# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_16 - 311 Mg_chelatase PF01078.16 207 0.0003 13.2 0.0 1 1 8.3e-06 0.001 11.4 0.0 20 45 58 83 45 101 0.85 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_65 - 226 UPF0020 PF01170.13 180 2.2e-06 20.5 0.0 1 2 8.8e-05 0.011 8.5 0.0 102 122 16 36 3 88 0.72 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_65 - 226 UPF0020 PF01170.13 180 2.2e-06 20.5 0.0 2 2 2.9e-05 0.0037 10.1 0.0 27 54 162 188 158 216 0.72 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 311 Rad17 PF03215.10 519 0.00058 11.8 0.0 1 2 5.4e-05 0.0068 8.3 0.0 47 68 62 83 39 87 0.77 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 Rad17 PF03215.10 519 0.00058 11.8 0.0 2 2 0.0074 0.93 1.2 0.0 149 199 131 180 116 184 0.75 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 IstB_IS21 PF01695.12 178 0.00082 12.0 0.0 1 1 6.9e-06 0.00086 12.0 0.0 45 65 3 23 2 44 0.89 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_71 - 402 MipZ PF09140.6 261 6.7e-06 18.5 0.5 1 2 3.1e-05 0.0038 9.5 0.1 1 50 110 164 110 191 0.74 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 402 MipZ PF09140.6 261 6.7e-06 18.5 0.5 2 2 0.00021 0.027 6.7 0.0 90 135 237 282 227 287 0.89 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 2_11 - 131 Methyltransf_18 PF12847.2 112 1.6e-05 18.7 0.0 1 1 1.7e-07 2.2e-05 18.3 0.0 26 90 3 63 2 81 0.78 # 7593 # 7985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_15 - 1747 UvrD_C_2 PF13538.1 104 3.2e-06 20.5 0.1 1 1 2.3e-07 2.9e-05 17.4 0.0 3 100 1337 1438 1335 1442 0.75 # 10843 # 16083 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_32 - 877 DUF87 PF01935.12 229 4.7e-06 19.8 0.0 1 1 1.1e-07 1.3e-05 18.3 0.0 26 215 482 664 480 677 0.59 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_35 - 62 Septin PF00735.13 281 0.0003 13.0 0.0 1 1 2.4e-06 0.0003 13.0 0.0 5 33 6 34 3 60 0.66 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 AAA_22 PF13401.1 131 5.5e-21 68.3 0.0 1 1 2.2e-22 1.4e-20 67.0 0.0 3 125 59 190 57 196 0.89 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 AAA_22 PF13401.1 131 0.00016 15.1 0.1 1 1 4.1e-06 0.00026 14.4 0.1 4 33 5 34 2 61 0.77 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_65 - 226 Methyltransf_11 PF08241.7 95 0.00072 13.3 0.0 1 3 0.045 5.6 0.8 0.0 46 65 4 25 2 28 0.77 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_65 - 226 Methyltransf_11 PF08241.7 95 0.00072 13.3 0.0 2 3 0.0023 0.29 5.0 0.0 78 93 53 68 46 70 0.85 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_65 - 226 Methyltransf_11 PF08241.7 95 0.00072 13.3 0.0 3 3 0.0066 0.82 3.5 0.0 5 41 172 207 168 223 0.74 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 2_21 - 229 DNA_methylase PF00145.12 335 1.2e-09 30.9 0.0 1 1 1.1e-11 1.4e-09 30.7 0.0 284 333 160 215 116 217 0.85 # 16836 # 17522 # 1 # ID=2_21;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.680 1_65 - 226 N6_N4_Mtase PF01555.13 231 3.7e-37 121.2 0.0 1 1 3.1e-37 3.9e-35 114.6 0.0 1 228 21 200 21 203 0.91 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 311 AAA_17 PF13207.1 121 0.00029 14.9 0.0 1 1 3.1e-05 0.002 12.2 0.0 2 26 63 87 62 299 0.84 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 AAA_17 PF13207.1 121 0.00037 14.5 0.4 1 1 8.8e-06 0.00055 14.0 0.4 2 23 8 29 7 60 0.69 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_35 - 62 Miro PF08477.8 119 0.00021 15.0 0.0 1 1 1.7e-06 0.00021 15.0 0.0 1 21 7 27 7 57 0.79 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_35 - 62 MobB PF03205.9 140 