# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_103 - 234 UPF0020 PF01170.13 180 5.7e-06 19.5 0.0 1 2 0.00011 0.0083 9.2 0.0 103 120 17 34 5 75 0.83 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_103 - 234 UPF0020 PF01170.13 180 5.7e-06 19.5 0.0 2 2 0.00019 0.015 8.4 0.0 28 51 170 193 165 227 0.75 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_113 - 676 UPF0020 PF01170.13 180 0.00036 13.7 0.1 1 2 0.00022 0.017 8.2 0.1 31 45 209 223 201 230 0.88 # 92672 # 94699 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_113 - 676 UPF0020 PF01170.13 180 0.00036 13.7 0.1 2 2 0.01 0.81 2.7 0.0 106 125 292 311 272 318 0.79 # 92672 # 94699 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_73 - 255 IstB_IS21 PF01695.12 178 3.4e-57 186.2 0.0 1 1 3.2e-59 5e-57 185.7 0.0 2 177 55 231 54 232 0.98 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_110 - 209 MipZ PF09140.6 261 2.6e-21 69.3 0.5 1 2 1.2e-12 1.8e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 MipZ PF09140.6 261 2.6e-21 69.3 0.5 2 2 1.6e-12 2.5e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 YhjQ PF06564.7 244 3.6e-05 16.7 0.3 1 2 1.8e-06 0.00028 13.8 0.3 4 38 3 37 1 50 0.89 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 YhjQ PF06564.7 244 3.6e-05 16.7 0.3 2 2 0.029 4.6 0.0 0.0 108 144 69 103 44 113 0.78 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_94 - 181 SSB PF00436.20 104 5.6e-42 135.4 0.3 1 1 4.5e-44 7.1e-42 135.1 0.3 1 99 6 105 6 113 0.96 # 78015 # 78557 # -1 # ID=1_94;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.617 1_21 - 1753 UvrD_C_2 PF13538.1 104 8.2e-08 25.9 0.3 1 1 3e-09 4.8e-07 23.5 0.1 3 102 1339 1442 1335 1444 0.77 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_115 - 1086 DEAD_2 PF06733.10 174 0.0014 11.6 0.2 1 1 2.3e-05 0.0036 10.3 0.0 122 156 412 444 404 454 0.86 # 95350 # 98607 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_7 - 272 Usp PF00582.21 140 8.2e-28 90.9 0.2 1 2 6.3e-21 9.8e-19 61.5 0.2 1 140 1 152 1 152 0.91 # 4627 # 5442 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.632 1_7 - 272 Usp PF00582.21 140 8.2e-28 90.9 0.2 2 2 4.7e-09 7.3e-07 23.0 0.0 49 134 197 269 158 271 0.70 # 4627 # 5442 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.632 1_39 - 880 DUF87 PF01935.12 229 4e-06 20.3 0.0 1 1 1.3e-07 2e-05 18.0 0.0 26 223 484 675 479 681 0.77 # 36583 # 39222 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.566 1_73 - 255 AAA_22 PF13401.1 131 2.3e-05 18.1 0.6 1 2 8.8e-05 0.0069 10.1 0.0 5 26 102 123 98 137 0.86 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 AAA_22 PF13401.1 131 2.3e-05 18.1 0.6 2 2 0.0019 0.15 5.7 0.1 70 112 144 192 127 206 0.68 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_21 - 1753 AAA_22 PF13401.1 131 0.00032 14.4 0.1 1 2 0.011 0.89 3.2 0.0 89 121 504 535 467 537 0.72 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 1753 AAA_22 PF13401.1 131 0.00032 14.4 0.1 2 2 0.00079 0.062 7.0 0.0 3 28 985 1010 982 1063 0.79 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_75 - 131 Methyltransf_11 PF08241.7 95 5.2e-06 20.5 0.0 1 1 5.4e-08 8.4e-06 19.8 0.0 52 95 10 53 6 53 0.92 # 63222 # 63614 # 1 # ID=1_75;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_110 - 209 SRP54 PF00448.17 196 3.9e-07 23.2 0.1 1 1 1.5e-08 2.3e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_128 - 576 AAA_15 PF13175.1 415 9e-12 38.2 0.0 1 2 1.2e-07 1.8e-05 17.4 0.0 1 45 4 47 4 93 0.87 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_128 - 576 AAA_15 PF13175.1 415 9e-12 38.2 0.0 2 2 4.2e-08 6.6e-06 18.9 0.0 318 414 232 320 176 321 0.80 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_103 - 234 N6_N4_Mtase PF01555.13 231 8.6e-33 107.2 0.0 1 2 3.3e-13 5.1e-11 36.0 0.0 1 113 21 130 21 137 0.85 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_103 - 234 N6_N4_Mtase PF01555.13 231 8.6e-33 107.2 0.0 2 2 2e-23 3.1e-21 69.4 0.0 170 227 149 206 135 210 0.92 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_110 - 209 AAA_17 PF13207.1 121 3.4e-05 18.2 0.0 1 1 8.5e-07 6.6e-05 17.3 0.0 9 77 11 84 9 205 0.76 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_73 - 255 AAA_17 PF13207.1 121 6.3e-05 17.4 0.0 1 1 1.7e-06 0.00013 16.3 0.0 2 78 104 175 103 234 0.64 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_128 - 576 AAA_21 PF13304.1 303 2.1e-22 73.9 0.0 1 1 3.9e-24 3e-22 73.4 0.0 1 302 26 321 26 322 0.91 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_125 - 935 AAA_21 PF13304.1 303 1.6e-06 21.7 0.6 1 1 5.9e-08 4.6e-06 20.3 0.1 219 302 734 858 608 859 0.65 # 105131 # 107935 # -1 # ID=1_125;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_110 - 209 MobB PF03205.9 140 9.2e-05 15.7 0.1 1 1 1.6e-06 0.00025 14.3 0.0 10 42 11 41 1 46 0.79 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 ArsA_ATPase PF02374.10 305 4.8e-08 25.8 0.4 1 2 1.2e-09 1.8e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 ArsA_ATPase PF02374.10 305 4.8e-08 25.8 0.4 2 2 0.053 8.3 -1.2 0.0 121 135 69 85 47 86 0.75 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_73 - 255 AFG1_ATPase PF03969.11 362 1.3e-05 17.6 0.0 1 1 1e-07 1.6e-05 17.4 0.0 25 207 60 242 36 252 0.75 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_128 - 576 SMC_N PF02463.14 220 3.7e-12 39.4 0.0 1 2 2.6e-11 2e-09 30.5 0.0 2 55 4 55 3 64 0.89 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_128 - 576 SMC_N PF02463.14 220 3.7e-12 39.4 0.0 2 2 0.00049 0.038 6.7 0.0 161 205 278 324 256 336 0.84 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_125 - 935 SMC_N PF02463.14 220 1.3e-08 27.8 0.6 1 2 0.0029 0.22 4.2 0.0 20 42 324 346 318 364 0.85 # 105131 # 107935 # -1 # ID=1_125;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_125 - 935 SMC_N PF02463.14 220 1.3e-08 27.8 0.6 2 2 1.2e-08 9.4e-07 21.8 0.2 74 215 441 871 409 876 0.84 # 105131 # 107935 # -1 # ID=1_125;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_110 - 209 VirC1 PF07015.6 231 4.3e-09 29.3 0.0 1 1 5.9e-11 9.3e-09 28.2 0.0 3 172 2 164 1 206 0.75 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 Fer4_NifH PF00142.13 273 0.00012 14.9 0.0 1 1 2.3e-06 0.00036 13.3 0.0 8 38 9 39 2 46 0.89 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_73 - 255 Arch_ATPase PF01637.13 234 8.6e-05 15.8 0.1 1 2 3.5e-05 0.0054 9.9 0.0 14 59 97 140 88 151 0.81 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 Arch_ATPase PF01637.13 234 8.6e-05 15.8 0.1 2 2 0.0018 0.28 4.3 