# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 3_2 - 188 Methyltransf_12 PF08242.7 99 6.1e-06 18.8 0.0 1 1 2e-07 1.1e-05 18.0 0.0 1 99 55 144 55 144 0.86 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_11 - 228 UPF0020 PF01170.13 180 3.8e-06 18.6 0.0 1 2 0.00016 0.0088 7.6 0.0 104 119 18 33 7 88 0.73 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 UPF0020 PF01170.13 180 3.8e-06 18.6 0.0 2 2 6.2e-05 0.0033 9.0 0.0 28 54 163 189 158 221 0.67 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_2 - 188 RrnaAD PF00398.15 262 1.9e-09 28.9 0.0 1 1 4.4e-11 2.4e-09 28.6 0.0 9 113 29 128 24 148 0.89 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 4_6 - 176 SSB PF00436.20 104 4.8e-41 130.9 0.3 1 1 1.1e-42 6.1e-41 130.6 0.3 1 101 6 109 6 112 0.95 # 4454 # 4981 # -1 # ID=4_6;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.583 3_2 - 188 Methyltransf_18 PF12847.2 112 1.6e-10 33.6 0.0 1 1 6.3e-12 3.4e-10 32.6 0.0 4 109 53 146 50 148 0.89 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_7 - 1757 UvrD_C_2 PF13538.1 104 7.1e-08 24.7 0.8 1 2 0.013 0.71 2.2 0.0 6 44 1227 1265 1223 1294 0.75 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 UvrD_C_2 PF13538.1 104 7.1e-08 24.7 0.8 2 2 4.1e-08 2.2e-06 19.8 0.2 3 102 1341 1444 1339 1446 0.77 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 2_16 - 85 Rad60-SLD PF11976.3 72 5.5e-05 14.9 0.1 1 1 1.5e-06 7.8e-05 14.4 0.1 12 39 39 66 31 75 0.83 # 13804 # 14058 # -1 # ID=2_16;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.416 3_11 - 228 N6_N4_Mtase PF01555.13 231 3.5e-37 120.1 0.0 1 2 1.3e-15 7e-14 43.8 0.0 1 114 21 124 21 133 0.89 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 N6_N4_Mtase PF01555.13 231 3.5e-37 120.1 0.0 2 2 5.4e-25 2.9e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_8 - 730 MobB PF03205.9 140 0.00051 11.8 0.0 1 1 2.1e-05 0.0011 10.7 0.0 7 34 192 219 188 225 0.89 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 730 AAA_16 PF13191.1 185 2.4e-05 16.4 0.0 1 1 2.1e-06 0.00011 14.2 0.0 21 57 182 219 179 264 0.81 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 3_2 - 188 Methyltransf_25 PF13649.1 101 6.1e-05 15.4 0.0 1 1 1.7e-06 9e-05 14.9 0.0 1 101 54 142 54 142 0.81 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 2_6 - 139 Ribosomal_S8 PF00410.14 129 0.00071 11.5 1.8 1 2 0.0059 0.32 2.9 0.1 41 73 2 29 1 35 0.56 # 3512 # 3928 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 2_6 - 139 Ribosomal_S8 PF00410.14 129 0.00071 11.5 1.8 2 2 0.00012 0.0066 8.4 0.1 50 87 90 128 50 135 0.79 # 3512 # 3928 # 1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.360 3_2 - 188 N6_Mtase PF02384.11 311 8.2e-05 13.8 0.0 1 2 1.6e-05 0.00088 10.4 0.0 28 64 32 68 21 83 0.87 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 188 N6_Mtase PF02384.11 311 8.2e-05 13.8 0.0 2 2 0.018 0.98 0.4 0.0 127 137 114 124 103 134 0.82 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_8 - 730 TraG-D_C PF12696.2 128 3.6e-20 64.2 0.0 1 1 1.4e-21 7.6e-20 63.1 0.0 1 127 419 541 419 542 0.86 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 3_2 - 188 Methyltransf_26 PF13659.1 117 1.4e-14 46.2 0.0 1 1 9e-16 2.4e-14 45.4 0.0 2 114 52 147 51 150 0.91 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_11 - 228 Methyltransf_26 PF13659.1 117 7.8e-13 40.6 0.1 1 2 7e-08 1.9e-06 20.0 0.0 54 114 4 71 2 74 0.73 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 Methyltransf_26 PF13659.1 117 7.8e-13 40.6 0.1 2 2 1.9e-07 5.2e-06 18.6 0.0 4 45 167 207 164 223 0.82 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_7 - 1757 AAA_30 PF13604.1 196 4e-43 139.3 15.6 1 3 0.047 2.6 -0.4 0.0 41 86 223 269 219 280 0.82 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 AAA_30 PF13604.1 196 4e-43 139.3 15.6 2 3 9.4e-06 0.00051 11.7 3.8 7 147 420 552 416 562 0.84 