.4e-22 1.1e-20 66.4 0.0 1 127 421 543 421 544 0.86 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_13 - 123 KTI12 PF08433.5 270 0.00064 11.4 0.1 1 1 1.4e-05 0.0011 10.7 0.1 5 30 92 117 91 120 0.87 # 8143 # 8511 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.417 2_27 - 188 Methyltransf_26 PF13659.1 117 7e-15 47.7 0.1 1 1 3.3e-16 1.3e-14 46.8 0.1 2 114 52 147 51 150 0.91 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_18 - 228 Methyltransf_26 PF13659.1 117 1.1e-13 43.9 0.1 1 2 6.9e-09 2.6e-07 23.2 0.0 53 114 3 71 2 74 0.78 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 2_18 - 228 Methyltransf_26 PF13659.1 117 1.1e-13 43.9 0.1 2 2 1.9e-07 7.3e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_34 - 1757 AAA_30 PF13604.1 196 8.7e-45 145.2 14.2 1 3 0.083 3.2 -0.2 0.0 41 86 223 269 219 281 0.81 # 28260 # 33530 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_34 - 1757 AAA_30 PF13604.1 196 8.7e-45 145.2 14.2 2 3 1.9e-05 0.00071 11.7 3.8 7 147 420 552 416 562 0.84 # 28260 # 33530 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_34 - 1757 AAA_30 PF13604.1 196 8.7e-45 145.2 14.2 3 3 6e-44 2.3e-42 137.3 1.3 1 186 968 1156 968 1164 0.93 # 28260 # 33530 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_33 - 741 AAA_30 PF13604.1 196 0.00047 12.3 0.0 1 1 2.6e-05 0.00099 11.2 0.0 21 57 188 224 180 230 0.85 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_17 - 877 FtsK_SpoIIIE PF01580.13 205 3.2e-06 19.3 0.2 1 2 2e-06 0.00015 13.7 0.0 39 63 477 505 464 508 0.84 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_17 - 877 FtsK_SpoIIIE PF01580.13 205 3.2e-06 19.3 0.2 2 2 0.0038 0.29 3.0 0.1 75 167 531 627 530 633 0.85 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_27 - 188 MTS PF05175.9 170 1.1e-09 30.4 0.0 1 1 2e-11 1.5e-09 29.9 0.0 24 141 45 149 41 166 0.84 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_27 - 188 Methyltrans_SAM PF10672.4 286 0.00064 11.1 0.0 1 1 1.2e-05 0.00091 10.6 0.0 196 261 113 173 101 180 0.78 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_27 - 188 Met_10 PF02475.11 200 0.00014 14.0 0.0 1 1 2.5e-06 0.00019 13.6 0.0 94 189 43 132 29 145 0.81 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_18 - 228 Cons_hypoth95 PF03602.10 183 5.5e-06 18.4 0.0 1 2 0.00022 0.017 7.0 0.0 112 146 18 54 2 82 0.64 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 2_18 - 228 Cons_hypoth95 PF03602.10 183 5.5e-06 18.4 0.0 2 2 4e-05 0.003 9.4 0.0 41 62 162 183 145 218 0.78 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_34 - 1757 AAA_19 PF13245.1 76 7.2e-08 24.7 1.4 1 1 8.9e-09 3.4e-07 22.5 0.3 7 76 981 1047 974 1047 0.74 # 28260 # 33530 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_13 - 123 AAA_19 PF13245.1 76 0.00051 12.3 0.0 1 1 2.2e-05 0.00082 11.7 0.0 13 37 91 115 82 122 0.78 # 8143 # 8511 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.417 1_17 - 877 AAA_10 PF12846.2 304 3e-49 160.5 0.0 1 1 1.3e-50 5e-49 159.8 0.0 1 294 480 769 480 775 0.88 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_33 - 741 AAA_10 PF12846.2 304 1.1e-10 34.0 0.0 1 1 3.9e-11 1.5e-09 30.2 0.0 3 296 187 496 186 501 0.70 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 2_27 - 188 Methyltransf_31 PF13847.1 152 6.2e-08 24.9 