# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_47 - 188 Methyltransf_12 PF08242.7 99 1.4e-05 18.8 0.0 1 1 2e-07 2.5e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_56 - 228 UPF0020 PF01170.13 180 9e-06 18.6 0.0 1 2 0.00033 0.021 7.6 0.0 104 119 18 33 7 88 0.73 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 UPF0020 PF01170.13 180 9e-06 18.6 0.0 2 2 0.00012 0.0078 9.0 0.0 28 54 163 189 158 221 0.67 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_47 - 188 UPF0020 PF01170.13 180 0.0013 11.5 0.0 1 1 7.6e-05 0.0049 9.7 0.0 19 43 41 65 35 130 0.78 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 188 RrnaAD PF00398.15 262 2.7e-08 26.4 0.0 1 1 2.7e-10 3.4e-08 26.0 0.0 9 113 29 128 24 148 0.87 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 188 Methyltransf_18 PF12847.2 112 3.8e-10 33.6 0.0 1 1 6.3e-12 8e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.4e-07 24.9 1.0 1 2 0.013 1.7 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 UvrD_C_2 PF13538.1 104 1.4e-07 24.9 1.0 2 2 3.6e-08 4.5e-06 20.0 0.2 3 102 1341 1444 1339 1446 0.76 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_29 - 876 DUF87 PF01935.12 229 3e-07 23.7 0.0 1 1 6.7e-09 8.5e-07 22.2 0.0 26 221 482 668 468 676 0.75 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 3_3 - 522 NB-ARC PF00931.17 287 0.00011 14.4 0.1 1 2 2.5e-05 0.0032 9.5 0.0 18 38 34 54 24 62 0.89 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 NB-ARC PF00931.17 287 0.00011 14.4 0.1 2 2 0.0058 0.73 1.8 0.0 216 267 161 211 142 221 0.79 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_5 - 363 MetW PF07021.7 193 0.00058 12.5 0.0 1 2 3.6e-05 0.0046 9.6 0.0 117 152 236 270 233 273 0.83 # 3278 # 4366 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.598 3_5 - 363 MetW PF07021.7 193 0.00058 12.5 0.0 2 2 0.041 5.1 -0.4 0.0 16 35 337 356 329 361 0.78 # 3278 # 4366 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.598 3_3 - 522 AAA_22 PF13401.1 131 1.1e-07 25.3 0.0 1 2 4.4e-05 0.0055 10.1 0.0 4 49 35 82 32 113 0.77 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 AAA_22 PF13401.1 131 1.1e-07 25.3 0.0 2 2 1e-05 0.0013 12.1 0.0 68 123 215 278 154 285 0.64 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 ATP_bind_1 PF03029.12 238 0.00057 12.7 0.0 1 1 9.2e-06 0.0012 11.7 0.0 1 26 40 65 40 70 0.87 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 SRP54 PF00448.17 196 0.00069 12.3 0.1 1 1 1.1e-05 0.0014 11.3 0.1 2 30 36 64 35 67 0.89 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 AAA_15 PF13175.1 415 8.2e-14 44.6 3.5 1 2 3.9e-11 5e-09 28.9 0.1 1 52 13 82 13 111 0.67 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 AAA_15 PF13175.1 415 8.2e-14 44.6 3.5 2 2 2e-07 2.5e-05 16.7 0.1 364 411 239 280 156 284 0.82 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_56 - 228 N6_N4_Mtase PF01555.13 231 8.3e-37 120.1 0.0 1 2 1.3e-15 1.6e-13 43.8 0.0 1 114 21 124 21 133 0.89 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 N6_N4_Mtase PF01555.13 231 8.3e-37 120.1 0.0 2 2 5.4e-25 6.9e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_8 - 733 AAA_17 PF13207.1 121 0.0004 14.5 0.0 1 1 1.2e-05 0.0015 12.6 0.0 3 27 189 217 187 262 0.68 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 