8.9e-06 18.7 0.0 1 1 7.8e-08 9.7e-06 18.6 0.0 3 48 8 53 6 59 0.72 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_71 - 402 ArsA_ATPase PF02374.10 305 0.0004 12.7 0.1 1 1 8.3e-06 0.001 11.3 0.0 4 136 113 255 110 257 0.68 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 62 PhoH PF02562.11 205 3.7e-05 16.2 0.0 1 1 3e-07 3.7e-05 16.2 0.0 18 52 4 38 1 60 0.79 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 MCM PF00493.18 331 4.7e-05 15.5 0.0 1 2 1.3e-06 0.00016 13.8 0.0 52 81 55 84 28 88 0.85 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 MCM PF00493.18 331 4.7e-05 15.5 0.0 2 2 0.068 8.5 -1.8 0.0 124 145 149 170 142 193 0.84 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 T2SE PF00437.15 272 2.7e-05 16.3 0.0 1 1 2.3e-07 2.9e-05 16.3 0.0 127 150 4 27 2 43 0.79 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_71 - 402 Methyltransf_24 PF13578.1 106 0.0004 14.5 0.0 1 1 1.9e-05 0.0023 12.0 0.0 4 79 120 255 117 271 0.64 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 62 Zeta_toxin PF06414.7 201 0.00015 14.1 0.4 1 2 4.7e-06 0.0003 13.1 0.2 15 40 4 29 2 47 0.85 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_35 - 62 Zeta_toxin PF06414.7 201 0.00015 14.1 0.4 2 2 0.039 2.4 0.4 0.0 142 164 36 60 22 61 0.56 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_16 - 749 Zeta_toxin PF06414.7 201 0.0009 11.6 0.0 1 2 8.6e-05 0.0054 9.0 0.0 21 51 190 220 182 262 0.83 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_16 - 749 Zeta_toxin PF06414.7 201 0.0009 11.6 0.0 2 2 0.077 4.8 -0.6 0.0 54 90 283 320 279 337 0.87 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_35 - 62 SMC_N PF02463.14 220 0.00052 12.5 0.0 1 1 4.2e-06 0.00053 12.5 0.0 26 58 7 40 2 56 0.77 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_71 - 402 Fer4_NifH PF00142.13 273 4.1e-06 19.3 0.0 1 1 6.9e-08 8.6e-06 18.3 0.0 7 72 117 187 112 195 0.80 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 2_16 - 311 Arch_ATPase PF01637.13 234 5e-06 19.6 0.0 1 2 5e-06 0.00063 12.7 0.0 10 45 51 85 45 98 0.78 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 Arch_ATPase PF01637.13 234 5e-06 19.6 0.0 2 2 0.0014 0.17 4.7 0.0 107 164 136 189 111 202 0.81 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 AAA_16 PF13191.1 185 9.3e-08 25.5 0.0 1 1 1.9e-08 5.8e-07 22.9 0.0 7 86 43 125 39 185 0.66 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_16 - 749 AAA_16 PF13191.1 185 2.2e-06 21.0 0.0 1 1 4.8e-07 1.5e-05 18.3 0.0 20 55 181 225 177 267 0.67 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_35 - 62 AAA_16 PF13191.1 185 0.0002 14.6 0.0 1 1 7.1e-06 0.00022 14.4 0.0 22 51 3 32 1 55 0.79 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_15 - 1747 AAA_16 PF13191.1 185 0.045 6.9 7.4 1 1 0.00033 0.01 9.0 0.0 23 51 982 1010 962 1188 0.81 # 10843 # 16083 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_35 - 62 AAA_18 PF13238.1 129 0.00014 15.4 0.0 1 1 1.2e-06 0.00015 15.3 0.0 1 27 8 42 8 61 0.64 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_71 - 402 CbiA PF01656.18 195 2.4e-23 75.7 0.1 1 2 0.095 6 -0.6 0.1 137 173 57 90 53 107 0.67 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 402 CbiA PF01656.18 195 2.4e-23 75.7 0.1 2 2 1.9e-24 1.2e-22 73.5 0.0 1 148 112 309 112 351 0.70 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 62 CbiA PF01656.18 195 0.0007 12.2 0.0 1 1 1.2e-05 0.00075 12.1 0.0 4 24 10 30 8 48 0.86 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 KaiC PF06745.8 227 0.001 11.4 0.0 1 2 0.0008 0.1 4.9 0.0 20 41 