# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_58 - 188 Methyltransf_12 PF08242.7 99 8.7e-05 16.7 0.0 1 1 7.6e-07 0.00013 16.1 0.0 1 99 55 144 55 144 0.84 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_69 - 228 UPF0020 PF01170.13 180 3.4e-07 23.6 0.0 1 2 1.6e-05 0.0027 10.9 0.0 102 143 16 57 5 90 0.74 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_69 - 228 UPF0020 PF01170.13 180 3.4e-07 23.6 0.0 2 2 1.7e-05 0.0029 10.8 0.0 28 54 163 189 158 221 0.66 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_9 - 535 cobW PF02492.14 178 0.00011 15.3 0.1 1 1 9e-06 0.00077 12.6 0.0 3 33 256 288 254 310 0.77 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_82 - 742 cobW PF02492.14 178 0.00072 12.7 0.0 1 1 1.4e-05 0.0012 11.9 0.0 2 23 48 71 47 82 0.77 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_58 - 188 RrnaAD PF00398.15 262 1e-08 28.2 0.0 1 1 7.6e-11 1.3e-08 27.8 0.0 9 113 29 128 24 148 0.89 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 3_9 - 535 Rad17 PF03215.10 519 9.7e-06 18.1 0.1 1 1 2.3e-07 2e-05 17.1 0.0 47 91 255 299 241 316 0.83 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_11 - 319 Rad17 PF03215.10 519 0.00027 13.3 0.0 1 1 5e-06 0.00043 12.7 0.0 35 74 104 143 100 162 0.85 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_77 - 215 MipZ PF09140.6 261 4.1e-08 26.2 2.3 1 2 0.0008 0.14 4.8 0.5 7 25 8 26 2 38 0.71 # 54836 # 55480 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_77 - 215 MipZ PF09140.6 261 4.1e-08 26.2 2.3 2 2 9e-09 1.5e-06 21.1 0.1 70 133 45 108 25 125 0.84 # 54836 # 55480 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_56 - 176 SSB PF00436.20 104 1.3e-40 131.1 0.3 1 1 9.9e-43 1.7e-40 130.8 0.3 1 101 6 109 6 112 0.95 # 40621 # 41148 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_58 - 188 Methyltransf_18 PF12847.2 112 7.5e-10 33.1 0.0 1 1 9.4e-12 1.6e-09 32.0 0.0 4 109 53 146 50 148 0.89 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 4_13 - 1045 UvrD_C_2 PF13538.1 104 6.9e-08 26.3 0.8 1 2 0.0068 1.2 3.1 0.0 6 45 515 554 511 583 0.74 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 4_13 - 1045 UvrD_C_2 PF13538.1 104 6.9e-08 26.3 0.8 2 2 2.1e-08 3.6e-06 20.8 0.2 3 102 629 732 627 734 0.77 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_28 - 877 DUF87 PF01935.12 229 4e-07 23.7 0.0 1 1 2.7e-08 1.1e-06 22.2 0.0 26 221 483 669 469 677 0.75 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 3_9 - 535 DUF87 PF01935.12 229 1.5e-05 18.6 0.2 1 1 1.2e-06 5.1e-05 16.8 0.0 28 56 258 288 256 297 0.83 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_11 - 319 DUF87 PF01935.12 229 0.0011 12.4 0.3 1 1 4.5e-05 0.0019 11.6 0.3 27 48 118 139 116 149 0.82 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_35 - 107 DUF87 PF01935.12 229 0.0016 11.9 0.0 1 1 5.6e-05 0.0024 11.3 0.0 25 50 74 99 68 103 0.91 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_9 - 535 AAA_22 PF13401.1 131 4.6e-07 23.7 0.0 1 1 1.4e-08 1.2e-06 22.3 0.0 5 85 254 329 249 376 0.77 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_11 - 319 AAA_22 PF13401.1 131 0.00022 15.1 0.0 1 1 4.1e-06 0.00035 14.4 0.0 3 31 113 141 110 218 0.83 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_69 - 228 Methyltransf_11 PF08241.7 95 0.0019 12.4 0.3 1 2 0.0014 0.24 5.7 0.1 77 93 52 68 2 70 0.76 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_69 - 228 Methyltransf_11 PF08241.7 95 0.0019 12.4 0.3 2 2 0.0085 1.5 3.1 0.0 5 53 172 219 168 226 0.74 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_9 - 535 SRP54 PF00448.17 196 0.0017 11.5 0.0 1 1 1.7e-05 0.0029 10.7 0.0 5 37 257 290 254 330 0.75 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_82 - 742 KAP_NTPase PF07693.9 325 5.4e-70 229.5 0.0 1 1 4.7e-72 8e-70 229.0 0.0 1 325 27 334 27 334 0.96 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_69 - 228 N6_N4_Mtase PF01555.13 231 2.8e-35 115.5 0.0 1 2 5.6e-15 9.6e-13 41.8 0.0 1 114 21 124 21 140 0.87 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_69 - 228 N6_N4_Mtase PF01555.13 231 2.8e-35 115.5 0.0 2 2 2.3e-24 4e-22 72.5 0.0 169 226 141 198 123 203 0.90 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_9 - 535 AAA_17 PF13207.1 121 5.2e-07 24.2 0.1 1 1 3.6e-08 2e-06 22.3 0.0 3 77 257 337 255 432 0.70 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_11 - 319 AAA_17 PF13207.1 121 0.00038 15.0 0.1 1 1 1.5e-05 0.00085 13.8 0.1 2 33 117 153 116 267 0.74 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_3 - 730 AAA_17 PF13207.1 121 0.00052 14.5 0.0 1 1 2.6e-05 0.0015 13.0 0.0 3 28 189 218 187 298 0.70 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_88 - 658 AAA_21 PF13304.1 303 0.00031 14.4 0.3 1 1 5.8e-06 0.00099 12.7 0.1 219 298 331 432 248 434 0.75 # 64388 # 66361 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 3_9 - 535 MobB PF03205.9 140 0.00044 13.6 0.0 1 1 2.8e-05 0.0016 11.8 0.0 3 35 256 288 254 330 0.78 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_28 - 877 MobB PF03205.9 140 0.001 12.4 0.1 1 1 8.1e-05 0.0046 10.3 0.0 4 37 484 516 482 524 0.79 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_3 - 730 MobB PF03205.9 140 0.0018 11.6 0.0 1 1 7.8e-05 0.0045 10.4 0.0 7 34 192 219 188 225 0.89 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 4_13 - 1045 PhoH PF02562.11 205 0.00011 15.1 0.2 1 1 2.2e-06 0.00037 13.4 0.1 3 61 255 317 253 336 0.85 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 3_9 - 535 T2SE PF00437.15 272 1.8e-39 128.9 0.0 1 1 4.8e-41 4.1e-39 127.7 0.0 11 271 120 401 112 402 0.80 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_11 - 319 T2SE PF00437.15 272 2.3e-30 99.0 0.0 1 1 3.6e-32 3.1e-30 98.6 0.0 94 259 84 253 41 266 0.77 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_3 - 730 Zeta_toxin PF06414.7 201 0.0013 11.5 0.0 1 1 3.5e-05 0.006 9.3 0.0 21 49 190 219 182 235 0.85 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_77 - 215 VirC1 PF07015.6 231 0.0007 12.4 0.0 1 2 0.00073 0.12 5.0 0.0 3 29 3 29 1 36 0.81 # 54836 # 55480 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 1_77 - 215 VirC1 PF07015.6 231 0.0007 12.4 0.0 2 2 0.00052 0.088 5.5 0.0 87 190 77 181 59 194 0.70 # 54836 # 55480 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 3_9 - 535 Arch_ATPase PF01637.13 234 6.8e-05 16.3 0.0 1 1 7.5e-07 0.00013 15.4 0.0 22 73 255 314 246 374 0.82 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_3 - 730 AAA_16 PF13191.1 185 6.3e-06 19.9 0.0 1 1 1.2e-06 3.3e-05 17.6 0.0 21 61 182 223 179 264 0.80 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_11 - 319 AAA_16 PF13191.1 185 3.4e-05 17.5 0.1 1 1 1.9e-06 5.3e-05 16.9 0.1 19 57 109 148 103 265 0.85 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 