3_3 - 522 AAA_21 PF13304.1 303 2.6e-18 60.2 1.8 1 1 3.2e-20 4.1e-18 59.5 0.1 1 301 37 283 37 285 0.95 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 Miro PF08477.8 119 0.00025 14.8 0.0 1 1 4.7e-06 0.0006 13.6 0.0 3 32 39 68 37 91 0.81 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_29 - 876 MobB PF03205.9 140 0.00086 12.3 0.1 1 1 2.7e-05 0.0034 10.3 0.0 4 37 483 515 481 523 0.79 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_39 - 122 CTP_transf_2 PF01467.21 157 0.00029 14.2 0.0 1 1 2.5e-06 0.00032 14.0 0.0 31 112 6 87 1 100 0.74 # 34904 # 35269 # -1 # ID=1_39;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.511 1_8 - 733 Zeta_toxin PF06414.7 201 0.00098 11.5 0.0 1 1 3.5e-05 0.0044 9.3 0.0 21 49 190 219 182 236 0.85 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 3_3 - 522 SMC_N PF02463.14 220 7.6e-13 41.4 0.1 1 2 1.4e-12 1.8e-10 33.6 0.0 2 77 13 87 12 129 0.79 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 SMC_N PF02463.14 220 7.6e-13 41.4 0.1 2 2 0.00044 0.056 5.9 0.0 155 211 235 292 149 302 0.68 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_8 - 733 AAA_16 PF13191.1 185 5.5e-06 19.7 0.0 1 1 2e-07 2.5e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 3_3 - 522 AAA_23 PF13476.1 202 2.2e-11 37.7 1.0 1 1 2.4e-13 3e-11 37.2 0.4 2 54 16 80 15 291 0.74 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 AAA_13 PF13166.1 712 3.6e-05 15.6 0.3 1 1 4.7e-07 5.9e-05 14.9 0.3 11 53 30 72 21 110 0.66 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_47 - 188 Methyltransf_25 PF13649.1 101 0.00014 15.4 0.0 1 1 1.7e-06 0.00021 14.9 0.0 1 101 54 142 54 142 0.81 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 3_3 - 522 AAA_14 PF13173.1 128 0.00077 12.6 0.0 1 1 1.8e-05 0.0023 11.1 0.0 2 40 35 78 34 107 0.73 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 AAA_29 PF13555.1 62 1.3e-08 27.5 0.0 1 1 2.4e-10 3.1e-08 26.4 0.0 13 52 25 64 13 72 0.79 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 AAA PF00004.24 132 1.2e-06 22.0 0.1 1 2 0.0025 0.32 4.5 0.0 3 19 40 56 38 75 0.89 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 AAA PF00004.24 132 1.2e-06 22.0 0.1 2 2 1.6e-06 0.0002 14.8 0.1 27 96 205 266 172 298 0.76 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 MMR_HSR1 PF01926.18 116 0.0011 12.2 0.0 1 1 3.4e-05 0.0043 10.3 0.0 3 28 39 66 37 88 0.78 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 DUF258 PF03193.11 161 0.00031 13.2 0.0 1 1 4.6e-06 0.00059 12.3 0.0 29 60 29 60 5 74 0.74 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_8 - 733 TraG-D_C PF12696.2 128 9.8e-21 67.2 0.0 1 1 1.4e-22 1.8e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 3_3 - 522 NTPase_1 PF03266.10 168 0.00047 13.1 0.0 1 2 0.00029 0.037 6.9 0.0 3 24 39 60 37 90 0.87 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 NTPase_1 PF03266.10 168 0.00047 13.1 0.0 2 2 0.0028 0.36 3.7 0.0 83 142 222 285 193 300 0.71 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_47 - 188 Methyltransf_26 PF13659.1 117 3.4e-14 46.2 0.0 1 1 9e-16 5.7e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_56 - 228 Methyltransf_26 PF13659.1 117 1.8e-12 40.6 0.1 1 2 7e-08 