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 AAA_30 PF13604.1 196 4e-43 139.3 15.6 3 3 1.2e-42 6.5e-41 132.1 2.3 1 186 968 1156 968 1160 0.94 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 3_2 - 188 MTS PF05175.9 170 4.7e-10 31.1 0.0 1 1 1.2e-11 6.4e-10 30.7 0.0 31 141 50 149 41 166 0.84 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 188 Methyltrans_SAM PF10672.4 286 0.0005 11.0 0.0 1 1 1.3e-05 0.00071 10.5 0.0 196 261 113 173 100 180 0.78 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_2 - 188 Met_10 PF02475.11 200 0.00028 12.5 0.0 1 1 7e-06 0.00038 12.1 0.0 99 189 48 132 38 145 0.78 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_11 - 228 Cons_hypoth95 PF03602.10 183 5.6e-06 17.9 0.0 1 2 0.00032 0.017 6.5 0.0 113 146 19 54 5 81 0.66 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 Cons_hypoth95 PF03602.10 183 5.6e-06 17.9 0.0 2 2 4e-05 0.0022 9.4 0.0 41 62 162 183 145 218 0.78 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_7 - 1757 AAA_19 PF13245.1 76 4.2e-07 21.7 1.7 1 1 3.1e-08 1.7e-06 19.8 0.4 7 71 981 1042 974 1048 0.71 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 730 AAA_10 PF12846.2 304 3.1e-08 25.3 0.0 1 1 6.2e-09 3.4e-07 22.0 0.0 3 296 187 494 186 500 0.67 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 3_2 - 188 Methyltransf_31 PF13847.1 152 3.3e-07 22.0 0.0 1 1 7.6e-09 4.1e-07 21.7 0.0 5 119 52 162 48 183 0.83 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00033 12.2 0.0 1 2 0.00032 0.017 6.6 0.0 1 23 988 1012 988 1162 0.77 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_7 - 1757 Viral_helicase1 PF01443.13 234 0.00033 12.2 0.0 2 2 0.005 0.27 2.7 0.0 174 234 1387 1447 1335 1447 0.63 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 730 TrwB_AAD_bind PF10412.4 386 5.7e-149 487.9 0.0 1 1 1.3e-150 7e-149 487.6 0.0 2 386 172 561 171 561 0.99 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_7 - 1757 AAA_11 PF13086.1 236 8.3e-05 14.2 3.3 1 1 2.1e-06 0.00011 13.8 0.0 2 75 969 1039 968 1058 0.82 # 4518 # 9788 # -1 # ID=1_7;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.602 1_8 - 730 T4SS-DNA_transf PF02534.9 469 1.5e-10 32.2 0.0 1 2 0.012 0.67 0.4 0.0 125 191 257 322 198 352 0.73 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 1_8 - 730 T4SS-DNA_transf PF02534.9 469 1.5e-10 32.2 0.0 2 2 2.2e-11 1.2e-09 29.2 0.0 264 366 382 481 359 500 0.78 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 3_2 - 188 TIGR00755 TIGR00755 256 1.4e-09 29.3 0.0 1 1 3.4e-11 1.8e-09 28.9 0.0 8 105 29 123 25 134 0.90 # 452 # 1015 # -1 # ID=3_2;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.585 3_11 - 228 MethyltransfD12 PF02086.10 260 0.0003 12.3 0.0 1 2 0.022 1.2 0.5 0.0 178 188 21 31 14 91 0.83 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 MethyltransfD12 PF02086.10 260 0.0003 12.3 0.0 2 2 4e-05 0.0022 9.5 0.0 20 46 163 189 148 197 0.78 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 Methyltransf_15 PF09445.5 164 0.00015 13.3 0.0 1 2 0.012 0.67 1.5 0.0 53 79 4 29 2 33 0.91 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 3_11 - 228 Methyltransf_15 PF09445.5 164 0.00015 13.3 0.0 2 2 4.2e-05 0.0023 9.5 0.0 3 31 166 194 164 209 0.86 # 6740 # 7423 # -1 # ID=3_11;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.576 1_8 - 730 AAA_28 PF13521.1 163 0.00022 13.3 0.0 1 1 1.1e-05 0.00057 11.9 0.0 2 37 188 228 187 252 0.78 # 9788 # 11977 # -1 # ID=1_8;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.526 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/1848b022-e320-4897-8593-e41f06a084a7 # Target file: checkm_output/bins/pm841/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm841/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/1848b022-e320-4897-8593-e41f06a084a7 checkm_output/bins/pm841/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:15 2020 # [ok]