61 82 42 104 0.88 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 KaiC PF06745.8 227 0.001 11.4 0.0 2 2 0.0015 0.18 4.0 0.0 98 153 129 183 115 187 0.81 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 AAA_29 PF13555.1 62 0.00016 14.4 0.2 1 2 3.9e-06 0.00049 12.9 0.1 22 39 4 21 1 29 0.86 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_35 - 62 AAA_29 PF13555.1 62 0.00016 14.4 0.2 2 2 0.063 7.9 -0.6 0.0 1 14 30 43 30 50 0.78 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 AAA PF00004.24 132 7.7e-06 19.4 0.0 1 1 2e-07 2.5e-05 17.7 0.0 1 81 63 168 63 180 0.68 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 Sigma54_activat PF00158.21 168 0.00054 12.7 0.0 1 1 4.4e-06 0.00055 12.6 0.0 21 44 4 27 1 42 0.79 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 TniB PF05621.6 302 4.6e-48 156.7 0.3 1 1 4.5e-50 5.6e-48 156.4 0.3 22 296 18 297 4 302 0.91 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_48 - 277 N6_Mtase PF02384.11 311 4.7e-11 35.4 0.0 1 1 5.4e-13 6.8e-11 34.9 0.0 24 120 137 239 128 255 0.83 # 42457 # 43287 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.554 2_16 - 311 DUF258 PF03193.11 161 0.00043 12.7 0.0 1 1 5.1e-06 0.00063 12.2 0.0 9 57 28 82 20 119 0.72 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_16 - 749 TraG-D_C PF12696.2 128 4.6e-19 61.8 0.0 1 1 2.2e-20 1.4e-18 60.2 0.0 1 127 419 541 419 542 0.85 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_32 - 877 TraG-D_C PF12696.2 128 0.0011 12.1 0.2 1 1 3.5e-05 0.0022 11.1 0.2 18 74 715 771 706 775 0.91 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_71 - 402 AAA_31 PF13614.1 157 4.6e-08 26.3 0.0 1 3 0.04 5 0.2 0.0 44 87 23 65 6 77 0.73 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 402 AAA_31 PF13614.1 157 4.6e-08 26.3 0.0 2 3 1.7e-05 0.0022 11.2 0.0 2 90 111 204 110 219 0.81 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_71 - 402 AAA_31 PF13614.1 157 4.6e-08 26.3 0.0 3 3 2.6e-05 0.0033 10.6 0.0 109 148 237 275 221 280 0.87 # 59723 # 60928 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.448 1_35 - 62 AAA_33 PF13671.1 143 0.00056 13.0 2.2 1 1 1.6e-05 0.002 11.3 2.2 2 31 8 33 8 61 0.63 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_65 - 226 Methyltransf_26 PF13659.1 117 3.9e-13 42.7 0.1 1 2 3.8e-08 2.4e-06 20.8 0.0 53 114 3 71 2 74 0.77 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_65 - 226 Methyltransf_26 PF13659.1 117 3.9e-13 42.7 0.1 2 2 8.1e-08 5e-06 19.8 0.0 4 44 167 206 164 220 0.83 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_48 - 277 Methyltransf_26 PF13659.1 117 0.00073 12.8 0.0 1 1 2.5e-05 0.0016 11.7 0.0 3 83 170 255 168 275 0.75 # 42457 # 43287 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=3-4bp;gc_cont=0.554 2_11 - 131 FmrO PF07091.6 251 1.4e-39 128.7 0.0 1 1 1.4e-41 1.7e-39 128.5 0.0 131 251 4 126 2 126 0.98 # 7593 # 7985 # -1 # ID=2_11;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.397 1_15 - 1747 AAA_30 PF13604.1 196 4.1e-41 133.9 11.4 1 2 0.00025 0.016 8.0 2.7 8 149 419 552 415 559 0.86 # 10843 # 16083 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_15 - 1747 AAA_30 PF13604.1 196 4.1e-41 133.9 11.4 2 2 1.1e-41 6.8e-40 129.9 0.2 2 184 967 1153 966 1159 0.90 # 10843 # 16083 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_34 - 134 AAA_30 PF13604.1 196 0.0003 13.6 0.1 1 2 0.00015 0.0092 8.8 0.0 25 52 5 32 1 39 0.87 # 33729 # 34130 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_34 - 134 AAA_30 PF13604.1 196 0.0003 13.6 0.1 2 2 0.0071 0.44 3.3 0.1 