# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_10 - 437 Mg_chelatase PF01078.16 207 5.1e-06 18.1 0.0 1 2 0.00014 0.0097 7.4 0.0 20 45 165 190 150 199 0.83 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 3_10 - 437 Mg_chelatase PF01078.16 207 5.1e-06 18.1 0.0 2 2 7.8e-05 0.0054 8.2 0.0 93 121 224 252 217 288 0.77 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 2_7 - 208 Methyltransf_12 PF08242.7 99 9.1e-06 18.5 0.0 1 1 2.9e-07 2e-05 17.4 0.0 19 99 14 88 4 88 0.71 # 7207 # 7830 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_2 - 400 MipZ PF09140.6 261 2.7e-07 22.2 0.1 1 2 2.8e-05 0.0019 9.6 0.0 3 51 112 165 110 193 0.73 # 313 # 1512 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 400 MipZ PF09140.6 261 2.7e-07 22.2 0.1 2 2 1.5e-05 0.0011 10.5 0.1 86 135 233 282 207 287 0.84 # 313 # 1512 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_21 - 176 SSB PF00436.20 104 5.2e-44 140.8 0.5 1 1 1e-45 7.2e-44 140.4 0.5 1 99 6 105 6 113 0.96 # 25845 # 26372 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.523 2_7 - 208 Methyltransf_18 PF12847.2 112 1.9e-05 17.6 0.0 1 1 5.2e-07 3.6e-05 16.8 0.0 15 111 6 92 3 93 0.81 # 7207 # 7830 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_30 - 761 UvrD_C_2 PF13538.1 104 1.4e-06 20.8 0.3 1 2 0.044 3 0.5 0.0 7 36 551 580 546 605 0.77 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 1_30 - 761 UvrD_C_2 PF13538.1 104 1.4e-06 20.8 0.3 2 2 4.1e-07 2.8e-05 16.6 0.0 3 91 663 755 661 756 0.65 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 2_8 - 192 MetW PF07021.7 193 0.00052 11.8 0.2 1 2 0.0031 0.22 3.2 0.0 56 82 29 54 12 59 0.85 # 7782 # 8357 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.342 2_8 - 192 MetW PF07021.7 193 0.00052 11.8 0.2 2 2 0.00034 0.024 6.4 0.0 11 30 166 185 155 191 0.80 # 7782 # 8357 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.342 1_30 - 761 AAA_22 PF13401.1 131 0.00041 12.9 0.0 1 1 9.2e-05 0.0064 9.0 0.0 5 99 309 398 305 439 0.73 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 2_7 - 208 Methyltransf_11 PF08241.7 95 1.8e-09 30.4 0.0 1 1 3.8e-11 2.6e-09 29.9 0.0 10 94 6 89 3 90 0.88 # 7207 # 7830 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_2 - 400 ArsA_ATPase PF02374.10 305 0.00021 12.8 0.1 1 1 8.9e-06 0.00062 11.2 0.0 5 49 112 164 109 257 0.70 # 313 # 1512 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 3_10 - 437 T2SE PF00437.15 272 0.00034 11.9 0.1 1 1 1.5e-05 0.001 10.3 0.0 107 143 146 182 105 191 0.74 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 2_7 - 208 CMAS PF02353.15 273 4.8e-62 201.8 0.0 1 1 1.7e-63 5.8e-62 201.5 0.0 74 273 4 193 2 193 0.97 # 7207 # 7830 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 2_8 - 192 CMAS PF02353.15 273 3.5e-32 103.9 0.2 1 1 1.7e-33 5.8e-32 103.2 0.2 2 77 109 183 108 189 0.95 # 7782 # 8357 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.342 2_15 - 554 Malic_M PF03949.10 255 1.6e-87 285.6 0.0 1 1 2.9e-89 2e-87 285.3 0.0 1 251 262 515 262 519 0.99 # 21387 # 23048 # 1 # ID=2_15;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.387 1_2 - 400 Fer4_NifH PF00142.13 273 0.00041 11.9 0.0 1 1 1.3e-05 0.0009 10.8 0.0 8 75 118 190 113 205 0.76 # 313 # 1512 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 3_10 - 437 AAA_16 PF13191.1 185 4.1e-05 16.0 0.2 1 1 1.4e-06 9.9e-05 14.7 0.1 9 63 153 205 145 404 0.86 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 2_8 - 192 AAA_13 PF13166.1 712 0.0004 11.2 0.0 1 1 9.1e-06 0.00063 10.6 0.0 48 79 25 55 5 63 0.83 # 7782 # 8357 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.342 1_2 - 400 CbiA PF01656.18 195 1.1e-20 66.2 0.0 1 1 3.3e-22 2.3e-20 65.2 0.0 2 144 113 295 112 333 0.71 # 313 # 1512 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 3_10 - 437 AAA PF00004.24 132 4.8e-05 16.0 0.0 1 1 1.8e-06 0.00012 14.7 0.0 1 71 170 250 170 307 0.79 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 3_10 - 437 Sigma54_activat PF00158.21 168 2.5e-62 201.7 0.0 1 1 5.1e-64 3.5e-62 201.1 0.0 1 