# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_84 - 258 Methyltransf_12 PF08242.7 99 5.2e-06 19.8 0.0 1 1 1.2e-07 1.1e-05 18.7 0.0 1 82 111 188 111 199 0.85 # 71134 # 71907 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_73 - 226 UPF0020 PF01170.13 180 3.3e-06 19.6 0.0 1 2 9e-05 0.0086 8.5 0.0 102 122 16 36 3 87 0.72 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_73 - 226 UPF0020 PF01170.13 180 3.3e-06 19.6 0.0 2 2 5.4e-05 0.0052 9.2 0.0 27 54 162 188 158 216 0.72 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_71 - 284 cobW PF02492.14 178 0.00027 13.2 0.1 1 2 4e-05 0.0038 9.5 0.1 10 40 29 60 21 85 0.83 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 cobW PF02492.14 178 0.00027 13.2 0.1 2 2 0.011 1 1.6 0.0 64 99 123 159 116 228 0.71 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_24 - 62 IstB_IS21 PF01695.12 178 0.00066 12.0 0.0 1 1 7.1e-06 0.00068 11.9 0.0 45 65 3 23 2 44 0.89 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_71 - 284 MipZ PF09140.6 261 6.7e-13 41.1 0.2 1 2 1.3e-10 1.2e-08 27.1 0.0 2 59 20 76 19 102 0.88 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 MipZ PF09140.6 261 6.7e-13 41.1 0.2 2 2 5.2e-06 0.00049 12.0 0.0 85 130 130 175 110 223 0.75 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 YhjQ PF06564.7 244 4.4e-10 32.1 0.1 1 2 9.7e-07 9.2e-05 14.7 0.1 3 37 20 54 18 64 0.91 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 YhjQ PF06564.7 244 4.4e-10 32.1 0.1 2 2 3.3e-06 0.00031 12.9 0.0 73 231 101 270 91 274 0.68 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_43 - 1747 UvrD_C_2 PF13538.1 104 8e-07 22.1 0.1 1 2 0.025 2.4 1.3 0.0 5 67 1222 1311 1219 1313 0.60 # 35133 # 40373 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_43 - 1747 UvrD_C_2 PF13538.1 104 8e-07 22.1 0.1 2 2 2.3e-07 2.2e-05 17.4 0.0 3 100 1337 1438 1335 1442 0.75 # 35133 # 40373 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_27 - 877 DUF87 PF01935.12 229 3.5e-06 19.8 0.0 1 1 1.1e-07 1e-05 18.3 0.0 26 215 482 664 480 677 0.59 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_24 - 62 Septin PF00735.13 281 0.00026 12.9 0.0 1 1 2.7e-06 0.00026 12.9 0.0 5 33 6 34 3 59 0.66 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 AAA_22 PF13401.1 131 0.00033 13.7 0.1 1 1 5.7e-06 0.00054 13.0 0.1 4 31 5 32 2 60 0.77 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_73 - 226 Methyltransf_11 PF08241.7 95 0.00089 12.6 0.0 1 3 0.045 4.3 0.8 0.0 46 65 4 25 2 28 0.77 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_73 - 226 Methyltransf_11 PF08241.7 95 0.00089 12.6 0.0 2 3 0.0023 0.22 5.0 0.0 78 93 53 68 46 70 0.85 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_73 - 226 Methyltransf_11 PF08241.7 95 0.00089 12.6 0.0 3 3 0.012 1.1 2.7 0.0 6 41 173 207 169 223 0.73 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_71 - 284 SRP54 PF00448.17 196 5.8e-05 15.4 0.1 1 1 1.9e-06 0.00018 13.8 0.1 10 39 28 57 19 82 0.88 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_81 - 54 AAA_15 PF13175.1 415 0.00073 11.4 0.0 1 1 7.7e-06 0.00073 11.4 0.0 26 42 34 50 3 53 0.72 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_73 - 226 N6_N4_Mtase PF01555.13 