0.1 103 153 150 193 138 202 0.65 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_22 - 764 AAA_16 PF13191.1 185 2.1e-06 21.4 0.1 1 1 4.2e-07 2.2e-05 18.1 0.0 20 56 181 218 179 254 0.78 # 20553 # 22844 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_115 - 1086 AAA_16 PF13191.1 185 1.1e-05 19.1 0.1 1 2 6.6e-06 0.00034 14.1 0.0 5 175 297 459 294 467 0.69 # 95350 # 98607 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_115 - 1086 AAA_16 PF13191.1 185 1.1e-05 19.1 0.1 2 2 0.041 2.2 1.8 0.0 31 160 459 596 456 621 0.52 # 95350 # 98607 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_73 - 255 AAA_16 PF13191.1 185 2.3e-05 18.0 3.2 1 2 6.6e-06 0.00034 14.1 0.1 22 46 99 123 82 139 0.80 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 AAA_16 PF13191.1 185 2.3e-05 18.0 3.2 2 2 0.011 0.58 3.6 0.1 132 165 142 177 135 199 0.61 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_128 - 576 AAA_23 PF13476.1 202 4.6e-13 43.5 0.0 1 1 8.2e-15 6.4e-13 43.0 0.0 2 104 7 99 6 222 0.76 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_125 - 935 AAA_23 PF13476.1 202 2.9e-06 21.2 3.6 1 1 3.8e-08 2.9e-06 21.2 3.6 10 195 319 578 315 584 0.69 # 105131 # 107935 # -1 # ID=1_125;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.503 1_110 - 209 CbiA PF01656.18 195 3.8e-22 72.2 0.0 1 1 4.7e-24 7.4e-22 71.2 0.0 1 154 3 137 3 178 0.78 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_128 - 576 AAA_29 PF13555.1 62 1.2e-07 24.8 0.0 1 1 3e-09 2.4e-07 23.8 0.0 23 55 25 56 4 60 0.73 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_73 - 255 AAA_29 PF13555.1 62 3.4e-05 16.9 0.0 1 1 9.2e-07 7.2e-05 15.9 0.0 21 56 99 135 90 139 0.79 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 AAA PF00004.24 132 5.7e-06 20.1 0.0 1 1 7.9e-08 1.2e-05 19.0 0.0 1 74 104 178 104 225 0.74 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 Bac_DnaA PF00308.13 219 1.9e-10 34.3 0.0 1 1 1.8e-12 2.7e-10 33.7 0.0 36 137 103 201 78 209 0.88 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 Sigma54_activat PF00158.21 168 0.00059 12.9 0.0 1 1 6.7e-06 0.001 12.1 0.0 12 44 92 123 82 147 0.76 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_113 - 676 N6_Mtase PF02384.11 311 2e-52 171.7 0.0 1 1 4e-54 3.1e-52 171.1 0.0 5 275 155 460 152 472 0.84 # 92672 # 94699 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_58 - 274 N6_Mtase PF02384.11 311 4.7e-12 39.1 0.0 1 1 9.7e-14 7.5e-12 38.4 0.0 25 117 139 237 130 267 0.85 # 51327 # 52148 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_73 - 255 DUF258 PF03193.11 161 0.00088 12.0 0.0 1 1 9.1e-06 0.0014 11.3 0.0 15 57 80 123 70 152 0.83 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_22 - 764 TraG-D_C PF12696.2 128 1.1e-19 64.2 0.0 1 1 1.5e-21 2.4e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 20553 # 22844 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_110 - 209 AAA_31 PF13614.1 157 6.6e-06 19.7 0.0 1 2 2.5e-07 3.9e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 AAA_31 PF13614.1 157 6.6e-06 19.7 0.0 2 2 0.055 8.5 -0.2 0.0 109 127 68 86 62 113 0.68 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_103 - 234 Methyltransf_26 PF13659.1 117 4.2e-11 36.5 0.2 1 2 9.7e-07 5e-05 16.9 0.0 