167 146 311 146 312 0.98 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 2_8 - 192 PCMT PF01135.14 210 0.00031 12.7 0.0 1 1 6.9e-06 0.00047 12.1 0.0 64 85 159 180 139 184 0.89 # 7782 # 8357 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.342 1_26 - 517 TraG-D_C PF12696.2 128 1.6e-19 62.4 0.0 1 1 5.3e-21 3.6e-19 61.3 0.0 1 127 195 317 195 318 0.85 # 28790 # 30340 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_2 - 400 AAA_31 PF13614.1 157 0.0002 13.7 0.0 1 2 0.0019 0.13 4.6 0.0 9 53 118 167 112 222 0.76 # 313 # 1512 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_2 - 400 AAA_31 PF13614.1 157 0.0002 13.7 0.0 2 2 0.00043 0.03 6.6 0.0 112 137 240 265 235 278 0.80 # 313 # 1512 # 1 # ID=1_2;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.391 1_30 - 761 AAA_30 PF13604.1 196 2.2e-42 137.2 0.4 1 1 7.7e-44 5.3e-42 136.0 0.4 2 186 292 479 291 487 0.93 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 2_8 - 192 MTS PF05175.9 170 0.00076 11.2 0.1 1 1 2.1e-05 0.0014 10.4 0.1 21 45 158 182 152 188 0.89 # 7782 # 8357 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.342 1_30 - 761 AAA_19 PF13245.1 76 3.6e-07 22.3 0.2 1 1 1.6e-08 1.1e-06 20.7 0.2 6 76 303 370 297 370 0.79 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 1_26 - 517 AAA_10 PF12846.2 304 2.9e-05 15.9 0.0 1 1 6.4e-07 4.4e-05 15.3 0.0 200 296 173 270 154 277 0.82 # 28790 # 30340 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 2_7 - 208 Methyltransf_31 PF13847.1 152 1.7e-05 16.9 0.1 1 1 4.9e-07 3.4e-05 15.8 0.1 24 112 11 94 4 154 0.81 # 7207 # 7830 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 1_26 - 517 TrwB_AAD_bind PF10412.4 386 3.8e-75 245.2 0.0 1 1 8e-77 5.5e-75 244.7 0.0 178 385 126 336 117 337 0.95 # 28790 # 30340 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 1_30 - 761 AAA_11 PF13086.1 236 3.6e-06 19.1 0.1 1 3 0.085 5.9 -1.3 0.1 59 124 113 182 100 265 0.57 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 1_30 - 761 AAA_11 PF13086.1 236 3.6e-06 19.1 0.1 2 3 5.6e-05 0.0038 9.1 0.0 4 70 294 357 291 383 0.81 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 1_30 - 761 AAA_11 PF13086.1 236 3.6e-06 19.1 0.1 3 3 0.00038 0.026 6.4 0.0 194 232 388 429 368 431 0.80 # 31392 # 33674 # 1 # ID=1_30;partial=00;start_type=TTG;rbs_motif=3Base/5BMM;rbs_spacer=13-15bp;gc_cont=0.564 3_10 - 437 Sigma54_activ_2 PF14532.1 138 3.4e-25 81.1 0.0 1 1 1.6e-26 1.1e-24 79.4 0.0 1 138 147 316 147 316 0.91 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 1_26 - 517 T4SS-DNA_transf PF02534.9 469 7.4e-10 30.3 0.0 1 1 1.6e-11 1.1e-09 29.7 0.0 298 367 189 258 156 286 0.77 # 28790 # 30340 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.548 2_12 - 383 DWNN PF08783.6 74 5.1e-05 15.6 0.6 1 1 1.8e-06 0.00012 14.4 0.6 24 72 278 332 251 334 0.79 # 11048 # 12196 # -1 # ID=2_12;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.346 2_7 - 208 Methyltransf_23 PF13489.1 161 2.2e-08 26.4 0.0 1 1 8.7e-10 3e-08 25.9 0.0 42 120 13 97 4 137 0.69 # 7207 # 7830 # -1 # ID=2_7;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.357 2_8 - 192 Methyltransf_23 PF13489.1 161 5.7e-05 15.3 0.0 1 1 3.4e-06 0.00012 14.3 0.0 10 38 154 184 143 188 0.79 # 7782 # 8357 # -1 # ID=2_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.342 3_10 - 437 AAA_5 PF07728.9 139 1.2e-06 20.7 0.0 1 2 0.04 2.8 0.1 0.0 79 134 110 141 88 154 0.58 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 3_10 - 437 AAA_5 PF07728.9 139 1.2e-06 20.7 0.0 2 2 1.7e-07 1.2e-05 17.5 0.0 1 119 169 283 169 302 0.80 # 12836 # 14146 # 1 # ID=3_10;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=13bp;gc_cont=0.395 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/94ee962d-2d90-4a08-9c36-01a389d069a3 # Target file: checkm_output/bins/pm896/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm896/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/94ee962d-2d90-4a08-9c36-01a389d069a3 checkm_output/bins/pm896/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:53 2020 # [ok]