4.5e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Methyltransf_26 PF13659.1 117 1.8e-12 40.6 0.1 2 2 1.9e-07 1.2e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_7 - 1757 AAA_30 PF13604.1 196 9.3e-45 145.8 12.8 1 3 0.083 5.3 -0.2 0.0 41 86 223 269 219 281 0.81 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 9.3e-45 145.8 12.8 2 3 1.1e-05 0.0007 12.4 2.6 7 142 420 547 416 571 0.81 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_30 PF13604.1 196 9.3e-45 145.8 12.8 3 3 6.4e-44 4.1e-42 137.2 1.2 1 186 968 1156 968 1162 0.93 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 733 AAA_30 PF13604.1 196 0.00074 12.3 0.0 1 1 2.6e-05 0.0016 11.2 0.0 21 57 188 224 180 230 0.85 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 2.2e-05 17.2 0.2 1 2 4.1e-06 0.00026 13.7 0.0 39 63 476 504 463 507 0.84 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 FtsK_SpoIIIE PF01580.13 205 2.2e-05 17.2 0.2 2 2 0.036 2.3 0.9 0.0 75 166 530 625 529 634 0.75 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 3_3 - 522 FtsK_SpoIIIE PF01580.13 205 0.00024 13.8 0.0 1 1 8.2e-06 0.00052 12.7 0.0 40 60 37 57 2 64 0.74 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_47 - 188 MTS PF05175.9 170 1.1e-09 31.1 0.0 1 1 1.2e-11 1.5e-09 30.7 0.0 31 141 50 149 41 166 0.84 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 3_3 - 522 DUF2813 PF11398.3 373 6.8e-06 18.5 0.0 1 1 9.5e-08 1.2e-05 17.7 0.0 2 70 12 85 11 124 0.86 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_47 - 188 Methyltrans_SAM PF10672.4 286 0.0012 11.0 0.0 1 1 1.3e-05 0.0017 10.5 0.0 196 261 113 173 100 180 0.78 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_47 - 188 Met_10 PF02475.11 200 0.00056 12.7 0.0 1 1 5.7e-06 0.00072 12.4 0.0 98 189 47 132 29 145 0.79 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 3_3 - 522 ABC_tran PF00005.22 137 3.2e-08 27.2 0.0 1 1 1.8e-09 1.1e-07 25.4 0.0 12 45 36 69 24 247 0.60 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_29 - 876 ABC_tran PF00005.22 137 0.0013 12.3 0.0 1 1 5.8e-05 0.0037 10.8 0.0 13 102 481 610 476 619 0.60 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_56 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.9 0.0 1 2 0.00032 0.04 6.5 0.0 113 146 19 54 5 81 0.66 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Cons_hypoth95 PF03602.10 183 1.3e-05 17.9 0.0 2 2 4e-05 0.0051 9.4 0.0 41 62 162 183 145 218 0.78 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_7 - 1757 AAA_19 PF13245.1 76 6.2e-08 25.6 1.3 1 1 5.5e-09 3.5e-07 23.2 0.3 5 76 979 1047 974 1047 0.74 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 3_3 - 522 AAA_19 PF13245.1 76 0.00027 14.0 0.0 1 1 1.2e-05 0.00075 12.5 0.0 10 39 35 63 29 72 0.83 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_29 - 876 AAA_10 PF12846.2 304 1.8e-49 162.0 0.0 1 1 4.7e-51 3e-49 161.3 0.0 1 294 479 768 479 774 0.89 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_8 - 733 AAA_10 PF12846.2 304 1.7e-10 34.0 0.0 1 1 4.9e-11 3.1e-09 29.9 0.0 3 296 187 494 186 500 0.68 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_47 - 188 Methyltransf_31 PF13847.1 152 7.9e-07 22.0 0.0 1 1 7.6e-09 9.7e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00028 13.6 0.1 1 2 0.00031 0.039 6.6 0.0 1 