0.0 1 1 1e-09 7.6e-08 24.6 0.0 5 119 52 162 48 183 0.83 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 1_33 - 741 TrwB_AAD_bind PF10412.4 386 3.7e-150 492.3 0.0 1 1 1.8e-151 4.6e-150 492.0 0.0 2 386 172 563 171 563 0.99 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_17 - 877 TrwB_AAD_bind PF10412.4 386 3.1e-07 21.8 0.1 1 2 7.2e-08 1.8e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_17 - 877 TrwB_AAD_bind PF10412.4 386 3.1e-07 21.8 0.1 2 2 0.061 1.6 -0.3 0.0 261 317 714 770 686 773 0.92 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_8 - 335 TrwB_AAD_bind PF10412.4 386 7.7e-06 17.2 0.0 1 1 4e-07 1e-05 16.8 0.0 45 135 172 272 140 298 0.76 # 6133 # 7137 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_34 - 1757 AAA_11 PF13086.1 236 8.8e-05 14.6 1.9 1 1 2.7e-06 0.00021 13.4 0.0 2 75 969 1039 968 1060 0.80 # 28260 # 33530 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 2_8 - 335 T4SS-DNA_transf PF02534.9 469 7.7e-40 129.2 0.0 1 1 4.1e-41 1e-39 128.8 0.0 1 172 111 270 111 281 0.93 # 6133 # 7137 # 1 # ID=2_8;partial=00;start_type=TTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.614 1_33 - 741 T4SS-DNA_transf PF02534.9 469 3.7e-10 31.4 0.0 1 1 5.5e-11 1.4e-09 29.5 0.0 264 363 384 480 198 512 0.83 # 26038 # 28260 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.525 1_17 - 877 T4SS-DNA_transf PF02534.9 469 0.00016 12.8 0.0 1 2 0.0047 0.12 3.3 0.0 105 184 534 607 471 626 0.82 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 1_17 - 877 T4SS-DNA_transf PF02534.9 469 0.00016 12.8 0.0 2 2 0.00032 0.0082 7.2 0.0 319 378 712 770 663 772 0.90 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_27 - 188 TIGR00755 TIGR00755 256 1.1e-09 30.1 0.0 1 1 1.9e-11 1.5e-09 29.7 0.0 8 105 29 123 25 134 0.91 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_18 - 228 MethyltransfD12 PF02086.10 260 0.00044 12.2 0.0 1 2 0.023 1.8 0.4 0.0 178 188 21 31 13 87 0.85 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 2_18 - 228 MethyltransfD12 PF02086.10 260 0.00044 12.2 0.0 2 2 4e-05 0.003 9.5 0.0 20 46 163 189 148 197 0.78 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 1_17 - 877 Pox_A32 PF04665.7 241 0.00065 11.5 0.0 1 1 2.3e-05 0.0017 10.1 0.0 7 38 474 505 470 520 0.85 # 10647 # 13277 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.545 2_27 - 188 Methyltransf_23 PF13489.1 161 4.7e-06 18.9 0.0 1 1 7.1e-08 5.4e-06 18.7 0.0 11 120 40 153 10 174 0.80 # 19803 # 20366 # 1 # ID=2_27;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.590 2_18 - 228 Methyltransf_15 PF09445.5 164 0.00021 13.4 0.0 1 2 0.012 0.94 1.5 0.0 53 80 4 30 2 34 0.91 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 2_18 - 228 Methyltransf_15 PF09445.5 164 0.00021 13.4 0.0 2 2 4.2e-05 0.0032 9.5 0.0 3 31 166 194 164 209 0.86 # 13408 # 14091 # 1 # ID=2_18;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.582 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2a5f5240-0f85-4710-84fe-e4cb944e1320 # Target file: checkm_output/bins/pm929/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm929/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2a5f5240-0f85-4710-84fe-e4cb944e1320 checkm_output/bins/pm929/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:16 2020 # [ok]