# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_7 - 234 UPF0020 PF01170.13 180 0.00011 14.6 0.0 1 2 5.3e-05 0.005 9.2 0.0 103 120 17 34 5 75 0.83 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_7 - 234 UPF0020 PF01170.13 180 0.00011 14.6 0.0 2 2 0.0031 0.29 3.5 0.0 28 43 170 185 165 221 0.81 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_1 - 209 cobW PF02492.14 178 0.00038 12.7 0.2 1 2 2.3e-05 0.0022 10.3 0.0 10 38 14 43 3 49 0.82 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_1 - 209 cobW PF02492.14 178 0.00038 12.7 0.2 2 2 0.031 2.9 0.1 0.0 114 146 117 149 74 161 0.77 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_1 - 209 MipZ PF09140.6 261 1.1e-13 43.6 0.8 1 2 1.1e-10 1e-08 27.3 0.0 2 47 5 49 4 59 0.87 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_1 - 209 MipZ PF09140.6 261 1.1e-13 43.6 0.8 2 2 6.6e-07 6.1e-05 15.0 0.2 96 141 75 120 58 150 0.84 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_16 - 179 SSB PF00436.20 104 1.5e-41 133.4 0.3 1 1 1.9e-43 1.8e-41 133.1 0.3 1 99 6 105 6 113 0.95 # 9722 # 10258 # 1 # ID=2_16;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.620 1_33 - 1753 UvrD_C_2 PF13538.1 104 1.4e-06 21.3 0.4 1 1 8.3e-08 7.8e-06 18.9 0.1 3 101 1339 1441 1337 1444 0.72 # 26469 # 31727 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_14 - 880 DUF87 PF01935.12 229 1.3e-05 17.9 0.0 1 1 6e-07 5.6e-05 15.8 0.0 26 221 484 673 481 681 0.76 # 7701 # 10340 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_24 - 439 AAA_22 PF13401.1 131 5.4e-08 25.9 0.1 1 1 1.9e-07 8.9e-06 18.7 0.1 4 127 54 288 49 290 0.79 # 18038 # 19354 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_33 - 1753 AAA_22 PF13401.1 131 0.00074 12.5 0.0 1 2 0.012 0.54 3.2 0.0 88 121 499 535 469 537 0.73 # 26469 # 31727 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_33 - 1753 AAA_22 PF13401.1 131 0.00074 12.5 0.0 2 2 0.0025 0.12 5.4 0.0 3 25 985 1007 982 1067 0.83 # 26469 # 31727 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 2_1 - 209 DUF1611 PF07755.6 301 4.3e-06 18.3 0.3 1 1 7.4e-08 6.9e-06 17.6 0.3 124 200 15 92 12 109 0.87 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_1 - 209 ATP_bind_1 PF03029.12 238 3.4e-05 16.3 0.1 1 1 5.7e-07 5.3e-05 15.6 0.1 6 42 14 50 12 76 0.87 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_7 - 234 N6_N4_Mtase PF01555.13 231 1.1e-30 99.6 0.0 1 2 1.1e-13 1e-11 37.5 0.0 1 113 21 130 21 140 0.86 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_7 - 234 N6_N4_Mtase PF01555.13 231 1.1e-30 99.6 0.0 2 2 1.3e-20 1.2e-18 60.3 0.0 171 227 150 206 139 210 0.93 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_1 - 209 MobB PF03205.9 140 6.3e-05 15.5 0.1 1 1 7.8e-06 0.00036 13.1 0.1 10 102 14 88 4 106 0.66 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_14 - 880 MobB PF03205.9 140 0.00048 12.7 0.0 1 1 0.00011 0.0051 9.3 0.0 3 28 484 509 482 523 0.86 # 7701 # 10340 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_23 - 733 Helicase_C PF00271.26 78 1.3e-13 43.5 0.0 1 1 3.8e-15 3.6e-13 42.1 0.0 10 76 295 362 293 364 0.96 # 15843 # 18041 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.477 2_1 - 209 ArsA_ATPase PF02374.10 305 5.8e-07 