23 988 1011 988 1191 0.78 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00028 13.6 0.1 2 2 0.0021 0.27 3.9 0.1 159 234 1370 1447 1341 1447 0.63 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 733 TrwB_AAD_bind PF10412.4 386 3.3e-150 493.2 0.0 1 1 6.3e-152 4e-150 492.9 0.0 2 386 172 561 171 561 0.99 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_29 - 876 TrwB_AAD_bind PF10412.4 386 1.1e-06 20.7 0.3 1 1 4.8e-08 3e-06 19.3 0.0 15 53 479 517 470 547 0.80 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_7 - 1757 AAA_11 PF13086.1 236 0.00012 15.0 1.9 1 2 3.9e-06 0.00049 12.9 0.0 2 75 969 1039 968 1060 0.81 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_7 - 1757 AAA_11 PF13086.1 236 0.00012 15.0 1.9 2 2 0.096 12 -1.5 1.5 62 123 1684 1744 1642 1753 0.46 # 4377 # 9647 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.599 1_8 - 733 T4SS-DNA_transf PF02534.9 469 5.8e-10 31.5 0.0 1 1 2e-11 1.3e-09 30.3 0.0 250 361 362 476 198 500 0.76 # 9647 # 11845 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.528 1_29 - 876 T4SS-DNA_transf PF02534.9 469 4.8e-06 18.6 0.1 1 2 0.00023 0.015 7.1 0.0 105 186 533 608 475 623 0.88 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_29 - 876 T4SS-DNA_transf PF02534.9 469 4.8e-06 18.6 0.1 2 2 5.1e-05 0.0032 9.2 0.1 319 378 711 769 665 771 0.92 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_47 - 188 TIGR00755 TIGR00755 256 9e-09 27.9 0.0 1 1 9.5e-11 1.2e-08 27.4 0.0 8 105 29 123 25 134 0.90 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 1_56 - 228 MethyltransfD12 PF02086.10 260 0.00072 12.3 0.0 1 2 0.022 2.8 0.5 0.0 178 188 21 31 14 91 0.83 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 MethyltransfD12 PF02086.10 260 0.00072 12.3 0.0 2 2 4e-05 0.0051 9.5 0.0 20 46 163 189 148 197 0.78 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_29 - 876 Pox_A32 PF04665.7 241 0.00084 11.9 0.0 1 1 1.8e-05 0.0023 10.4 0.0 6 38 472 504 469 519 0.85 # 27166 # 29793 # -1 # ID=1_29;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.539 1_47 - 188 Methyltransf_23 PF13489.1 161 7.7e-05 15.7 0.0 1 1 7.8e-07 9.9e-05 15.3 0.0 9 120 38 153 27 174 0.78 # 40180 # 40743 # -1 # ID=1_47;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.578 3_3 - 522 NACHT PF05729.7 166 0.00035 13.5 0.0 1 2 0.00014 0.018 7.9 0.0 2 37 37 73 36 94 0.76 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 3_3 - 522 NACHT PF05729.7 166 0.00035 13.5 0.0 2 2 0.0045 0.57 3.0 0.0 77 114 229 265 153 290 0.77 # 785 # 2350 # 1 # ID=3_3;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.448 1_56 - 228 Methyltransf_15 PF09445.5 164 0.00036 13.3 0.0 1 2 0.012 1.6 1.5 0.0 53 79 4 29 2 33 0.91 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Methyltransf_15 PF09445.5 164 0.00036 13.3 0.0 2 2 4.2e-05 0.0054 9.5 0.0 3 31 166 194 164 209 0.86 # 46061 # 46744 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ee2d5b18-b783-4d90-b05f-f1e255025251 # Target file: checkm_output/bins/pm903/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm903/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ee2d5b18-b783-4d90-b05f-f1e255025251 checkm_output/bins/pm903/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:59 2020 # [ok]