# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_9 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 1 2 1.2e-12 1.1e-10 33.8 0.0 2 53 2 52 1 60 0.89 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 MipZ PF09140.6 261 1.7e-21 69.2 0.5 2 2 1.6e-12 1.5e-10 33.4 0.0 87 140 65 118 58 128 0.92 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 1 2 1.8e-06 0.00017 13.8 0.3 4 38 3 37 1 50 0.89 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 YhjQ PF06564.7 244 2.2e-05 16.7 0.3 2 2 0.029 2.8 0.0 0.0 108 144 69 103 44 113 0.78 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_68 - 383 DUF87 PF01935.12 229 4e-05 16.3 0.0 1 1 1.5e-06 7.3e-05 15.5 0.0 28 49 162 183 161 192 0.83 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_31 - 767 DUF87 PF01935.12 229 0.00088 11.9 0.1 1 2 0.00046 0.022 7.4 0.0 16 40 130 153 120 168 0.80 # 23204 # 25504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_31 - 767 DUF87 PF01935.12 229 0.00088 11.9 0.1 2 2 0.022 1.1 1.8 0.1 112 174 641 702 619 734 0.67 # 23204 # 25504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_68 - 383 NB-ARC PF00931.17 287 0.00041 12.1 0.0 1 1 8.8e-06 0.00082 11.0 0.0 18 49 156 185 145 193 0.78 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 AAA_22 PF13401.1 131 5.5e-06 19.4 0.0 1 1 2.3e-07 1.1e-05 18.4 0.0 4 49 229 281 226 349 0.82 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_68 - 383 AAA_22 PF13401.1 131 6.4e-06 19.2 0.0 1 1 2.6e-07 1.2e-05 18.3 0.0 3 45 156 195 153 233 0.75 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 209 SRP54 PF00448.17 196 2.3e-07 23.2 0.1 1 1 1.5e-08 1.4e-06 20.7 0.1 4 98 2 91 1 134 0.80 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 AAA_17 PF13207.1 121 1.4e-05 18.7 0.0 1 1 1.2e-06 3.9e-05 17.3 0.0 9 77 11 84 9 205 0.75 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_82 - 503 AAA_17 PF13207.1 121 0.00014 15.5 0.2 1 1 1.3e-05 0.00042 14.0 0.1 1 32 231 264 231 353 0.79 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_68 - 383 AAA_17 PF13207.1 121 0.00016 15.3 0.0 1 1 1.2e-05 0.00038 14.1 0.0 3 24 161 184 161 250 0.72 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 209 MobB PF03205.9 140 5.3e-05 15.8 0.1 1 1 3.2e-06 0.00015 14.3 0.0 10 42 11 41 1 46 0.79 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_68 - 383 MobB PF03205.9 140 0.00091 11.8 0.0 1 1 3.7e-05 0.0017 10.9 0.0 5 27 162 184 160 196 0.85 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 1 3 1.2e-09 1.1e-07 24.0 0.1 3 48 3 48 1 69 0.85 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 2 3 0.053 5 -1.2 0.0 121 135 69 85 47 86 0.75 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 ArsA_ATPase PF02374.10 305 4.1e-08 25.4 0.9 3 3 0.075 7.1 -1.7 0.0 205 234 132 161 118 202 0.65 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_68 - 383 PhoH PF02562.11 205 4.3e-05 15.6 0.0 1 1 8.4e-07 7.9e-05 14.8 0.0 15 61 153 199 141 230 0.87 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 T2SE PF00437.15 272 1.7e-37 121.6 0.0 1 1 6.2e-39 2.9e-37 120.8 0.0 66 269 161 378 142 380 0.86 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_68 - 383 T2SE PF00437.15 272 2.8e-35 114.3 0.0 1 1 9e-37 4.2e-35 