63 113 13 70 3 86 0.73 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_103 - 234 Methyltransf_26 PF13659.1 117 4.2e-11 36.5 0.2 2 2 5.9e-07 3.1e-05 17.6 0.1 4 44 174 213 171 228 0.80 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_113 - 676 Methyltransf_26 PF13659.1 117 1.9e-08 27.9 0.0 1 1 8.4e-10 4.4e-08 26.7 0.0 4 88 210 310 208 391 0.75 # 92672 # 94699 # 1 # ID=1_113;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.569 1_58 - 274 Methyltransf_26 PF13659.1 117 7.5e-05 16.3 0.1 1 1 3.6e-06 0.00019 15.0 0.1 3 70 171 243 170 269 0.81 # 51327 # 52148 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.557 1_21 - 1753 AAA_30 PF13604.1 196 4e-45 147.3 6.6 1 2 9.3e-07 7.3e-05 15.9 1.0 9 126 423 535 421 560 0.86 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 1753 AAA_30 PF13604.1 196 4e-45 147.3 6.6 2 2 1.5e-42 1.2e-40 132.7 0.4 2 186 970 1157 969 1161 0.94 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_73 - 255 AAA_30 PF13604.1 196 1.7e-05 18.0 0.0 1 1 7.5e-07 5.8e-05 16.2 0.0 12 111 96 180 82 194 0.77 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_39 - 880 FtsK_SpoIIIE PF01580.13 205 0.00019 14.5 0.0 1 1 2.7e-06 0.00042 13.3 0.0 39 63 480 506 466 508 0.85 # 36583 # 39222 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.566 1_128 - 576 DUF2813 PF11398.3 373 1.3e-05 17.9 0.0 1 1 1.6e-07 2.4e-05 17.0 0.0 3 65 4 66 2 100 0.87 # 109947 # 111674 # -1 # ID=1_128;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.495 1_73 - 255 ABC_tran PF00005.22 137 0.00011 16.0 0.0 1 1 1.6e-06 0.00025 14.9 0.0 8 36 98 126 95 160 0.84 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_103 - 234 Cons_hypoth95 PF03602.10 183 4.7e-06 19.6 0.0 1 2 0.00012 0.019 7.8 0.0 113 170 19 78 12 86 0.73 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_103 - 234 Cons_hypoth95 PF03602.10 183 4.7e-06 19.6 0.0 2 2 3.1e-05 0.0049 9.8 0.0 20 60 149 188 142 225 0.73 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_73 - 255 RuvB_N PF05496.7 234 0.00011 14.9 0.0 1 1 1.1e-06 0.00017 14.2 0.0 50 115 101 176 71 188 0.72 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_21 - 1753 AAA_19 PF13245.1 76 1.6e-06 21.3 1.9 1 1 6.8e-08 3.5e-06 20.3 0.5 8 74 983 1046 975 1049 0.71 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_127 - 472 AAA_19 PF13245.1 76 1.6e-05 18.2 0.3 1 1 5.1e-06 0.00027 14.3 0.3 11 62 11 55 3 74 0.76 # 108535 # 109950 # -1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_110 - 209 AAA_19 PF13245.1 76 0.00088 12.6 0.1 1 2 0.00029 0.015 8.6 0.0 20 48 11 35 9 44 0.84 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_110 - 209 AAA_19 PF13245.1 76 0.00088 12.6 0.1 2 2 0.067 3.5 1.1 0.0 42 62 135 155 118 180 0.75 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_39 - 880 AAA_10 PF12846.2 304 2.3e-46 152.1 0.0 1 1 9.3e-48 3.6e-46 151.4 0.0 1 294 481 773 481 779 0.87 # 36583 # 39222 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.566 1_22 - 764 AAA_10 PF12846.2 304 3.3e-09 30.1 0.0 1 1 2.4e-08 9.5e-07 22.0 0.0 3 296 187 494 186 499 0.63 # 20553 # 22844 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_73 - 255 AAA_10 PF12846.2 304 1.2e-05 18.4 0.0 1 1 4.9e-07 1.9e-05 17.7 0.0 3 33 103 133 101 