# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_7 - 207 cobW PF02492.14 178 0.00015 13.4 0.2 1 2 1.8e-05 0.0011 10.6 0.0 10 38 12 41 3 47 0.86 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 cobW PF02492.14 178 0.00015 13.4 0.2 2 2 0.019 1.2 0.7 0.1 114 146 115 147 71 170 0.78 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_10 - 288 DUF1776 PF08643.5 299 9.9e-07 20.3 0.0 1 1 2.2e-08 1.3e-06 19.9 0.0 105 197 94 183 43 200 0.92 # 6047 # 6910 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_7 - 207 MipZ PF09140.6 261 1.1e-14 46.3 0.9 1 2 1.3e-11 8e-10 30.4 0.0 2 47 3 47 2 57 0.88 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 MipZ PF09140.6 261 1.1e-14 46.3 0.9 2 2 8.2e-07 5e-05 14.6 0.3 96 141 73 118 52 146 0.85 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 DUF1611 PF07755.6 301 2.3e-06 18.6 0.3 1 1 5.8e-08 3.5e-06 18.0 0.3 124 200 13 90 11 106 0.86 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 ATP_bind_1 PF03029.12 238 2.9e-05 15.9 0.0 1 1 8.4e-07 5.1e-05 15.1 0.0 6 42 12 48 10 74 0.85 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 SRP54 PF00448.17 196 6.4e-05 14.6 0.4 1 1 3.6e-06 0.00022 12.9 0.3 11 54 12 50 2 142 0.73 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 AAA_17 PF13207.1 121 5.2e-05 16.3 0.0 1 1 1.1e-06 7e-05 15.9 0.0 9 80 12 86 11 171 0.71 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_30 - 246 Adenylsucc_synt PF00709.16 421 0.0032 8.3 5.4 1 2 3.9e-05 0.0024 8.7 0.1 165 229 49 114 22 117 0.78 # 18053 # 18790 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_30 - 246 Adenylsucc_synt PF00709.16 421 0.0032 8.3 5.4 2 2 0.0072 0.44 1.2 1.5 143 180 187 225 143 241 0.57 # 18053 # 18790 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.439 1_7 - 207 MobB PF03205.9 140 1.6e-06 20.1 0.4 1 1 1.4e-07 8.3e-06 17.8 0.1 10 104 12 88 2 104 0.68 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 LpxK PF02606.9 326 3.3e-05 15.1 0.1 1 1 8.4e-07 5.1e-05 14.5 0.1 46 71 11 36 2 38 0.94 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 ArsA_ATPase PF02374.10 305 1.8e-08 26.0 0.2 1 1 4.8e-10 3e-08 25.2 0.2 5 45 6 46 1 66 0.90 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 346 T2SE PF00437.15 272 1.7e-49 160.3 0.0 1 1 3.5e-51 2.2e-49 160.0 0.0 7 242 21 283 16 317 0.89 # 23203 # 24240 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.387 1_7 - 207 VirC1 PF07015.6 231 4.6e-15 47.5 0.2 1 1 1.5e-16 9.1e-15 46.5 0.2 1 131 1 123 1 174 0.79 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 Fer4_NifH PF00142.13 273 9.6e-07 20.4 0.0 1 1 2.8e-08 1.7e-06 19.6 0.0 8 64 10 66 3 89 0.90 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_10 - 288 adh_short PF00106.20 167 1.2e-33 108.6 0.3 1 2 8.5e-35 5.2e-33 106.5 0.1 3 165 11 171 9 173 0.93 # 6047 # 6910 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 2_10 - 288 adh_short PF00106.20 167 1.2e-33 108.6 0.3 2 2 0.047 2.9 -0.0 0.0 66 110 227 274 205 279 0.66 # 6047 # 6910 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_7 - 207 CbiA PF01656.18 195 6.4e-29 92.9 1.6 1 1 2.7e-30 1.6e-28 91.6 1.6 1 142 4 123 4 163 0.77 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_10 - 288 KR PF08659.5 181 3.2e-13 41.9 0.1 1 1 1.2e-14 7.4e-13 40.7 0.1 4 167 12 172 10 185 0.86 # 6047 # 6910 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_37 - 612 TraG-D_C PF12696.2 128 4e-29 93.3 0.1 1 1 1.5e-30 8.9e-29 92.2 0.0 2 127 416 534 415 535 0.87 # 24245 # 26080 