# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_78 - 755 UPF0020 PF01170.13 180 0.00024 13.9 0.0 1 2 0.0078 0.93 2.2 0.0 28 50 510 532 507 568 0.86 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_78 - 755 UPF0020 PF01170.13 180 0.00024 13.9 0.0 2 2 8.1e-05 0.0095 8.6 0.0 86 116 637 667 632 673 0.91 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_28 - 495 Terminase_6 PF03237.10 384 2.1e-06 19.8 0.1 1 1 3.9e-08 4.6e-06 18.7 0.1 6 317 58 380 55 426 0.74 # 29698 # 31182 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_90 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 1 2 4.6e-05 0.0054 8.9 0.0 1 51 109 164 109 187 0.77 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_90 - 399 MipZ PF09140.6 261 7.2e-09 28.2 0.1 2 2 1.4e-07 1.7e-05 17.2 0.0 82 135 228 281 213 289 0.86 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_13 - 163 SSB PF00436.20 104 4.2e-43 138.6 0.3 1 1 4.6e-45 5.5e-43 138.3 0.3 1 100 6 109 6 113 0.96 # 11430 # 11918 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_78 - 755 DNA_methylase PF00145.12 335 5.1e-39 127.4 0.0 1 3 3e-25 3.6e-23 75.3 0.0 5 119 8 135 6 145 0.92 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_78 - 755 DNA_methylase PF00145.12 335 5.1e-39 127.4 0.0 2 3 1.5e-15 1.8e-13 43.4 0.0 136 308 192 406 187 415 0.57 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_78 - 755 DNA_methylase PF00145.12 335 5.1e-39 127.4 0.0 3 3 0.001 0.12 4.5 0.0 312 334 441 463 430 464 0.88 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_17 - 2256 Helicase_C PF00271.26 78 7.8e-09 28.5 0.0 1 1 1.6e-10 1.9e-08 27.2 0.0 16 78 1454 1517 1435 1517 0.86 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_90 - 399 ArsA_ATPase PF02374.10 305 0.00052 12.2 0.0 1 1 1.2e-05 0.0014 10.8 0.0 4 52 111 166 108 255 0.74 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_7 - 640 AAA_13 PF13166.1 712 0.0098 7.4 11.8 1 2 1.3e-05 0.0015 10.1 7.4 377 466 198 282 152 283 0.75 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_7 - 640 AAA_13 PF13166.1 712 0.0098 7.4 11.8 2 2 0.049 5.8 -1.7 0.1 368 398 563 593 512 634 0.53 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_90 - 399 CbiA PF01656.18 195 1.2e-20 66.8 0.0 1 1 1.8e-22 2.2e-20 66.0 0.0 1 144 111 294 111 322 0.75 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_74 - 455 KaiC PF06745.8 227 2.1e-05 16.8 0.0 1 1 4.4e-07 5.2e-05 15.5 0.0 4 66 185 253 183 279 0.85 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_111 - 279 HI0933_like PF03486.9 409 0.00084 11.0 0.0 1 1 1e-05 0.0012 10.4 0.0 60 124 27 90 19 110 0.79 # 91336 # 92172 # 1 # ID=1_111;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.458 1_17 - 2256 N6_Mtase PF02384.11 311 2.8e-10 32.8 0.0 1 1 3.3e-11 3.8e-09 29.1 0.0 93 249 145 291 73 296 0.76 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_90 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 1 2 0.0009 0.053 6.6 0.0 2 63 110 176 109 222 0.75 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_90 - 399 AAA_31 PF13614.1 157 6.3e-07 22.6 0.0 2 2 6e-06 0.00035 13.7 0.0 108 138 235 265 231 277 0.85 # 70716 # 71912 # 1 # ID=1_90;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.455 1_74 - 455 AAA_31 PF13614.1 157 7.8e-05 15.8 0.0 1 1 3.2e-06 0.00019 14.6 0.0 5 43 210 249 208 260 0.89 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 AAA_33 PF13671.1 143 0.001 12.1 0.2 1 3 0.088 10 -0.9 0.0 46 79 134 172 102 181 0.69 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 AAA_33 PF13671.1 143 0.001 