# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_17 - 490 RrnaAD PF00398.15 262 5.1e-05 13.0 0.0 1 1 3.7e-06 7.8e-05 12.4 0.0 12 92 30 123 20 152 0.78 # 18341 # 19810 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.624 1_20 - 214 MipZ PF09140.6 261 5.1e-15 45.9 1.7 1 1 2.5e-14 5.2e-13 39.3 1.7 2 134 2 116 1 141 0.84 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 214 YhjQ PF06564.7 244 0.00021 11.4 0.7 1 1 2.3e-05 0.00048 10.2 0.4 8 37 7 36 1 76 0.87 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 214 SRP54 PF00448.17 196 1.1e-05 15.7 0.7 1 1 7.4e-07 1.6e-05 15.1 0.7 6 97 4 94 1 105 0.76 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 214 ArsA_ATPase PF02374.10 305 4.5e-06 16.5 0.2 1 1 3.4e-07 7.1e-06 15.9 0.2 8 38 8 38 1 52 0.87 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 214 VirC1 PF07015.6 231 4.7e-08 23.0 0.0 1 1 3e-09 6.3e-08 22.6 0.0 3 191 2 190 1 207 0.78 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 214 CbiA PF01656.18 195 2.6e-25 79.6 0.0 1 1 1.9e-26 4.1e-25 79.0 0.0 1 194 3 182 3 183 0.79 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_17 - 490 N6_Mtase PF02384.11 311 0.0001 12.1 0.0 1 2 2.5e-05 0.00052 9.8 0.0 17 60 19 64 15 75 0.81 # 18341 # 19810 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.624 1_17 - 490 N6_Mtase PF02384.11 311 0.0001 12.1 0.0 2 2 0.032 0.67 -0.4 0.0 129 184 133 185 110 226 0.79 # 18341 # 19810 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.624 1_20 - 214 AAA_31 PF13614.1 157 1.7e-06 18.8 0.1 1 2 5.5e-07 1.2e-05 16.0 0.0 2 41 2 41 1 48 0.88 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_20 - 214 AAA_31 PF13614.1 157 1.7e-06 18.8 0.1 2 2 0.035 0.74 0.4 0.0 115 147 78 109 70 117 0.71 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 1_17 - 490 Methyltransf_26 PF13659.1 117 1.8e-09 28.4 0.1 1 1 1.7e-10 3.7e-09 27.4 0.1 3 116 53 185 51 186 0.81 # 18341 # 19810 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.624 1_17 - 490 MTS PF05175.9 170 8.6e-05 12.7 0.0 1 1 1.6e-05 0.00034 10.7 0.0 20 140 37 184 28 192 0.66 # 18341 # 19810 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.624 1_17 - 490 Eco57I PF07669.6 106 2.4e-11 34.7 0.0 1 1 2.6e-12 5.5e-11 33.6 0.0 8 94 135 226 132 239 0.85 # 18341 # 19810 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.624 1_17 - 490 TIGR00755 TIGR00755 256 0.00011 11.9 0.0 1 1 8.4e-06 0.00018 11.2 0.0 6 105 26 140 21 155 0.68 # 18341 # 19810 # 1 # ID=1_17;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.624 1_20 - 214 AAA_25 PF13481.1 194 2.7e-05 14.3 0.0 1 1 2.4e-06 5.1e-05 13.4 0.0 42 67 10 39 4 88 0.77 # 21156 # 21797 # 1 # ID=1_20;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.651 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/96ecf8f3-3afc-4f62-a849-30c10c92a219 # Target file: checkm_output/bins/pm852/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm852/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/96ecf8f3-3afc-4f62-a849-30c10c92a219 checkm_output/bins/pm852/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:23 2020 # [ok]