3_9 - 535 AAA_16 PF13191.1 185 0.00025 14.7 0.1 1 1 2.1e-05 0.00061 13.5 0.1 16 48 245 277 239 404 0.88 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_82 - 742 AAA_16 PF13191.1 185 0.00032 14.4 0.8 1 1 8.8e-05 0.0025 11.5 0.2 24 58 46 83 35 229 0.82 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_35 - 107 AAA_16 PF13191.1 185 0.00083 13.0 0.0 1 1 4.3e-05 0.0012 12.5 0.0 22 51 70 99 61 104 0.90 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 4_13 - 1045 AAA_16 PF13191.1 185 0.031 7.9 7.2 1 2 0.0038 0.11 6.1 0.0 23 46 272 295 255 303 0.82 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 4_13 - 1045 AAA_16 PF13191.1 185 0.031 7.9 7.2 2 2 0.029 0.82 3.2 0.1 52 120 379 461 363 520 0.59 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 3_9 - 535 AAA_23 PF13476.1 202 4e-07 24.2 0.0 1 1 9.5e-09 8.1e-07 23.2 0.0 20 50 254 284 235 432 0.78 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_11 - 319 AAA_23 PF13476.1 202 8.8e-05 16.5 0.2 1 1 2.6e-06 0.00022 15.2 0.1 18 39 113 134 99 144 0.86 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 3_9 - 535 AAA_18 PF13238.1 129 1.1e-07 25.9 0.0 1 1 2.2e-09 3.7e-07 24.2 0.0 2 116 257 381 257 390 0.81 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_88 - 658 AAA_13 PF13166.1 712 1.1e-18 60.6 0.9 1 3 0.00096 0.16 3.9 0.3 61 129 24 96 6 108 0.75 # 64388 # 66361 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_88 - 658 AAA_13 PF13166.1 712 1.1e-18 60.6 0.9 2 3 1e-06 0.00017 13.7 0.6 158 390 60 328 53 331 0.59 # 64388 # 66361 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_88 - 658 AAA_13 PF13166.1 712 1.1e-18 60.6 0.9 3 3 2.2e-15 3.7e-13 42.4 0.0 460 572 320 434 254 454 0.77 # 64388 # 66361 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 1_77 - 215 CbiA PF01656.18 195 2.1e-09 30.7 0.1 1 1 1.8e-11 3.1e-09 30.2 0.1 1 145 4 124 4 173 0.79 # 54836 # 55480 # -1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.428 3_11 - 319 AAA_14 PF13173.1 128 8.5e-07 22.6 0.0 1 1 1.9e-08 1.6e-06 21.7 0.0 2 86 114 216 113 240 0.71 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 3_9 - 535 AAA_14 PF13173.1 128 5.1e-06 20.1 0.1 1 1 2.3e-07 2e-05 18.2 0.0 4 46 255 299 253 338 0.80 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_9 - 535 AAA_29 PF13555.1 62 1.8e-06 21.1 0.0 1 1 4.3e-08 3.6e-06 20.1 0.0 25 58 255 288 237 292 0.81 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_11 - 319 AAA_29 PF13555.1 62 7.8e-06 19.1 0.2 1 1 2e-07 1.7e-05 18.0 0.2 23 45 115 136 105 142 0.83 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_58 - 188 N6_Mtase PF02384.11 311 0.00039 13.2 0.0 1 2 2.7e-05 0.0045 9.7 0.0 28 64 32 68 21 84 0.88 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_58 - 188 N6_Mtase PF02384.11 311 0.00039 13.2 0.0 2 2 0.014 2.4 0.7 0.0 127 137 114 124 103 134 0.82 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_3 - 730 TraG-D_C PF12696.2 128 1.3e-20 67.2 0.0 1 1 1.4e-22 2.4e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_9 - 535 AAA_33 PF13671.1 143 0.00022 14.8 0.0 1 2 0.023 3.9 1.0 0.0 70 103 46 79 42 96 0.85 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_9 - 535 AAA_33 PF13671.1 143 0.00022 14.8 0.0 2 2 1.9e-05 0.0033 11.0 0.0 3 22 257 276 255 333 0.90 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_58 - 188 Methyltransf_26 PF13659.1 117 