113.7 0.0 109 261 142 292 23 309 0.77 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 209 VirC1 PF07015.6 231 3.2e-09 29.0 0.0 1 1 7.1e-11 6.7e-09 27.9 0.0 3 172 2 164 1 206 0.74 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 Fer4_NifH PF00142.13 273 7e-05 14.9 0.2 1 1 2.3e-06 0.00022 13.3 0.0 8 38 9 39 2 46 0.89 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_68 - 383 AAA_16 PF13191.1 185 7.7e-06 18.8 0.1 1 1 5.8e-07 2.7e-05 17.0 0.0 25 56 158 192 148 336 0.80 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 AAA_16 PF13191.1 185 0.00011 15.0 0.0 1 1 5.1e-06 0.00024 13.9 0.0 21 51 226 256 215 338 0.85 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_68 - 383 AAA_23 PF13476.1 202 3e-05 17.2 0.1 1 1 1.4e-06 6.5e-05 16.1 0.0 20 39 158 177 144 194 0.85 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 AAA_23 PF13476.1 202 0.00033 13.8 0.1 1 1 1.3e-05 0.00061 12.9 0.1 20 37 230 247 218 264 0.90 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_68 - 383 AAA_18 PF13238.1 129 7.6e-06 19.1 0.0 1 1 2.8e-07 1.3e-05 18.3 0.0 2 38 161 199 161 245 0.71 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 AAA_18 PF13238.1 129 0.00067 12.8 0.4 1 1 3.4e-05 0.0016 11.6 0.2 1 18 232 249 232 267 0.87 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_9 - 209 CbiA PF01656.18 195 1.7e-22 72.6 0.0 1 1 3.1e-24 2.9e-22 71.8 0.0 1 158 3 141 3 179 0.75 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_68 - 383 AAA_29 PF13555.1 62 2.1e-05 16.8 0.1 1 1 1.1e-06 5.4e-05 15.6 0.1 25 43 159 177 149 183 0.83 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 AAA_29 PF13555.1 62 2.6e-05 16.6 0.0 1 1 1.3e-06 6.3e-05 15.3 0.0 20 40 227 246 218 260 0.84 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_68 - 383 Sigma54_activat PF00158.21 168 0.00044 12.6 0.0 1 1 9e-06 0.00084 11.6 0.0 26 47 161 182 145 194 0.79 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_31 - 767 TraG-D_C PF12696.2 128 1.9e-08 27.1 4.1 1 2 2.2e-10 2.1e-08 27.0 0.2 1 86 437 522 437 558 0.83 # 23204 # 25504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_31 - 767 TraG-D_C PF12696.2 128 1.9e-08 27.1 4.1 2 2 0.064 6 -0.4 0.0 71 95 622 645 614 670 0.60 # 23204 # 25504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_9 - 209 AAA_31 PF13614.1 157 4e-06 19.6 0.0 1 2 2.5e-07 2.4e-05 17.1 0.0 2 42 2 42 1 55 0.88 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 AAA_31 PF13614.1 157 4e-06 19.6 0.0 2 2 0.055 5.1 -0.2 0.0 109 127 68 86 62 113 0.68 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_68 - 383 AAA_33 PF13671.1 143 0.00042 13.0 0.1 1 1 1.6e-05 0.0015 11.2 0.0 3 21 161 179 159 196 0.90 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 AAA_30 PF13604.1 196 2.5e-07 23.3 0.0 1 1 4.9e-09 4.6e-07 22.4 0.0 2 45 213 256 212 263 0.91 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_68 - 383 FtsK_SpoIIIE PF01580.13 205 0.0008 11.7 0.0 1 1 1.6e-05 0.0015 10.8 0.0 40 59 159 178 122 186 0.84 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_68 - 383 ABC_tran PF00005.22 137 2.1e-05 17.6 0.1 1 1 1.2e-06 5.7e-05 16.3 0.0 15 34 161 180 150 200 0.87 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_82 - 503 ABC_tran