174 0.88 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_110 - 209 AAA_10 PF12846.2 304 0.00025 14.1 0.0 1 1 1e-05 0.00039 13.4 0.0 11 39 11 39 3 67 0.90 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_130 - 191 NodS PF05401.6 201 0.0012 11.8 0.0 1 2 0.055 8.5 -0.8 0.0 42 154 34 59 20 67 0.62 # 112365 # 112937 # 1 # ID=1_130;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 1_130 - 191 NodS PF05401.6 201 0.0012 11.8 0.0 2 2 2.7e-05 0.0042 10.0 0.0 26 70 100 144 86 172 0.83 # 112365 # 112937 # 1 # ID=1_130;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 1_115 - 1086 ResIII PF04851.10 184 3e-14 46.8 1.4 1 2 1.5e-15 1.1e-13 44.9 0.1 3 183 295 498 293 499 0.77 # 95350 # 98607 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_115 - 1086 ResIII PF04851.10 184 3e-14 46.8 1.4 2 2 0.074 5.7 0.2 0.1 138 158 655 675 587 708 0.72 # 95350 # 98607 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_127 - 472 ResIII PF04851.10 184 0.0013 12.1 0.0 1 1 3e-05 0.0023 11.3 0.0 26 70 10 55 4 72 0.78 # 108535 # 109950 # -1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_75 - 131 Methyltransf_31 PF13847.1 152 0.00093 12.3 0.0 1 1 6.3e-06 0.00099 12.3 0.0 69 114 12 59 7 110 0.80 # 63222 # 63614 # 1 # ID=1_75;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.565 1_127 - 472 Viral_helicase1 PF01443.13 234 8.7e-12 38.5 0.0 1 3 1.3e-05 0.002 11.2 0.0 5 38 16 54 12 78 0.65 # 108535 # 109950 # -1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_127 - 472 Viral_helicase1 PF01443.13 234 8.7e-12 38.5 0.0 2 3 2.6e-08 4e-06 20.0 0.0 62 123 121 179 113 196 0.85 # 108535 # 109950 # -1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_127 - 472 Viral_helicase1 PF01443.13 234 8.7e-12 38.5 0.0 3 3 0.003 0.46 3.4 0.0 215 233 445 463 425 464 0.81 # 108535 # 109950 # -1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_73 - 255 DUF815 PF05673.8 250 1.1e-07 24.5 0.0 1 1 9.9e-10 1.5e-07 24.0 0.0 52 124 100 179 64 202 0.76 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_22 - 764 TrwB_AAD_bind PF10412.4 386 1.4e-148 488.1 0.0 1 1 2.4e-150 1.9e-148 487.7 0.0 2 386 172 561 171 561 0.99 # 20553 # 22844 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_39 - 880 TrwB_AAD_bind PF10412.4 386 2.2e-05 16.7 0.1 1 1 7.5e-07 5.8e-05 15.3 0.0 16 94 482 556 474 569 0.72 # 36583 # 39222 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.566 1_21 - 1753 AAA_11 PF13086.1 236 1.7e-05 18.0 0.1 1 2 9.3e-07 0.00014 15.0 0.0 2 72 970 1037 969 1064 0.82 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_21 - 1753 AAA_11 PF13086.1 236 1.7e-05 18.0 0.1 2 2 0.068 11 -1.0 0.0 3 34 1181 1211 1179 1320 0.72 # 15295 # 20553 # -1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.618 1_22 - 764 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.6 0.0 1 2 0.079 12 -2.3 0.0 130 199 262 330 253 360 0.69 # 20553 # 22844 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_22 - 764 T4SS-DNA_transf PF02534.9 469 2.1e-08 26.6 0.0 2 2 3.3e-10 5.1e-08 25.4 0.0 274 393 392 507 361 559 0.74 # 20553 # 22844 # -1 # ID=1_22;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.563 1_39 - 880 Pox_A32 PF04665.7 241 0.00011 15.0 0.0 1 1 1.5e-06 0.00024 14.0 0.0 6 40 