4.5e-13 43.0 0.0 1 1 9.5e-15 8.1e-13 42.1 0.0 2 114 52 147 51 150 0.91 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_69 - 228 Methyltransf_26 PF13659.1 117 2.6e-12 40.5 0.1 1 2 2.2e-08 1.9e-06 21.6 0.0 54 114 4 71 2 74 0.75 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_69 - 228 Methyltransf_26 PF13659.1 117 2.6e-12 40.5 0.1 2 2 6.3e-07 5.4e-05 16.9 0.0 4 34 167 196 164 221 0.79 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 4_13 - 1045 AAA_30 PF13604.1 196 9.7e-41 133.1 2.3 1 1 1.1e-42 9.7e-41 133.1 2.3 1 186 256 444 256 448 0.94 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_3 - 730 AAA_30 PF13604.1 196 0.001 12.3 0.0 1 1 2.6e-05 0.0022 11.2 0.0 21 57 188 224 180 230 0.85 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_35 - 107 FtsK_SpoIIIE PF01580.13 205 2.7e-06 20.6 0.0 1 1 7.6e-08 3.3e-06 20.4 0.0 13 66 45 100 35 103 0.81 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 3e-05 17.2 0.2 1 2 8.1e-06 0.00035 13.7 0.0 39 63 477 505 464 508 0.84 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_28 - 877 FtsK_SpoIIIE PF01580.13 205 3e-05 17.2 0.2 2 2 0.072 3.1 0.9 0.0 75 166 531 626 530 635 0.75 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 3_11 - 319 FtsK_SpoIIIE PF01580.13 205 5.3e-05 16.4 0.1 1 1 2.2e-06 9.4e-05 15.6 0.1 37 63 113 139 96 144 0.80 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 3_9 - 535 FtsK_SpoIIIE PF01580.13 205 0.00089 12.4 0.0 1 1 3.4e-05 0.0015 11.7 0.0 42 74 257 288 223 329 0.73 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_58 - 188 MTS PF05175.9 170 4.5e-09 29.5 0.0 1 1 3.7e-11 6.3e-09 29.1 0.0 24 141 45 149 41 166 0.84 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_58 - 188 Methyltrans_SAM PF10672.4 286 0.0015 11.0 0.0 1 1 1.3e-05 0.0022 10.5 0.0 196 261 113 173 99 179 0.78 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_82 - 742 ABC_tran PF00005.22 137 4e-05 17.6 0.0 1 1 4.3e-06 0.00015 15.8 0.0 5 36 40 71 37 85 0.89 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 3_11 - 319 ABC_tran PF00005.22 137 7.8e-05 16.7 0.0 1 1 3.9e-06 0.00013 15.9 0.0 9 48 112 151 104 222 0.84 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_88 - 658 ABC_tran PF00005.22 137 0.0002 15.3 0.0 1 1 6.6e-05 0.0023 11.9 0.0 87 136 343 397 214 398 0.75 # 64388 # 66361 # -1 # ID=1_88;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.502 3_9 - 535 ABC_tran PF00005.22 137 0.00025 15.0 0.0 1 1 1.9e-05 0.00064 13.7 0.0 16 37 258 279 254 343 0.80 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_28 - 877 ABC_tran PF00005.22 137 0.0017 12.4 0.0 1 1 0.00015 0.005 10.8 0.0 13 102 482 611 477 620 0.60 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 3_9 - 535 TIGR03263 TIGR03263 180 0.0012 11.8 0.0 1 1 1.6e-05 0.0028 10.7 0.0 4 23 256 275 254 301 0.85 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_69 - 228 Cons_hypoth95 PF03602.10 183 9.7e-06 18.7 0.0 1 2 0.00026 0.045 6.8 0.0 112 146 18 54 5 82 0.66 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_69 - 228 Cons_hypoth95 PF03602.10 183 9.7e-06 18.7 0.0 2 2 2.6e-05 0.0044 10.1 0.0 41 62 162 183 145 216 0.85 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 4_13 - 1045 AAA_19 PF13245.1 76 6.9e-07 22.7 0.4 1 1 6.6e-08 2.8e-06 20.7 0.4 7 71 269 330 262 336 0.71 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 3_11 - 319 AAA_19 