231 1.4e-36 118.9 0.0 1 1 6.7e-36 6.4e-34 110.2 0.0 1 228 21 200 21 203 0.91 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_81 - 54 AAA_21 PF13304.1 303 2.7e-06 20.3 1.4 1 2 0.082 7.8 -0.9 0.0 263 269 22 28 3 31 0.69 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_81 - 54 AAA_21 PF13304.1 303 2.7e-06 20.3 1.4 2 2 2.9e-08 2.7e-06 20.3 1.4 3 21 34 52 33 53 0.91 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_81 - 54 Miro PF08477.8 119 3.5e-05 17.2 0.2 1 1 9.7e-07 4.6e-05 16.8 0.2 1 19 32 50 32 53 0.89 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_24 - 62 Miro PF08477.8 119 0.00021 14.6 0.0 1 1 4.5e-06 0.00021 14.6 0.0 1 21 7 27 7 56 0.80 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 MobB PF03205.9 140 1.3e-05 17.7 0.0 1 1 1.4e-07 1.3e-05 17.7 0.0 3 49 8 54 6 61 0.74 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_71 - 284 LpxK PF02606.9 326 0.00038 12.3 0.0 1 1 5.9e-06 0.00056 11.7 0.0 40 72 23 54 7 84 0.80 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 ArsA_ATPase PF02374.10 305 1.5e-06 20.3 0.0 1 2 6.4e-08 6.1e-06 18.2 0.0 5 39 23 57 19 81 0.87 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 ArsA_ATPase PF02374.10 305 1.5e-06 20.3 0.0 2 2 0.056 5.3 -1.3 0.0 120 136 135 153 101 155 0.65 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_24 - 62 PhoH PF02562.11 205 4.3e-05 15.6 0.0 1 1 4.5e-07 4.3e-05 15.6 0.0 18 51 4 37 1 58 0.79 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 T2SE PF00437.15 272 2.5e-05 16.1 0.0 1 1 2.9e-07 2.7e-05 16.0 0.0 127 149 4 26 2 42 0.78 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 Zeta_toxin PF06414.7 201 0.00016 13.6 0.4 1 1 1.1e-05 0.00035 12.5 0.1 15 40 4 29 2 37 0.83 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_71 - 284 Zeta_toxin PF06414.7 201 0.00034 12.5 0.0 1 1 2.3e-05 0.00073 11.5 0.0 17 52 20 57 8 81 0.87 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_42 - 731 Zeta_toxin PF06414.7 201 0.00064 11.7 0.0 1 1 0.00013 0.004 9.1 0.0 21 51 190 220 182 262 0.83 # 32941 # 35133 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_24 - 62 SMC_N PF02463.14 220 0.00017 13.7 0.0 1 1 3.5e-06 0.00017 13.7 0.0 26 58 7 40 2 56 0.80 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_81 - 54 SMC_N PF02463.14 220 0.00069 11.7 0.0 1 1 1.6e-05 0.00076 11.6 0.0 28 42 34 48 21 52 0.85 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_71 - 284 VirC1 PF07015.6 231 9.7e-08 24.1 0.1 1 2 4.5e-09 4.3e-07 22.0 0.0 3 54 20 71 18 101 0.76 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 VirC1 PF07015.6 231 9.7e-08 24.1 0.1 2 2 0.036 3.4 -0.5 0.0 82 119 142 184 133 196 0.66 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_71 - 284 Fer4_NifH PF00142.13 273 2.3e-09 29.6 0.1 1 1 4e-11 3.8e-09 28.9 0.1 3 51 21 70 19 85 0.88 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_42 - 731 AAA_16 PF13191.1 185 1.2e-06 21.4 0.0 1 1 2.3e-07 1.1e-05 18.3 0.0 20 55 181 225 177 267 0.67 # 32941 # 35133 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_24 - 62 AAA_16 PF13191.1 185 0.00035 13.4 0.1 1 1 8.7e-06 0.00041 13.2 0.1 22 47 3 28 1 53 0.74 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_81 - 54 