474 508 470 523 0.82 # 36583 # 39222 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.566 1_73 - 255 RNA_helicase PF00910.17 107 2.8e-05 17.8 0.0 1 1 5.8e-07 9.1e-05 16.2 0.0 1 74 104 188 104 191 0.78 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_80 - 143 tRNA_anti-codon PF01336.20 75 6.7e-07 22.7 0.1 1 2 0.037 5.7 0.5 0.0 43 62 67 86 58 90 0.80 # 67657 # 68085 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_80 - 143 tRNA_anti-codon PF01336.20 75 6.7e-07 22.7 0.1 2 2 1.9e-08 2.9e-06 20.6 0.1 3 73 77 140 75 141 0.88 # 67657 # 68085 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_80 - 143 BOF PF04076.8 103 4.7e-24 77.8 0.1 1 1 4.3e-26 6.7e-24 77.3 0.1 7 103 44 141 30 141 0.88 # 67657 # 68085 # 1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.538 1_127 - 472 UvrD-helicase PF00580.16 315 1.4e-12 41.0 0.0 1 2 3.3e-05 0.0051 9.6 0.1 14 67 10 57 3 78 0.76 # 108535 # 109950 # -1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_127 - 472 UvrD-helicase PF00580.16 315 1.4e-12 41.0 0.0 2 2 4.5e-11 7e-09 28.9 0.0 246 304 111 168 97 178 0.87 # 108535 # 109950 # -1 # ID=1_127;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.482 1_73 - 255 NACHT PF05729.7 166 6e-06 19.5 0.7 1 3 0.012 1.9 1.6 0.0 18 70 17 73 15 93 0.78 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 NACHT PF05729.7 166 6e-06 19.5 0.7 2 3 3.2e-05 0.005 10.0 0.3 3 27 104 128 102 153 0.80 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 NACHT PF05729.7 166 6e-06 19.5 0.7 3 3 0.0011 0.17 5.1 0.0 76 128 150 203 134 220 0.73 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 AAA_25 PF13481.1 194 4.7e-06 19.6 0.2 1 1 1.5e-07 1.2e-05 18.4 0.1 28 60 96 129 71 194 0.78 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_110 - 209 AAA_25 PF13481.1 194 0.00021 14.3 0.1 1 1 6.2e-06 0.00048 13.1 0.0 42 87 10 44 3 90 0.78 # 90367 # 90993 # 1 # ID=1_110;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.451 1_103 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 1 2 0.023 3.6 0.6 0.0 53 80 4 30 2 38 0.91 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_103 - 234 Methyltransf_15 PF09445.5 164 0.0012 12.0 0.0 2 2 7e-05 0.011 8.8 0.0 3 30 173 200 171 213 0.90 # 83436 # 84137 # -1 # ID=1_103;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_115 - 1086 SNF2_N PF00176.18 299 0.00055 12.3 0.1 1 1 7.6e-06 0.0012 11.2 0.1 1 159 299 459 299 469 0.70 # 95350 # 98607 # 1 # ID=1_115;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.553 1_73 - 255 APS_kinase PF01583.15 157 0.0014 11.8 0.3 1 2 5e-05 0.0079 9.4 0.0 4 45 103 144 100 153 0.83 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 1_73 - 255 APS_kinase PF01583.15 157 0.0014 11.8 0.3 2 2 0.047 7.3 -0.2 0.0 32 76 154 198 137 208 0.72 # 60709 # 61473 # -1 # ID=1_73;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.573 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/fa7ab11d-2951-4223-a0f4-13de44ffa450 # Target file: checkm_output/bins/pm917/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm917/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/fa7ab11d-2951-4223-a0f4-13de44ffa450 checkm_output/bins/pm917/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:09 2020 # [ok]