# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_56 - 228 UPF0020 PF01170.13 180 1.5e-05 17.6 0.0 1 2 0.00028 0.028 6.9 0.0 103 121 17 35 4 89 0.71 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 UPF0020 PF01170.13 180 1.5e-05 17.6 0.0 2 2 7.3e-05 0.0073 8.8 0.0 28 54 163 189 160 221 0.66 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_48 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 1 2 0.0008 0.08 4.8 0.5 7 25 8 26 2 38 0.71 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_48 - 215 MipZ PF09140.6 261 2.4e-08 26.2 2.3 2 2 9e-09 9e-07 21.1 0.1 70 133 45 108 25 125 0.84 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_64 - 176 SSB PF00436.20 104 6.5e-41 131.4 0.4 1 1 8.6e-43 8.6e-41 131.0 0.4 1 101 6 109 6 112 0.96 # 53432 # 53959 # 1 # ID=1_64;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.595 1_6 - 383 DUF87 PF01935.12 229 0.00061 12.5 0.0 1 1 1.1e-05 0.0011 11.7 0.0 28 56 162 191 161 192 0.88 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 AAA_22 PF13401.1 131 1e-05 18.6 0.0 1 1 4.9e-07 2.5e-05 17.4 0.0 4 46 157 196 152 233 0.76 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_22 PF13401.1 131 0.00027 14.0 0.0 1 1 1.3e-05 0.00064 12.8 0.0 6 28 227 249 222 330 0.77 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 ATP_bind_1 PF03029.12 238 4.7e-05 15.9 0.0 1 1 7.2e-07 7.2e-05 15.3 0.0 1 23 162 184 162 197 0.86 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 228 N6_N4_Mtase PF01555.13 231 7e-36 116.7 0.0 1 2 7.6e-15 7.6e-13 41.3 0.0 1 114 21 124 21 137 0.89 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 N6_N4_Mtase PF01555.13 231 7e-36 116.7 0.0 2 2 9.2e-25 9.2e-23 73.8 0.0 169 228 141 200 126 203 0.90 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_6 - 383 AAA_17 PF13207.1 121 1.9e-05 18.4 0.1 1 2 4.7e-06 0.00024 14.9 0.0 3 47 161 208 161 251 0.76 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 AAA_17 PF13207.1 121 1.9e-05 18.4 0.1 2 2 0.086 4.3 1.1 0.1 24 113 332 363 274 374 0.60 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_17 PF13207.1 121 2.4e-05 18.1 0.3 1 1 2e-06 0.0001 16.0 0.0 1 24 227 255 227 347 0.72 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 1 2 0.017 1.7 1.3 0.0 14 60 61 108 61 127 0.88 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 MobB PF03205.9 140 1.9e-05 17.3 0.0 2 2 3.1e-06 0.00031 13.4 0.0 5 26 162 183 160 193 0.90 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 T2SE PF00437.15 272 2.7e-41 134.1 0.0 1 1 9.6e-43 4.8e-41 133.3 0.0 10 271 97 373 90 374 0.85 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 T2SE PF00437.15 272 8e-36 116.2 0.0 1 1 2.4e-37 1.2e-35 115.6 0.0 120 269 149 306 127 309 0.88 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 G-alpha PF00503.15 389 0.00064 11.3 0.0 1 2 0.054 5.4 -1.6 0.0 234 272 70 113 29 117 0.80 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 G-alpha PF00503.15 389 0.00064 11.3 0.0 2 2 1.9e-05 0.0019 9.8 0.0 58 87 225 254 214 322 0.84 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_48 - 215 VirC1 PF07015.6 231 0.00041 12.4 0.0 1 2 0.00073 0.073 5.0 0.0 3 29 3 29 1 36 0.81 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_48 - 215 VirC1 PF07015.6 231 0.00041 12.4 0.0 2 2 0.00052 0.052 5.5 0.0 87 190 77 181 59 194 0.70 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_19 - 518 AAA_16 PF13191.1 185 9.9e-05 15.3 0.0 1 1 6.4e-06 0.00032 13.6 0.0 8 51 213 252 212 301 0.78 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_16 PF13191.1 185 0.00029 13.7 0.0 1 1 1.2e-05 0.00061 12.7 0.0 27 52 160 188 148 282 0.82 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_23 PF13476.1 202 0.00013 15.2 0.2 1 1 9.7e-06 0.00049 13.4 0.0 20 38 226 244 208 249 0.84 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_23 PF13476.1 202 0.00022 14.5 0.0 1 1 7.3e-06 0.00037 13.8 0.0 19 40 157 178 142 209 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_6 - 383 AAA_18 PF13238.1 129 1.5e-05 18.2 0.0 1 1 6e-07 3e-05 17.3 0.0 2 42 161 197 161 230 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_18 PF13238.1 129 0.00038 13.7 0.0 1 1 2.1e-05 0.0011 12.2 0.0 1 18 228 245 228 316 0.86 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_48 - 215 CbiA PF01656.18 195 1.2e-09 30.7 0.1 1 1 1.8e-11 1.8e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 42490 # 43134 # 1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_19 - 518 AAA_14 PF13173.1 128 0.0009 12.1 0.0 1 1 3.7e-05 0.0037 10.1 0.0 5 30 228 254 225 286 0.80 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA_29 PF13555.1 62 2.8e-05 16.5 0.0 1 1 1.1e-06 5.7e-05 15.6 0.0 21 40 224 242 217 254 0.83 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_29 PF13555.1 62 3.8e-05 16.1 0.0 1 1 2.3e-06 0.00011 14.6 0.0 26 44 160 178 151 186 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA PF00004.24 132 0.00025 14.2 0.0 1 3 0.045 4.5 0.4 0.0 38 57 81 100 26 114 0.78 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA PF00004.24 132 0.00025 14.2 0.0 2 3 0.00033 0.033 7.3 0.0 1 21 228 248 228 278 0.83 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA PF00004.24 132 0.00025 14.2 0.0 3 3 0.017 1.7 1.8 0.0 9 66 442 508 436 515 0.64 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_80 - 764 TraG-D_C PF12696.2 128 5.2e-07 22.5 0.2 1 1 1.2e-08 1.2e-06 21.4 0.2 1 88 437 524 437 554 0.82 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_56 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 1 2 2.6e-07 2.6e-05 17.2 0.0 57 114 7 71 2 74 0.69 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Methyltransf_26 PF13659.1 117 1.1e-11 37.8 0.1 2 2 9.7e-08 9.7e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_19 - 518 AAA_30 PF13604.1 196 0.00032 13.2 0.0 1 1 5.8e-06 0.00058 12.4 0.0 4 44 211 251 209 276 0.84 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_9 - 195 DNA_pol3_delta PF06144.8 172 2.1e-06 20.3 0.0 1 1 3e-08 3e-06 19.7 0.0 35 99 92 152 74 179 0.80 # 8318 # 8902 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.402 1_19 - 518 ABC_tran PF00005.22 137 8.8e-05 15.7 0.1 1 1 5.3e-06 0.00027 14.2 0.0 12 37 226 251 217 288 0.81 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 4.3e-06 0.00022 14.5 0.0 16 35 162 181 152 211 0.87 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_56 - 228 Cons_hypoth95 PF03602.10 183 7.4e-06 18.3 0.0 1 2 0.00027 0.027 6.8 0.0 112 168 18 76 9 83 0.68 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Cons_hypoth95 PF03602.10 183 7.4e-06 18.3 0.0 2 2 3.5e-05 0.0035 9.6 0.0 41 62 162 183 144 218 0.77 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_19 - 518 DAP3 PF10236.4 309 0.00063 11.6 0.0 1 1 