AAA_23 PF13476.1 202 9.3e-05 15.6 0.0 1 1 9.8e-07 9.3e-05 15.6 0.0 24 39 35 50 13 53 0.88 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_71 - 284 CbiA PF01656.18 195 1.1e-32 105.8 0.0 1 1 3e-34 1.4e-32 105.5 0.0 1 194 21 245 21 246 0.74 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_24 - 62 CbiA PF01656.18 195 0.00055 12.2 0.0 1 1 1.2e-05 0.00058 12.1 0.0 4 24 10 30 8 48 0.86 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_81 - 54 AAA_29 PF13555.1 62 1.8e-05 17.1 0.1 1 1 4.8e-07 2.3e-05 16.8 0.1 19 40 27 47 14 51 0.78 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_24 - 62 AAA_29 PF13555.1 62 8.1e-05 15.0 0.5 1 1 3.3e-06 0.00016 14.1 0.5 22 46 4 29 1 40 0.77 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 Sigma54_activat PF00158.21 168 0.00058 12.2 0.0 1 1 6.2e-06 0.00059 12.2 0.0 21 44 4 27 1 42 0.79 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_81 - 54 MMR_HSR1 PF01926.18 116 0.00086 12.1 0.5 1 1 1.3e-05 0.0012 11.6 0.5 1 19 32 50 32 52 0.90 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_11 - 277 N6_Mtase PF02384.11 311 3.2e-11 35.6 0.0 1 1 4.6e-13 4.4e-11 35.2 0.0 24 120 137 239 128 261 0.83 # 7456 # 8286 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.564 1_81 - 54 DUF258 PF03193.11 161 0.0001 14.4 0.0 1 1 1.1e-06 0.0001 14.4 0.0 37 56 32 51 5 53 0.79 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_42 - 731 TraG-D_C PF12696.2 128 3.4e-19 61.9 0.0 1 1 2.1e-20 1e-18 60.3 0.0 1 127 419 541 419 542 0.85 # 32941 # 35133 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_27 - 877 TraG-D_C PF12696.2 128 0.00084 12.1 0.2 1 1 3.5e-05 0.0017 11.1 0.2 18 74 715 771 706 775 0.91 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_71 - 284 AAA_31 PF13614.1 157 1.1e-11 37.7 0.0 1 1 2.4e-13 2.3e-11 36.7 0.0 1 154 19 179 19 181 0.80 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_24 - 62 AAA_33 PF13671.1 143 0.00065 12.4 2.4 1 1 3.1e-05 0.003 10.3 2.4 2 22 8 28 8 58 0.68 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_73 - 226 Methyltransf_26 PF13659.1 117 3.3e-12 39.3 0.0 1 2 3.8e-08 1.8e-06 20.8 0.0 53 114 3 71 2 74 0.77 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_73 - 226 Methyltransf_26 PF13659.1 117 3.3e-12 39.3 0.0 2 2 8.8e-07 4.2e-05 16.4 0.0 4 44 167 206 164 220 0.82 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_11 - 277 Methyltransf_26 PF13659.1 117 0.00028 13.8 0.0 1 1 1.2e-05 0.00057 12.8 0.0 3 67 170 239 168 273 0.78 # 7456 # 8286 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.564 1_84 - 258 FmrO PF07091.6 251 3.9e-85 277.6 0.0 1 1 4.7e-87 4.4e-85 277.4 0.0 1 251 12 251 12 251 0.99 # 71134 # 71907 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_43 - 1747 AAA_30 PF13604.1 196 3.4e-42 137.0 7.9 1 2 0.00019 0.0092 8.4 2.5 8 149 419 552 415 559 0.86 # 35133 # 40373 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_43 - 1747 AAA_30 PF13604.1 196 3.4e-42 137.0 7.9 2 2 2e-41 9.3e-40 129.1 0.2 2 186 967 1155 966 1160 0.91 # 35133 # 40373 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_25 - 135 AAA_30 PF13604.1 196 0.00022 13.7 0.0 1 2 0.00011 0.0052 9.2 0.0 28 52 8 32 4 39 0.89 # 16806 # 17210 