12.1 0.2 2 3 0.00018 0.022 7.8 0.0 2 39 209 245 208 326 0.63 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 AAA_33 PF13671.1 143 0.001 12.1 0.2 3 3 0.036 4.2 0.4 0.1 88 123 350 383 331 394 0.72 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 DnaB_C PF03796.10 259 2e-109 357.6 0.2 1 1 2.5e-111 2.9e-109 357.0 0.2 1 257 188 445 188 447 0.98 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_17 - 2256 Methyltransf_26 PF13659.1 117 1.8e-09 30.8 0.1 1 1 2.9e-10 1.7e-08 27.7 0.0 5 116 116 225 113 226 0.79 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_78 - 755 Methyltransf_26 PF13659.1 117 8.4e-06 19.0 0.0 1 1 4.3e-07 2.6e-05 17.4 0.0 1 83 511 670 511 720 0.70 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_28 - 495 AAA_30 PF13604.1 196 4.4e-05 16.3 0.0 1 1 3.7e-06 0.00044 13.0 0.0 5 127 37 189 35 194 0.70 # 29698 # 31182 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.478 1_74 - 455 FtsK_SpoIIIE PF01580.13 205 0.00028 13.5 0.2 1 2 5.2e-05 0.0062 9.1 0.0 36 68 204 235 179 267 0.80 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 FtsK_SpoIIIE PF01580.13 205 0.00028 13.5 0.2 2 2 0.012 1.4 1.4 0.1 71 124 319 366 313 400 0.74 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_74 - 455 AAA_35 PF14516.1 331 0.0011 10.8 0.0 1 1 1.5e-05 0.0017 10.1 0.0 28 65 203 240 194 271 0.82 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_17 - 2256 Eco57I PF07669.6 106 4.6e-05 16.9 0.0 1 1 1.6e-06 0.00019 14.9 0.0 3 101 174 271 172 276 0.87 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.002 11.7 5.3 1 2 0.004 0.48 4.1 0.5 8 42 196 230 191 236 0.81 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_7 - 640 Kinesin-relat_1 PF12711.2 86 0.002 11.7 5.3 2 2 0.00015 0.018 8.6 0.4 7 37 251 281 246 284 0.91 # 3737 # 5656 # 1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.519 1_78 - 755 MethyltransfD12 PF02086.10 260 2.7e-56 184.0 0.0 1 1 3.1e-58 3.6e-56 183.6 0.0 1 251 493 727 493 736 0.93 # 60198 # 62462 # -1 # ID=1_78;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.491 1_20 - 436 CIDE-N PF02017.10 78 0.00099 12.1 0.6 1 3 0.031 3.6 0.6 0.0 23 39 36 52 28 73 0.80 # 23272 # 24579 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_20 - 436 CIDE-N PF02017.10 78 0.00099 12.1 0.6 2 3 0.00034 0.04 6.9 0.1 51 67 167 183 165 187 0.92 # 23272 # 24579 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_20 - 436 CIDE-N PF02017.10 78 0.00099 12.1 0.6 3 3 0.073 8.6 -0.6 0.0 48 64 254 268 253 273 0.80 # 23272 # 24579 # -1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.344 1_13 - 163 tRNA_anti-codon PF01336.20 75 0.00075 12.5 0.0 1 1 1e-05 0.0012 11.9 0.0 31 61 58 92 53 112 0.82 # 11430 # 11918 # -1 # ID=1_13;partial=00;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.495 1_74 - 455 AAA_25 PF13481.1 194 1.4e-14 47.1 0.0 1 1 2.2e-16 2.7e-14 46.2 0.0 13 190 187 368 174 372 0.82 # 56205 # 57569 # -1 # ID=1_74;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 1_17 - 2256 SNF2_N PF00176.18 299 8.6e-18 57.2 0.0 1 1 1.7e-19 2.1e-17 56.0 0.0 27 294 849 1263 835 1268 0.85 # 15734 # 22501 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.521 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/17858073-dd51-46ad-ba49-c6cc061f42e7 # Target file: checkm_output/bins/pm892/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm892/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/17858073-dd51-46ad-ba49-c6cc061f42e7 checkm_output/bins/pm892/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:54 2020 # [ok]