11 64 59 112 41 120 0.77 # 33729 # 34130 # -1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_32 - 877 FtsK_SpoIIIE PF01580.13 205 0.00015 14.5 0.2 1 1 7.5e-06 0.00047 12.9 0.0 39 63 476 504 459 507 0.85 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_35 - 62 FtsK_SpoIIIE PF01580.13 205 0.00027 13.7 1.0 1 1 5.5e-06 0.00034 13.3 0.9 38 54 5 21 2 36 0.84 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_65 - 226 Cons_hypoth95 PF03602.10 183 1.1e-05 18.1 0.0 1 2 0.00022 0.027 7.1 0.0 112 156 18 64 2 82 0.65 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_65 - 226 Cons_hypoth95 PF03602.10 183 1.1e-05 18.1 0.0 2 2 5e-05 0.0062 9.1 0.0 41 62 162 183 145 213 0.80 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_16 - 749 DAP3 PF10236.4 309 0.00018 13.7 0.0 1 1 2.6e-06 0.00033 12.8 0.0 23 72 185 234 170 244 0.85 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 2_16 - 311 RuvB_N PF05496.7 234 0.00013 14.3 0.1 1 2 1.6e-05 0.002 10.4 0.0 12 68 24 78 12 87 0.79 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 RuvB_N PF05496.7 234 0.00013 14.3 0.1 2 2 0.0094 1.2 1.3 0.0 101 115 146 160 92 198 0.78 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_15 - 1747 AAA_19 PF13245.1 76 2.3e-08 27.0 0.1 1 1 2e-09 1.3e-07 24.6 0.1 6 75 978 1045 973 1046 0.78 # 10843 # 16083 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.658 1_35 - 62 AAA_19 PF13245.1 76 0.0011 12.0 0.0 1 1 1.9e-05 0.0012 11.9 0.0 11 37 7 32 3 52 0.80 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_32 - 877 AAA_10 PF12846.2 304 1e-46 152.9 0.0 1 1 5.5e-48 1.7e-46 152.2 0.0 1 294 479 770 479 776 0.88 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_16 - 749 AAA_10 PF12846.2 304 9.4e-09 28.3 0.0 1 1 5.2e-09 1.6e-07 24.2 0.0 3 296 187 494 186 499 0.72 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_35 - 62 AAA_10 PF12846.2 304 0.00041 13.0 0.0 1 1 1.4e-05 0.00043 12.9 0.0 2 27 6 31 5 48 0.85 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 AAA_10 PF12846.2 304 0.00052 12.7 0.1 1 1 0.00012 0.0038 9.8 0.1 3 43 62 112 60 178 0.71 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 ResIII PF04851.10 184 5.6e-05 16.2 0.5 1 1 1.2e-06 7.7e-05 15.8 0.3 24 49 4 29 2 41 0.85 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 ResIII PF04851.10 184 0.00029 13.9 0.0 1 2 0.0014 0.089 5.8 0.0 14 44 47 79 25 103 0.71 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 ResIII PF04851.10 184 0.00029 13.9 0.0 2 2 0.0013 0.08 5.9 0.0 148 166 148 165 124 180 0.80 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 PduV-EutP PF10662.4 143 0.00076 12.2 0.0 1 1 6.7e-06 0.00084 12.1 0.0 3 20 7 24 5 40 0.83 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_35 - 62 DEAD PF00270.24 169 4.9e-05 16.1 0.0 1 1 7.9e-07 4.9e-05 16.1 0.0 14 35 5 26 1 57 0.77 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 DEAD PF00270.24 169 0.00068 12.4 0.0 1 2 0.075 4.7 -0.1 0.0 13 31 59 77 42 103 0.79 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 DEAD PF00270.24 169 0.00068 12.4 0.0 2 2 7.7e-05 0.0048 9.6 0.0 116 143 143 169 129 192 0.70 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 DUF815 PF05673.8 250 0.00032 12.9 0.0 1 1 4.2e-06 0.00053 12.2 0.0 53 74 60 81 16 87 0.77 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_16 - 749 TrwB_AAD_bind PF10412.4 386 3.7e-148 486.4 0.0 1 1 1.1e-149 4.7e-148 486.1 0.0 2 385 172 560 171 561 0.99 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_32 - 877 TrwB_AAD_bind PF10412.4 386 1.7e-06 20.1 0.6 1 1 1.1e-07 