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.401 1_7 - 207 AAA_31 PF13614.1 157 1.1e-08 27.4 0.3 1 2 9.4e-09 5.7e-07 21.8 0.0 1 39 2 40 2 57 0.93 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 AAA_31 PF13614.1 157 1.1e-08 27.4 0.3 2 2 0.0047 0.28 3.3 0.0 115 152 74 109 58 114 0.83 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 NTPase_1 PF03266.10 168 0.00023 13.1 0.1 1 1 1.1e-05 0.00069 11.5 0.0 7 58 10 66 5 94 0.80 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_36 - 346 AAA_33 PF13671.1 143 0.00069 11.7 0.0 1 2 0.0034 0.21 3.7 0.0 7 77 98 172 95 174 0.72 # 23203 # 24240 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.387 1_36 - 346 AAA_33 PF13671.1 143 0.00069 11.7 0.0 2 2 0.00032 0.019 7.0 0.0 3 21 169 187 168 227 0.82 # 23203 # 24240 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.387 1_7 - 207 AAA_30 PF13604.1 196 0.00021 13.1 0.4 1 1 7.4e-06 0.00045 12.0 0.1 26 106 10 88 2 97 0.75 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_10 - 288 RmlD_sub_bind PF04321.12 287 0.00046 11.3 0.0 1 1 1.4e-05 0.00083 10.5 0.0 3 69 11 100 8 123 0.84 # 6047 # 6910 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 2_10 - 288 NAD_binding_10 PF13460.1 183 1.1e-05 17.7 0.0 1 1 3.4e-07 2.1e-05 16.8 0.0 3 145 13 186 12 213 0.71 # 6047 # 6910 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_29 - 920 AAA_10 PF12846.2 304 1.9e-33 108.3 0.0 1 1 1.2e-34 3.7e-33 107.4 0.0 3 297 539 828 538 834 0.86 # 15292 # 18051 # 1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.445 1_7 - 207 AAA_10 PF12846.2 304 8e-06 17.6 0.0 1 1 4.7e-07 1.4e-05 16.8 0.0 11 47 12 50 10 69 0.82 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 2_10 - 288 adh_short_C2 PF13561.1 241 2.2e-19 62.4 0.0 1 1 4.6e-21 2.8e-19 62.0 0.0 5 182 17 188 15 220 0.90 # 6047 # 6910 # -1 # ID=2_10;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_36 - 346 DEAD PF00270.24 169 9.5e-05 14.1 0.1 1 1 4.8e-06 0.00029 12.5 0.1 6 32 156 183 152 230 0.78 # 23203 # 24240 # 1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=4Base/6BMM;rbs_spacer=13-15bp;gc_cont=0.387 1_37 - 612 TrwB_AAD_bind PF10412.4 386 6.8e-23 73.0 0.0 1 1 1.6e-24 9.7e-23 72.5 0.0 128 380 294 548 281 552 0.83 # 24245 # 26080 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.401 1_37 - 612 T4SS-DNA_transf PF02534.9 469 4.1e-161 528.8 0.0 1 1 7.8e-163 4.8e-161 528.6 0.0 2 468 102 581 101 582 0.98 # 24245 # 26080 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.401 1_7 - 207 ArgK PF03308.11 267 6.7e-05 13.9 0.0 1 1 2.5e-06 0.00016 12.7 0.0 39 72 12 45 5 53 0.90 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 AAA_24 PF13479.1 213 0.00038 12.3 0.6 1 2 1.7e-05 0.001 10.9 0.1 12 88 11 95 3 99 0.81 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_7 - 207 AAA_24 PF13479.1 213 0.00038 12.3 0.6 2 2 0.078 4.7 -1.1 0.0 168 206 118 156 115 164 0.79 # 3303 # 3923 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.461 1_25 - 164 TIGR00922 TIGR00922 172 2.5e-08 25.9 0.0 1 1 1.5e-09 9e-08 24.0 0.0 55 104 51 100 3 114 0.88 # 13634 # 14125 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.435 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/5695ac11-f3c0-4bf3-abf0-e8dae7a0b301 # Target file: checkm_output/bins/pm928/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm928/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/5695ac11-f3c0-4bf3-abf0-e8dae7a0b301 checkm_output/bins/pm928/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:13 2020 # [ok]