21.6 0.1 1 1 1e-08 9.5e-07 20.9 0.1 5 45 8 48 3 86 0.91 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_1 - 209 VirC1 PF07015.6 231 1.6e-14 46.3 0.2 1 1 4e-16 3.7e-14 45.1 0.2 1 130 3 124 3 159 0.80 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_1 - 209 Fer4_NifH PF00142.13 273 2.9e-07 22.7 0.0 1 1 5.3e-09 4.9e-07 21.9 0.0 8 64 12 68 5 92 0.90 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_24 - 439 AAA_16 PF13191.1 185 1.5e-08 27.6 0.1 1 1 7.2e-10 3.4e-08 26.5 0.1 3 86 33 118 32 312 0.87 # 18038 # 19354 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_32 - 765 AAA_16 PF13191.1 185 5.8e-06 19.2 0.0 1 1 5.1e-07 2.4e-05 17.2 0.0 21 56 182 218 179 254 0.78 # 24175 # 26469 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 209 CbiA PF01656.18 195 7.5e-28 90.0 1.3 1 1 1.7e-29 1.6e-27 88.9 1.3 2 143 7 126 6 172 0.74 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_32 - 278 N6_Mtase PF02384.11 311 3e-12 39.0 0.0 1 1 4.5e-14 4.2e-12 38.5 0.0 25 117 139 237 129 266 0.84 # 26143 # 26976 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_32 - 765 TraG-D_C PF12696.2 128 5.8e-20 64.3 0.0 1 1 1.5e-21 1.4e-19 63.0 0.0 1 127 419 541 419 542 0.88 # 24175 # 26469 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 209 AAA_31 PF13614.1 157 5.6e-07 22.4 0.2 1 2 2e-07 1.8e-05 17.5 0.0 1 40 4 43 4 67 0.91 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_1 - 209 AAA_31 PF13614.1 157 5.6e-07 22.4 0.2 2 2 0.0057 0.53 3.0 0.0 115 152 76 111 61 116 0.82 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 2_7 - 234 Methyltransf_26 PF13659.1 117 1.7e-09 30.5 0.1 1 2 7e-07 3.3e-05 16.8 0.0 63 113 13 70 3 75 0.70 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_7 - 234 Methyltransf_26 PF13659.1 117 1.7e-09 30.5 0.1 2 2 2.7e-05 0.0013 11.6 0.1 4 40 174 209 171 227 0.80 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_32 - 278 Methyltransf_26 PF13659.1 117 4.6e-05 16.3 0.1 1 1 2.8e-06 0.00013 14.8 0.1 3 68 171 241 170 271 0.83 # 26143 # 26976 # 1 # ID=2_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.550 1_33 - 1753 AAA_30 PF13604.1 196 6.8e-45 145.8 8.6 1 2 1.7e-06 7.9e-05 15.1 1.3 9 126 423 535 421 560 0.85 # 26469 # 31727 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_33 - 1753 AAA_30 PF13604.1 196 6.8e-45 145.8 8.6 2 2 1.2e-42 5.4e-41 133.1 1.0 2 186 970 1157 969 1161 0.95 # 26469 # 31727 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 2_1 - 209 AAA_30 PF13604.1 196 0.00031 13.1 0.3 1 1 1.3e-05 0.0006 12.2 0.3 21 106 7 90 1 99 0.76 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_14 - 880 FtsK_SpoIIIE PF01580.13 205 0.00011 14.4 0.0 1 1 2.8e-06 0.00026 13.3 0.0 39 63 478 506 459 508 0.85 # 7701 # 10340 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 2_7 - 234 Cons_hypoth95 PF03602.10 183 0.00013 14.2 0.0 1 2 0.00012 0.012 7.8 0.0 113 170 19 78 12 86 0.73 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_7 - 234 Cons_hypoth95 PF03602.10 183 0.00013 14.2 0.0 2 2 0.0015 0.14 4.3 0.0 41 60 169 188 157 216 0.78 # 4315 # 5016 # 1 # ID=2_7;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.613 2_24 - 439 DUF2791 PF10923.3 417 6.5e-172 564.5 0.0 1 1 7.9e-174 7.4e-172 564.3 