PF00005.22 137 0.00046 13.3 0.0 1 1 1.7e-05 0.00082 12.5 0.0 13 37 231 255 226 364 0.91 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_82 - 503 AAA_19 PF13245.1 76 8.7e-05 15.1 0.7 1 1 4.3e-06 0.0002 13.9 0.1 5 36 223 255 219 272 0.71 # 68350 # 69858 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGAGG;rbs_spacer=3-4bp;gc_cont=0.567 1_9 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 1 2 0.00019 0.0091 8.6 0.0 20 48 11 35 9 44 0.84 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_9 - 209 AAA_19 PF13245.1 76 0.00027 13.5 0.1 2 2 0.021 1 2.1 0.0 42 63 135 158 118 184 0.76 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_48 - 1015 AAA_10 PF12846.2 304 1.7e-31 102.5 0.0 1 1 1.4e-32 3.4e-31 101.6 0.0 8 303 502 898 498 899 0.89 # 37926 # 40970 # -1 # ID=1_48;partial=00;start_type=ATG;rbs_motif=AGGA/GGAG/GAGG;rbs_spacer=11-12bp;gc_cont=0.567 1_31 - 767 AAA_10 PF12846.2 304 1.1e-06 21.0 0.1 1 1 1.1e-07 2.5e-06 19.9 0.1 2 292 137 506 136 516 0.72 # 23204 # 25504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_68 - 383 AAA_10 PF12846.2 304 5.4e-06 18.8 0.0 1 2 4.2e-06 9.9e-05 14.7 0.0 3 26 159 182 157 196 0.88 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_68 - 383 AAA_10 PF12846.2 304 5.4e-06 18.8 0.0 2 2 0.036 0.86 1.7 0.0 193 248 290 348 259 352 0.76 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 209 AAA_10 PF12846.2 304 0.00015 14.1 0.0 1 1 1e-05 0.00024 13.4 0.0 11 39 11 39 3 66 0.90 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 1_27 - 283 Methyltransf_27 PF13708.1 194 5.4e-67 217.9 0.0 1 1 8e-69 7.5e-67 217.4 0.0 2 194 85 278 84 278 0.96 # 18417 # 19265 # 1 # ID=1_27;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.506 1_31 - 767 TrwB_AAD_bind PF10412.4 386 5.3e-06 18.0 0.2 1 2 0.00041 0.039 5.3 0.0 11 32 132 153 126 164 0.80 # 23204 # 25504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_31 - 767 TrwB_AAD_bind PF10412.4 386 5.3e-06 18.0 0.2 2 2 1.4e-05 0.0013 10.1 0.1 260 332 452 525 425 578 0.76 # 23204 # 25504 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.533 1_68 - 383 RNA_helicase PF00910.17 107 2.9e-05 17.0 0.0 1 1 6.3e-07 6e-05 16.1 0.0 2 29 161 188 160 202 0.83 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_94 - 218 TIGR00922 TIGR00922 172 0.00027 13.3 0.0 1 1 3.4e-06 0.00032 13.1 0.0 54 104 109 159 60 180 0.87 # 78518 # 79171 # -1 # ID=1_94;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.538 1_68 - 383 AAA_25 PF13481.1 194 6.4e-07 21.8 0.0 1 1 2.2e-08 1e-06 21.1 0.0 21 65 146 187 127 232 0.79 # 56568 # 57716 # -1 # ID=1_68;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.539 1_9 - 209 AAA_25 PF13481.1 194 0.00011 14.4 0.1 1 1 6.2e-06 0.00029 13.1 0.0 42 87 10 44 3 90 0.78 # 6657 # 7283 # -1 # ID=1_9;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.429 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/28bf8fb3-781e-40c7-9420-e544a727782c # Target file: checkm_output/bins/pm849/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm849/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/28bf8fb3-781e-40c7-9420-e544a727782c checkm_output/bins/pm849/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:23 2020 # [ok]