PF13245.1 76 0.0001 15.7 0.4 1 1 6.9e-06 0.0003 14.2 0.0 9 36 113 140 106 152 0.84 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 3_9 - 535 AAA_19 PF13245.1 76 0.00033 14.1 0.0 1 1 2e-05 0.00087 12.7 0.0 14 39 257 282 250 290 0.81 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_82 - 742 AAA_19 PF13245.1 76 0.00087 12.7 0.0 1 1 5.1e-05 0.0022 11.5 0.0 10 50 46 85 38 86 0.82 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_28 - 877 AAA_10 PF12846.2 304 9.5e-50 163.3 0.1 1 1 4.8e-51 1.7e-49 162.5 0.1 1 299 480 774 480 777 0.90 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_3 - 730 AAA_10 PF12846.2 304 2.4e-10 33.9 0.0 1 1 1.4e-10 4.9e-09 29.6 0.0 3 296 187 494 186 499 0.69 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 3_9 - 535 AAA_10 PF12846.2 304 2.6e-05 17.4 0.0 1 1 1.3e-06 4.4e-05 16.7 0.0 5 40 257 295 254 335 0.74 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_35 - 107 AAA_10 PF12846.2 304 0.00039 13.6 0.0 1 2 0.017 0.59 3.1 0.0 273 289 25 41 11 54 0.80 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_35 - 107 AAA_10 PF12846.2 304 0.00039 13.6 0.0 2 2 0.00035 0.012 8.7 0.0 2 24 73 95 72 100 0.87 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_11 - 319 AAA_10 PF12846.2 304 0.0004 13.5 0.0 1 1 1.5e-05 0.0005 13.2 0.0 3 37 116 152 114 230 0.80 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 1_58 - 188 Methyltransf_31 PF13847.1 152 2.7e-06 20.7 0.0 1 1 1.9e-08 3.3e-06 20.4 0.0 5 118 52 156 48 182 0.85 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 4_13 - 1045 Viral_helicase1 PF01443.13 234 0.00043 13.5 0.0 1 2 0.00016 0.027 7.6 0.0 1 23 276 300 276 478 0.78 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 4_13 - 1045 Viral_helicase1 PF01443.13 234 0.00043 13.5 0.0 2 2 0.0026 0.45 3.6 0.0 173 234 674 735 622 735 0.63 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 3_9 - 535 Adeno_IVa2 PF02456.10 370 5.6e-05 15.5 0.0 1 1 5.1e-07 8.7e-05 14.9 0.0 48 114 210 280 171 291 0.72 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 1_3 - 730 TrwB_AAD_bind PF10412.4 386 1.2e-149 491.8 0.0 1 1 3.4e-151 1.4e-149 491.5 0.0 2 386 172 561 171 561 0.99 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_28 - 877 TrwB_AAD_bind PF10412.4 386 1.4e-06 20.7 0.3 1 1 9.5e-08 4.1e-06 19.2 0.0 15 53 480 518 471 548 0.80 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_35 - 107 TrwB_AAD_bind PF10412.4 386 0.00025 13.3 0.0 1 2 0.026 1.1 1.4 0.0 294 335 24 65 16 73 0.83 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_35 - 107 TrwB_AAD_bind PF10412.4 386 0.00025 13.3 0.0 2 2 2.3e-05 0.00099 11.4 0.0 6 42 63 99 58 103 0.87 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 3_11 - 319 TrwB_AAD_bind PF10412.4 386 0.00034 12.9 0.0 1 1 1.2e-05 0.00052 12.3 0.0 18 47 117 147 110 153 0.80 # 9752 # 10708 # 1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.413 4_13 - 1045 AAA_11 PF13086.1 236 8.5e-05 15.8 4.7 1 1 1.1e-06 0.00019 14.7 0.0 2 75 257 327 256 346 0.82 # 8073 # 11207 # -1 # ID=4_13;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;gc_cont=0.607 1_3 - 730 T4SS-DNA_transf PF02534.9 469 1.2e-09 30.9 0.0 1 1 4e-11 3.4e-09 29.4 0.0 264 361 382 476 198 500 0.83 # 2318 # 4507 # -1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.526 1_28 - 877 T4SS-DNA_transf PF02534.9 469 5.9e-06 18.7 0.0 1 2 0.00023 0.02 