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_25 - 135 AAA_30 PF13604.1 196 0.00022 13.7 0.0 2 2 0.011 0.51 2.7 0.0 11 43 59 91 50 120 0.76 # 16806 # 17210 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.565 1_84 - 258 TehB PF03848.9 192 0.00074 11.5 2.3 1 1 3.7e-06 0.00035 12.6 0.2 32 112 108 190 66 207 0.86 # 71134 # 71907 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_27 - 877 FtsK_SpoIIIE PF01580.13 205 0.00011 14.5 0.2 1 1 7.5e-06 0.00036 12.9 0.0 39 63 476 504 459 507 0.85 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_24 - 62 FtsK_SpoIIIE PF01580.13 205 0.00023 13.5 1.1 1 1 6.1e-06 0.00029 13.2 0.9 38 54 5 21 2 36 0.85 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_84 - 258 MTS PF05175.9 170 3.6e-06 19.3 0.0 1 1 7.2e-08 6.8e-06 18.4 0.0 33 103 108 177 99 195 0.88 # 71134 # 71907 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_81 - 54 DUF2813 PF11398.3 373 0.0006 11.7 0.0 1 1 6.7e-06 0.00063 11.7 0.0 14 42 22 50 18 53 0.87 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_81 - 54 Dynamin_N PF00350.18 168 0.00078 12.1 0.8 1 1 9.9e-06 0.00094 11.8 0.8 1 20 33 52 33 53 0.90 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_81 - 54 ABC_tran PF00005.22 137 5.6e-09 29.3 0.0 1 1 6.6e-11 6.3e-09 29.1 0.0 5 33 24 52 20 53 0.90 # 68674 # 68835 # -1 # ID=1_81;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.377 1_73 - 226 Cons_hypoth95 PF03602.10 183 2.9e-05 16.3 0.0 1 2 0.00021 0.02 7.1 0.0 112 160 18 68 2 83 0.66 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_73 - 226 Cons_hypoth95 PF03602.10 183 2.9e-05 16.3 0.0 2 2 0.00017 0.016 7.4 0.0 41 62 162 183 145 213 0.80 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_42 - 731 DAP3 PF10236.4 309 0.00014 13.7 0.0 1 1 2.5e-06 0.00024 12.9 0.0 23 72 185 234 170 244 0.85 # 32941 # 35133 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_43 - 1747 AAA_19 PF13245.1 76 3e-08 26.2 0.9 1 1 3.1e-09 9.7e-08 24.6 0.1 6 75 978 1045 973 1046 0.78 # 35133 # 40373 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_71 - 284 AAA_19 PF13245.1 76 5.1e-05 15.9 0.1 1 1 3.8e-06 0.00012 14.7 0.1 20 51 29 56 27 67 0.88 # 58879 # 59730 # -1 # ID=1_71;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.515 1_24 - 62 AAA_19 PF13245.1 76 0.0006 12.4 0.0 1 1 2.1e-05 0.00066 12.3 0.0 11 37 7 32 3 52 0.80 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_27 - 877 AAA_10 PF12846.2 304 7.9e-47 152.9 0.0 1 1 4.1e-48 1.3e-46 152.2 0.0 1 294 479 770 479 776 0.88 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_42 - 731 AAA_10 PF12846.2 304 5.2e-09 28.7 0.0 1 1 2.9e-09 9.1e-08 24.6 0.0 3 296 187 494 186 499 0.72 # 32941 # 35133 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_24 - 62 AAA_10 PF12846.2 304 0.00049 12.4 0.0 1 1 1.6e-05 0.00052 12.3 0.0 2 25 6 29 5 48 0.82 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 ResIII PF04851.10 184 6.6e-05 15.6 0.5 1 1 7.6e-07 7.2e-05 15.5 0.5 24 49 4 29 2 59 0.87 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_84 - 258 Methyltransf_31 PF13847.1 152 0.0003 13.2 0.2 1 2 0.093 8.8 -1.3 0.0 95 98 39 42 7 89 0.58 # 71134 # 71907 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_84 - 258 Methyltransf_31 PF13847.1 152 0.0003 13.2 0.2 2 2 8.4e-06 0.00079 11.9 0.0 5 83 108 182 104 231 0.78 # 71134 # 71907 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 1_24 - 62 Zot PF05707.7 193 0.00063 12.1 0.0 1 1 7.5e-06 0.00071 11.9 0.0 4 27 9 31 7 47 0.86 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 PduV-EutP PF10662.4 143 0.0007 11.9 0.0 1 1 8.1e-06 0.00077 11.8 0.0 3 19 7 23 5 39 0.84 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_24 - 62 DEAD PF00270.24 169 5.1e-05 15.6 0.0 1 1 5.4e-07 5.1e-05 15.6 0.0 14 32 5 23 1 56 0.79 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_42 - 731 TrwB_AAD_bind PF10412.4 386 2e-148 486.9 0.0 1 1 7.8e-150 2.5e-148 486.6 0.0 2 385 172 560 171 561 0.99 # 32941 # 35133 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_27 - 877 TrwB_AAD_bind PF10412.4 386 1.3e-06 20.1 0.6 1 1 1.1e-07 3.6e-06 18.6 0.1 17 54 481 518 473 556 0.80 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_24 - 62 TrwB_AAD_bind PF10412.4 386 0.00025 12.5 0.1 1 1 8.6e-06 0.00027 12.4 0.1 14 41 4 31 1 37 0.85 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_43 - 1747 AAA_11 PF13086.1 236 2.1e-06 20.3 0.0 1 1 5.8e-08 5.5e-06 18.9 0.0 2 72 967 1034 966 1056 0.82 # 35133 # 40373 # 1 # ID=1_43;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.659 1_42 - 731 T4SS-DNA_transf PF02534.9 469 7.1e-09 27.5 0.0 1 1 5.3e-10 2.5e-08 25.7 0.0 219 371 332 486 198 512 0.78 # 32941 # 35133 # 1 # ID=1_42;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.581 1_27 - 877 T4SS-DNA_transf PF02534.9 469 0.00048 11.5 0.1 1 2 0.0072 0.34 2.1 0.0 105 181 533 605 470 686 0.79 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_27 - 877 T4SS-DNA_transf PF02534.9 469 0.00048 11.5 0.1 2 2 0.00026 0.012 6.9 0.2 321 378 715 771 703 773 0.94 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_73 - 226 MethyltransfD12 PF02086.10 260 0.0002 13.7 0.0 1 2 0.013 1.2 1.2 0.0 176 188 19 31 12 91 0.83 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_73 - 226 MethyltransfD12 PF02086.10 260 0.0002 13.7 0.0 2 2 2.3e-05 0.0022 10.3 0.0 20 46 163 189 148 197 0.78 # 60619 # 61296 # 1 # ID=1_73;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.603 1_27 - 877 Pox_A32 PF04665.7 241 0.00017 13.7 0.2 1 1 1.6e-05 0.00074 11.6 0.0 11 39 477 505 470 520 0.85 # 17759 # 20389 # 1 # ID=1_27;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.594 1_24 - 62 Pox_A32 PF04665.7 241 0.0005 12.2 0.1 1 1 1.1e-05 0.00055 12.1 0.1 13 38 5 30 1 35 0.85 # 16637 # 16822 # 1 # ID=1_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.468 1_84 - 258 Methyltransf_23 PF13489.1 161 7.8e-06 18.5 0.0 1 1 1.2e-07 1.1e-05 18.0 0.0 9 93 93 187 85 237 0.73 # 71134 # 71907 # -1 # ID=1_84;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.304 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/b2c08dac-b9ed-4923-b099-4b4377a288e3 # Target file: checkm_output/bins/pm873/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm873/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/b2c08dac-b9ed-4923-b099-4b4377a288e3 checkm_output/bins/pm873/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:40 2020 # [ok]