# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_20 - 677 UPF0020 PF01170.13 180 1e-05 16.4 0.0 1 1 2.2e-06 6.4e-05 13.7 0.0 31 125 209 311 202 318 0.76 # 16489 # 18519 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.544 1_5 - 490 RrnaAD PF00398.15 262 7.1e-05 13.0 0.0 1 1 3.7e-06 0.00011 12.4 0.0 12 92 30 123 20 152 0.78 # 2320 # 3789 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.625 1_2 - 214 MipZ PF09140.6 261 7e-15 45.9 1.7 1 1 2.5e-14 7.1e-13 39.3 1.7 2 134 2 116 1 141 0.84 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_2 - 214 YhjQ PF06564.7 244 0.00028 11.4 0.7 1 1 2.3e-05 0.00066 10.2 0.4 8 37 7 36 1 76 0.87 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_2 - 214 SRP54 PF00448.17 196 1.5e-05 15.7 0.7 1 1 7.4e-07 2.1e-05 15.1 0.7 6 97 4 94 1 105 0.76 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_2 - 214 ArsA_ATPase PF02374.10 305 6.2e-06 16.5 0.2 1 1 3.4e-07 9.8e-06 15.9 0.2 8 38 8 38 1 52 0.87 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_2 - 214 VirC1 PF07015.6 231 6.5e-08 23.0 0.0 1 1 3e-09 8.6e-08 22.6 0.0 3 191 2 190 1 207 0.78 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_2 - 214 CbiA PF01656.18 195 3.6e-25 79.6 0.0 1 1 1.9e-26 5.6e-25 79.0 0.0 1 194 3 182 3 183 0.79 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_20 - 677 N6_Mtase PF02384.11 311 4.4e-55 178.0 0.0 1 1 5e-56 7.3e-55 177.3 0.0 4 278 154 464 151 475 0.86 # 16489 # 18519 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.544 1_5 - 490 N6_Mtase PF02384.11 311 0.00014 12.1 0.0 1 2 5e-05 0.00072 9.8 0.0 17 60 19 64 15 75 0.81 # 2320 # 3789 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.625 1_5 - 490 N6_Mtase PF02384.11 311 0.00014 12.1 0.0 2 2 0.064 0.92 -0.4 0.0 129 184 133 185 110 226 0.79 # 2320 # 3789 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.625 1_2 - 214 AAA_31 PF13614.1 157 2.3e-06 18.8 0.1 1 2 5.5e-07 1.6e-05 16.0 0.0 2 41 2 41 1 48 0.88 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_2 - 214 AAA_31 PF13614.1 157 2.3e-06 18.8 0.1 2 2 0.035 1 0.4 0.0 115 147 78 109 70 117 0.71 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 1_5 - 490 Methyltransf_26 PF13659.1 117 2.5e-09 28.4 0.1 1 1 3.5e-10 5.1e-09 27.4 0.1 3 116 53 185 51 186 0.81 # 2320 # 3789 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.625 1_20 - 677 Methyltransf_26 PF13659.1 117 3.8e-09 27.8 0.0 1 2 0.044 0.64 1.3 0.0 22 70 60 130 5 167 0.71 # 16489 # 18519 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.544 1_20 - 677 Methyltransf_26 PF13659.1 117 3.8e-09 27.8 0.0 2 2 4.7e-09 6.8e-08 23.8 0.0 4 88 210 310 208 364 0.72 # 16489 # 18519 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.544 1_5 - 490 MTS PF05175.9 170 0.00012 12.7 0.0 1 1 1.6e-05 0.00047 10.7 0.0 20 140 37 184 28 192 0.66 # 2320 # 3789 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.625 1_5 - 490 Eco57I PF07669.6 106 3.3e-11 34.7 0.0 1 1 2.6e-12 7.6e-11 33.6 0.0 8 94 135 226 132 239 0.85 # 2320 # 3789 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.625 1_23 - 1083 ResIII PF04851.10 184 3.3e-14 44.3 0.2 1 1 2.3e-15 6.5e-14 43.3 0.2 3 183 290 493 288 494 0.76 # 20884 # 24132 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 1_23 - 1083 DEAD PF00270.24 169 7.8e-09 26.4 0.4 1 1 7.5e-10 2.2e-08 24.9 0.2 18 144 316 453 295 498 0.73 # 20884 # 24132 # 1 # ID=1_23;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.564 1_5 - 490 TIGR00755 TIGR00755 256 0.00015 11.9 0.0 1 1 8.4e-06 0.00024 11.2 0.0 6 105 26 140 21 155 0.68 # 2320 # 3789 # -1 # ID=1_5;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.625 1_2 - 214 AAA_25 PF13481.1 194 3.8e-05 14.3 0.0 1 1 2.4e-06 7e-05 13.4 0.0 42 67 10 39 4 88 0.77 # 333 # 974 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.654 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4eb73cba-82bb-4a04-9394-bc01511fb3a6 # Target file: checkm_output/bins/pm854/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm854/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4eb73cba-82bb-4a04-9394-bc01511fb3a6 checkm_output/bins/pm854/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:24 2020 # [ok]