4.8e-06 18.6 0.1 17 54 481 518 473 556 0.80 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_35 - 62 TrwB_AAD_bind PF10412.4 386 0.00024 13.0 0.1 1 1 6.2e-06 0.00026 12.9 0.1 14 42 4 32 1 37 0.85 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_15 - 1747 AAA_11 PF13086.1 236 1.1e-06 21.6 0.1 1 1 3e-08 3.8e-06 19.8 0.0 2 72 967 1034 966 1057 0.82 # 10843 # 16083 # -1 # ID=1_15;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.658 2_16 - 311 Sigma54_activ_2 PF14532.1 138 6.5e-07 22.7 0.0 1 2 0.00018 0.023 8.0 0.0 9 46 47 85 39 95 0.73 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 Sigma54_activ_2 PF14532.1 138 6.5e-07 22.7 0.0 2 2 5e-06 0.00063 13.0 0.0 17 96 92 173 90 206 0.87 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_16 - 749 T4SS-DNA_transf PF02534.9 469 1.1e-08 27.3 0.0 1 1 5.9e-10 3.7e-08 25.5 0.0 251 371 363 486 198 521 0.77 # 16083 # 18329 # -1 # ID=1_16;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.579 1_32 - 877 T4SS-DNA_transf PF02534.9 469 0.00063 11.5 0.1 1 2 0.0072 0.45 2.1 0.0 105 181 533 605 470 686 0.79 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_32 - 877 T4SS-DNA_transf PF02534.9 469 0.00063 11.5 0.1 2 2 0.00026 0.016 6.9 0.2 321 378 715 771 703 773 0.94 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_65 - 226 MethyltransfD12 PF02086.10 260 0.00033 13.4 0.0 1 2 0.013 1.7 1.2 0.0 176 188 19 31 12 90 0.83 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_65 - 226 MethyltransfD12 PF02086.10 260 0.00033 13.4 0.0 2 2 2.8e-05 0.0035 10.0 0.0 20 46 163 189 148 197 0.79 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_32 - 877 Pox_A32 PF04665.7 241 0.00023 13.7 0.2 1 1 1.6e-05 0.00098 11.6 0.0 11 39 477 505 470 520 0.85 # 30550 # 33180 # -1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=5-10bp;gc_cont=0.596 1_35 - 62 Pox_A32 PF04665.7 241 0.00055 12.5 0.1 1 1 9.7e-06 0.00061 12.3 0.1 13 38 5 30 1 35 0.85 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 RNA_helicase PF00910.17 107 0.00044 13.7 0.0 1 1 4.3e-05 0.0027 11.2 0.0 1 20 63 82 63 95 0.88 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_35 - 62 RNA_helicase PF00910.17 107 0.00093 12.6 0.0 1 1 1.6e-05 0.00099 12.5 0.0 1 28 8 35 8 60 0.74 # 34114 # 34299 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 2_16 - 311 NACHT PF05729.7 166 0.00031 13.6 0.0 1 1 3.9e-06 0.00048 13.0 0.0 3 110 63 177 61 219 0.71 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 2_16 - 311 AAA_25 PF13481.1 194 0.00014 14.5 0.0 1 1 4.7e-06 0.00059 12.5 0.0 34 185 61 186 35 188 0.76 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 1_65 - 226 Methyltransf_15 PF09445.5 164 0.0013 11.5 0.0 1 2 0.035 4.3 0.1 0.0 53 79 4 29 2 33 0.90 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 1_65 - 226 Methyltransf_15 PF09445.5 164 0.0013 11.5 0.0 2 2 7.1e-05 0.0089 8.8 0.0 3 31 166 194 164 207 0.86 # 53715 # 54392 # -1 # ID=1_65;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.580 2_16 - 311 AAA_5 PF07728.9 139 4.1e-05 16.6 0.2 1 1 2.2e-06 0.00027 13.9 0.2 1 23 62 84 62 164 0.69 # 12485 # 13417 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.641 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/7f09d2e2-cb62-4aec-8d83-71d1562e708a # Target file: checkm_output/bins/pm904/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm904/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/7f09d2e2-cb62-4aec-8d83-71d1562e708a checkm_output/bins/pm904/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:11:00 2020 # [ok]