0.0 1 416 6 413 6 414 0.99 # 18038 # 19354 # -1 # ID=2_24;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.480 1_33 - 1753 AAA_19 PF13245.1 76 5.3e-06 19.0 1.5 1 1 2.6e-07 2.4e-05 16.9 1.5 8 75 983 1047 975 1048 0.69 # 26469 # 31727 # 1 # ID=1_33;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.613 1_14 - 880 AAA_10 PF12846.2 304 6.2e-45 146.6 0.0 1 1 3.2e-46 1e-44 146.0 0.0 1 294 481 773 481 779 0.86 # 7701 # 10340 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_32 - 765 AAA_10 PF12846.2 304 1.9e-09 30.1 0.0 1 2 1.5e-05 0.00046 12.4 0.0 3 43 187 227 186 268 0.92 # 24175 # 26469 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_32 - 765 AAA_10 PF12846.2 304 1.9e-09 30.1 0.0 2 2 1.6e-06 5e-05 15.6 0.0 201 296 398 494 271 499 0.86 # 24175 # 26469 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 209 AAA_10 PF12846.2 304 7.4e-05 15.0 0.0 1 1 4.3e-06 0.00013 14.2 0.0 11 41 14 44 12 74 0.83 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 3_6 - 191 NodS PF05401.6 201 0.00071 11.8 0.0 1 2 0.049 4.5 -0.6 0.0 42 154 34 59 19 69 0.63 # 4453 # 5025 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 3_6 - 191 NodS PF05401.6 201 0.00071 11.8 0.0 2 2 2.8e-05 0.0026 9.9 0.0 25 70 99 144 87 172 0.84 # 4453 # 5025 # -1 # ID=3_6;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.674 2_23 - 733 DEAD PF00270.24 169 1.5e-31 102.0 0.0 1 1 2.9e-33 2.7e-31 101.1 0.0 2 167 26 200 25 202 0.87 # 15843 # 18041 # -1 # ID=2_23;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.477 2_28 - 292 Methyltransf_27 PF13708.1 194 1.2e-63 206.9 0.0 1 1 1.6e-65 1.5e-63 206.6 0.0 5 194 95 287 91 287 0.94 # 23460 # 24335 # 1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.587 1_32 - 765 TrwB_AAD_bind PF10412.4 386 2.4e-148 486.6 0.0 1 1 6.7e-150 3.1e-148 486.2 0.0 2 386 172 561 171 561 0.99 # 24175 # 26469 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_14 - 880 TrwB_AAD_bind PF10412.4 386 1e-05 17.1 0.1 1 1 5.6e-07 2.6e-05 15.7 0.0 16 96 482 558 474 569 0.76 # 7701 # 10340 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 1_32 - 765 T4SS-DNA_transf PF02534.9 469 8.6e-09 27.2 0.0 1 2 0.036 3.3 -1.1 0.0 128 199 260 330 249 356 0.72 # 24175 # 26469 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 1_32 - 765 T4SS-DNA_transf PF02534.9 469 8.6e-09 27.2 0.0 2 2 3.4e-10 3.2e-08 25.3 0.0 278 394 396 508 364 560 0.74 # 24175 # 26469 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.559 2_1 - 209 ArgK PF03308.11 267 0.00011 13.8 0.1 1 1 2.7e-06 0.00025 12.7 0.1 38 72 13 47 5 54 0.90 # 490 # 1116 # 1 # ID=2_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.431 1_14 - 880 Pox_A32 PF04665.7 241 0.00012 14.2 0.0 1 1 2.7e-06 0.00025 13.2 0.0 6 40 474 508 470 523 0.81 # 7701 # 10340 # 1 # ID=1_14;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.541 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/6cd13870-b587-41a8-8854-e0baffd7acf1 # Target file: checkm_output/bins/pm862/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm862/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/6cd13870-b587-41a8-8854-e0baffd7acf1 checkm_output/bins/pm862/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:32 2020 # [ok]