7.1 0.0 105 186 534 609 476 624 0.88 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_28 - 877 T4SS-DNA_transf PF02534.9 469 5.9e-06 18.7 0.0 2 2 4.7e-05 0.004 9.4 0.0 319 378 712 770 664 772 0.90 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_58 - 188 TIGR00755 TIGR00755 256 1.2e-08 27.9 0.0 1 1 9.1e-11 1.6e-08 27.5 0.0 8 105 29 123 25 134 0.91 # 42054 # 42617 # -1 # ID=1_58;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_69 - 228 MethyltransfD12 PF02086.10 260 0.00037 13.7 0.0 1 2 0.0079 1.4 2.0 0.0 175 189 18 32 9 94 0.79 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_69 - 228 MethyltransfD12 PF02086.10 260 0.00037 13.7 0.0 2 2 3.3e-05 0.0056 9.8 0.0 20 46 163 189 148 213 0.81 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_9 - 535 ArgK PF03308.11 267 0.0012 11.3 0.0 1 1 1.4e-05 0.0024 10.3 0.0 34 67 258 293 249 304 0.81 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 2_5 - 108 Ribosom_S12_S23 PF00164.20 122 0.00025 14.2 0.0 1 1 1.6e-06 0.00028 14.0 0.0 41 85 11 61 4 95 0.78 # 11497 # 11820 # -1 # ID=2_5;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.466 1_35 - 107 Pox_A32 PF04665.7 241 7.8e-05 15.7 0.0 1 2 0.023 2 1.3 0.1 2 30 41 68 40 71 0.77 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_35 - 107 Pox_A32 PF04665.7 241 7.8e-05 15.7 0.0 2 2 4.2e-06 0.00036 13.5 0.0 7 42 66 101 60 104 0.89 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_28 - 877 Pox_A32 PF04665.7 241 0.0011 11.9 0.0 1 1 3.7e-05 0.0031 10.4 0.0 6 38 473 505 470 520 0.85 # 21178 # 23808 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.531 1_35 - 107 RNA_helicase PF00910.17 107 0.00014 15.7 0.0 1 1 1.6e-06 0.00028 14.8 0.0 1 29 75 103 75 106 0.91 # 26197 # 26517 # -1 # ID=1_35;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.405 1_82 - 742 UPF0079 PF02367.12 123 0.00072 12.9 0.0 1 1 9.6e-06 0.0016 11.7 0.0 10 41 41 72 31 81 0.85 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_82 - 742 NACHT PF05729.7 166 1.3e-05 18.5 0.1 1 2 9e-06 0.0015 11.8 0.0 2 32 48 78 47 86 0.85 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_82 - 742 NACHT PF05729.7 166 1.3e-05 18.5 0.1 2 2 0.002 0.35 4.2 0.0 48 99 478 541 461 582 0.81 # 58496 # 60721 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.487 1_69 - 228 Methyltransf_15 PF09445.5 164 4.5e-05 16.7 0.1 1 2 0.0074 1.3 2.2 0.0 53 80 4 30 2 38 0.92 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 1_69 - 228 Methyltransf_15 PF09445.5 164 4.5e-05 16.7 0.1 2 2 6.3e-06 0.0011 12.2 0.0 3 38 166 202 164 212 0.82 # 48293 # 48976 # -1 # ID=1_69;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.570 3_9 - 535 AAA_5 PF07728.9 139 0.00056 13.3 0.0 1 2 2.5e-05 0.0043 10.5 0.0 3 40 257 297 256 352 0.71 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 3_9 - 535 AAA_5 PF07728.9 139 0.00056 13.3 0.0 2 2 0.045 7.7 -0.1 0.0 64 78 496 514 469 527 0.78 # 7061 # 8665 # 1 # ID=3_9;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.393 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/72465906-1383-4c82-a34e-335e092eb3a8 # Target file: checkm_output/bins/pm843/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm843/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/72465906-1383-4c82-a34e-335e092eb3a8 checkm_output/bins/pm843/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:19 2020 # [ok]