1.2e-05 0.0012 10.7 0.0 21 42 223 244 215 253 0.86 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA_19 PF13245.1 76 9.5e-05 15.1 0.0 1 1 2.6e-06 0.00026 13.7 0.0 10 46 226 259 218 268 0.79 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_92 - 1015 AAA_10 PF12846.2 304 1.1e-30 99.9 0.0 1 1 1e-31 2.6e-30 98.7 0.0 8 302 502 897 498 898 0.89 # 79446 # 82490 # -1 # ID=1_92;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.507 1_80 - 764 AAA_10 PF12846.2 304 2.6e-05 16.6 1.0 1 1 3.1e-06 7.8e-05 15.1 1.0 2 287 137 501 136 514 0.62 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_19 - 518 AAA_10 PF12846.2 304 0.00023 13.5 0.0 1 1 1.7e-05 0.00042 12.7 0.0 4 30 228 256 226 321 0.81 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_6 - 383 AAA_10 PF12846.2 304 0.00051 12.4 0.0 1 1 4e-05 0.001 11.4 0.0 2 21 158 177 157 196 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_76 - 283 Methyltransf_27 PF13708.1 194 9.3e-67 217.2 0.0 1 1 1.3e-68 1.3e-66 216.7 0.0 2 194 85 278 84 278 0.96 # 62623 # 63471 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.508 1_80 - 764 TrwB_AAD_bind PF10412.4 386 2.3e-06 19.3 0.2 1 2 9.3e-05 0.0093 7.4 0.0 11 32 132 153 126 157 0.84 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_80 - 764 TrwB_AAD_bind PF10412.4 386 2.3e-06 19.3 0.2 2 2 3e-05 0.003 9.0 0.1 247 332 440 525 427 555 0.88 # 67205 # 69496 # -1 # ID=1_80;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.499 1_56 - 228 MethyltransfD12 PF02086.10 260 0.00034 13.0 0.0 1 2 0.014 1.4 1.1 0.0 175 188 18 31 8 91 0.80 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 MethyltransfD12 PF02086.10 260 0.00034 13.0 0.0 2 2 3.3e-05 0.0033 9.7 0.0 16 46 157 189 148 197 0.78 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_6 - 383 RNA_helicase PF00910.17 107 9.6e-05 15.5 0.0 1 1 1.9e-06 0.00019 14.5 0.0 2 28 161 187 160 205 0.83 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_30 - 178 TIGR00922 TIGR00922 172 0.00079 11.9 0.0 1 1 9.5e-06 0.00095 11.6 0.0 47 103 51 109 24 142 0.80 # 28080 # 28613 # -1 # ID=1_30;partial=00;start_type=GTG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.436 1_6 - 383 AAA_25 PF13481.1 194 0.0002 13.7 0.0 1 1 7e-06 0.00035 12.9 0.0 24 58 148 182 124 207 0.78 # 5505 # 6653 # -1 # ID=1_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.509 1_19 - 518 AAA_25 PF13481.1 194 0.00031 13.1 0.0 1 2 8.7e-05 0.0044 9.3 0.0 25 65 217 260 200 270 0.72 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_19 - 518 AAA_25 PF13481.1 194 0.00031 13.1 0.0 2 2 0.039 1.9 0.7 0.0 153 190 297 337 292 340 0.74 # 18426 # 19979 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.468 1_56 - 228 Methyltransf_15 PF09445.5 164 0.00079 11.9 0.0 1 2 0.045 4.5 -0.3 0.0 53 79 4 29 2 32 0.90 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_56 - 228 Methyltransf_15 PF09445.5 164 0.00079 11.9 0.0 2 2 4.2e-05 0.0042 9.5 0.0 3 31 166 194 164 209 0.86 # 48994 # 49677 # 1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/aba999bd-0667-48e2-9cb7-29334a769521 # Target file: checkm_output/bins/pm883/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm883/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/aba999bd-0667-48e2-9cb7-29334a769521 checkm_output/bins/pm883/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:45 2020 # [ok]