# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_6 - 221 MipZ PF09140.6 261 3.4e-13 40.3 1.1 1 1 5.1e-12 1.4e-10 31.7 1.1 3 127 5 108 3 132 0.78 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 YhjQ PF06564.7 244 5.2e-05 13.7 0.1 1 2 0.00016 0.0042 7.5 0.1 10 39 11 40 3 52 0.85 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 YhjQ PF06564.7 244 5.2e-05 13.7 0.1 2 2 0.0013 0.035 4.4 0.0 102 150 66 112 44 149 0.84 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 ATP_bind_1 PF03029.12 238 0.00015 12.4 0.3 1 1 0.00012 0.0034 8.0 0.3 6 42 13 49 11 117 0.75 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 SRP54 PF00448.17 196 5.8e-07 20.1 1.3 1 1 4.6e-08 1.2e-06 19.1 0.3 11 98 13 94 3 134 0.78 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 AAA_17 PF13207.1 121 0.00018 13.5 0.0 1 1 1.2e-05 0.00032 12.6 0.0 9 98 13 110 12 215 0.77 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 MobB PF03205.9 140 7.9e-07 19.9 0.4 1 2 8.1e-06 0.00022 12.0 0.1 10 38 13 41 5 51 0.87 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 MobB PF03205.9 140 7.9e-07 19.9 0.4 2 2 0.0006 0.016 6.0 0.0 44 76 85 120 70 133 0.80 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 ArsA_ATPase PF02374.10 305 6.2e-08 23.0 0.1 1 1 3.1e-09 8.4e-08 22.6 0.1 4 39 6 41 3 86 0.89 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 AAA_26 PF13500.1 199 0.00029 11.5 1.7 1 2 0.00012 0.0034 8.0 0.4 2 36 4 38 3 45 0.90 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 AAA_26 PF13500.1 199 0.00029 11.5 1.7 2 2 0.0094 0.26 1.9 0.0 128 128 108 108 49 178 0.60 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 VirC1 PF07015.6 231 2.1e-08 24.5 0.3 1 2 2e-09 5.4e-08 23.2 0.1 6 55 7 56 3 61 0.92 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 VirC1 PF07015.6 231 2.1e-08 24.5 0.3 2 2 0.087 2.3 -1.8 0.0 121 154 117 150 80 165 0.66 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 Fer4_NifH PF00142.13 273 1.4e-07 22.0 0.6 1 1 7.6e-09 2.1e-07 21.4 0.5 8 43 11 46 6 92 0.87 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 AAA_18 PF13238.1 129 5e-06 17.9 0.0 1 1 3e-07 8.1e-06 17.3 0.0 8 94 13 103 12 113 0.80 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 CbiA PF01656.18 195 1.3e-19 61.4 0.2 1 1 9.1e-21 2.5e-19 60.5 0.2 3 168 7 156 5 177 0.76 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 AAA_31 PF13614.1 157 6e-06 17.3 0.2 1 2 1.2e-05 0.00032 11.7 0.1 3 41 5 43 4 57 0.87 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 AAA_31 PF13614.1 157 6e-06 17.3 0.2 2 2 0.0041 0.11 3.5 0.0 111 151 73 112 63 114 0.85 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 ArgK PF03308.11 267 0.00014 11.7 0.1 1 2 4.7e-05 0.0013 8.6 0.1 38 66 12 40 4 46 0.89 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 ArgK PF03308.11 267 0.00014 11.7 0.1 2 2 0.012 0.32 0.7 0.0 133 199 67 133 61 151 0.56 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 1_6 - 221 GTP_EFTU PF00009.22 188 3.3e-09 27.5 0.1 1 1 1.5e-10 3.9e-09 27.2 0.1 15 115 15 123 12 209 0.73 # 3623 # 4285 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.454 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/8eac4a93-4314-4ffa-bcce-c9febab05743 # Target file: checkm_output/bins/pm927/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm927/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/8eac4a93-4314-4ffa-bcce-c9febab05743 checkm_output/bins/pm927/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:12 2020 # [ok]