# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 2_28 - 145 SSB PF00436.20 104 7.2e-32 102.3 0.2 1 1 8.4e-34 8.2e-32 102.1 0.2 2 103 7 111 6 112 0.96 # 25425 # 25859 # -1 # ID=2_28;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.483 3_5 - 248 Methyltransf_18 PF12847.2 112 1.8e-05 18.2 0.0 1 1 3.1e-07 3e-05 17.5 0.0 3 43 106 144 104 210 0.78 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_19 - 388 DUF87 PF01935.12 229 9.2e-05 15.2 0.0 1 1 1.8e-06 0.00018 14.2 0.0 28 45 157 174 155 188 0.89 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 AAA_22 PF13401.1 131 4.1e-06 19.8 0.0 1 1 1.9e-07 9.5e-06 18.7 0.0 4 30 152 178 149 243 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_6 - 1017 AAA_22 PF13401.1 131 0.00037 13.5 0.0 1 1 2.4e-05 0.0012 11.9 0.0 8 69 492 557 486 594 0.67 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_19 - 388 ATP_bind_1 PF03029.12 238 0.0008 11.8 0.0 1 1 1.3e-05 0.0013 11.2 0.0 1 25 157 181 157 191 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_6 - 1017 AAA_17 PF13207.1 121 4.4e-05 17.2 0.0 1 1 2.9e-06 0.00029 14.6 0.0 3 28 492 523 492 587 0.67 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_19 - 388 Miro PF08477.8 119 0.00093 12.6 0.0 1 1 2.1e-05 0.0021 11.5 0.0 4 28 157 186 156 220 0.72 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 MobB PF03205.9 140 0.00052 12.6 0.0 1 1 1e-05 0.001 11.7 0.0 4 25 156 177 154 190 0.85 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 T2SE PF00437.15 272 2.1e-23 75.4 0.0 1 1 3.4e-25 3.3e-23 74.8 0.0 11 269 24 303 15 306 0.78 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 SMC_N PF02463.14 220 0.001 11.2 0.0 1 1 1.8e-05 0.0017 10.4 0.0 25 50 153 178 146 195 0.81 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 AAA_16 PF13191.1 185 0.00063 12.6 0.0 1 1 1.2e-05 0.0012 11.7 0.0 25 50 153 178 141 211 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 AAA_23 PF13476.1 202 1.9e-06 21.2 0.5 1 1 4.3e-08 4.2e-06 20.0 0.2 19 44 152 177 136 195 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_6 - 1017 AAA_18 PF13238.1 129 5.4e-05 16.4 0.1 1 1 4.2e-06 0.00041 13.6 0.0 2 19 492 509 492 562 0.79 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_19 - 388 KaiC PF06745.8 227 0.00076 11.5 0.0 1 1 1.4e-05 0.0013 10.7 0.0 11 59 144 191 137 201 0.76 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 AAA_29 PF13555.1 62 8.3e-06 18.2 0.1 1 1 2e-07 2e-05 17.0 0.1 25 43 154 172 146 175 0.84 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 Ribosomal_S5 PF00333.15 67 3.1e-05 16.6 0.1 1 2 0.00093 0.091 5.5 0.0 26 45 84 103 77 114 0.83 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 Ribosomal_S5 PF00333.15 67 3.1e-05 16.6 0.1 2 2 0.00012 0.011 8.4 0.0 21 54 242 274 230 278 0.91 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 1_37 - 696 TraG-D_C PF12696.2 128 0.00013 14.7 0.1 1 1 2.4e-06 0.00023 13.9 0.1 3 94 437 524 435 556 0.78 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 3_5 - 248 FmrO PF07091.6 251 1.1e-81 266.3 0.0 1 1 1.3e-83 1.3e-81 266.1 0.0 1 251 10 243 10 243 0.98 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_19 - 388 FtsK_SpoIIIE PF01580.13 205 0.0001 14.7 0.0 1 1 2.1e-06 0.0002 13.7 0.0 41 59 155 173 135 184 0.85 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 ABC_tran PF00005.22 137 0.00011 15.4 0.0 1 1 2.2e-06 0.00021 14.5 0.0 15 33 156 174 147 217 0.82 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_6 - 1017 AAA_19 PF13245.1 76 0.00036 13.2 0.0 1 1 1.2e-05 0.0011 11.6 0.0 14 32 492 509 481 523 0.86 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_6 - 1017 AAA_10 PF12846.2 304 7.4e-42 136.6 0.0 1 1 4.6e-43 1.5e-41 135.6 0.0 5 297 492 884 489 889 0.94 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 1_37 - 696 AAA_10 PF12846.2 304 6.2e-10 31.8 0.0 1 1 2.8e-11 9.2e-10 31.2 0.0 2 292 134 503 133 514 0.76 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 2_19 - 388 AAA_10 PF12846.2 304 1.2e-06 21.0 0.0 1 1 2.1e-07 6.9e-06 18.5 0.0 2 27 153 178 152 196 0.74 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 3_5 - 248 Methyltransf_31 PF13847.1 152 0.00024 13.6 0.0 1 1 3.3e-06 0.00033 13.2 0.0 5 46 106 144 102 222 0.82 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_6 - 1017 DUF2075 PF09848.4 352 0.00036 12.4 0.0 1 1 1e-05 0.001 10.9 0.0 5 22 492 509 489 526 0.84 # 5282 # 8332 # -1 # ID=2_6;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.474 2_38 - 115 Methyltransf_27 PF13708.1 194 1.6e-31 102.2 0.0 1 1 1.8e-33 1.7e-31 102.1 0.0 86 194 1 110 1 110 0.97 # 29528 # 29872 # -1 # ID=2_38;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.533 1_37 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 1 3 1.7e-05 0.0017 9.8 0.0 16 36 134 154 125 158 0.88 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_37 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 2 3 9.3e-05 0.0091 7.4 0.1 93 140 235 281 229 303 0.80 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 1_37 - 696 TrwB_AAD_bind PF10412.4 386 1.8e-06 19.6 0.9 3 3 0.083 8.1 -2.3 0.0 293 323 482 512 405 546 0.58 # 21414 # 23501 # 1 # ID=1_37;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.547 3_5 - 248 Methyltransf_23 PF13489.1 161 9.5e-05 15.0 0.0 1 1 1.7e-06 0.00016 14.3 0.0 7 59 89 141 80 226 0.78 # 1554 # 2297 # -1 # ID=3_5;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.594 2_19 - 388 GTP_EFTU PF00009.22 188 0.0011 11.3 0.0 1 1 2e-05 0.0019 10.5 0.0 8 34 157 183 155 195 0.87 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 RNA_helicase PF00910.17 107 0.0011 12.1 0.0 1 1 2.5e-05 0.0024 10.9 0.0 3 26 157 180 156 197 0.81 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 NACHT PF05729.7 166 0.00033 13.2 0.0 1 1 6.6e-06 0.00065 12.3 0.0 4 29 156 181 154 188 0.83 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 2_19 - 388 AAA_25 PF13481.1 194 5.5e-06 18.8 0.0 1 1 1.1e-07 1.1e-05 17.8 0.0 25 53 144 172 122 178 0.89 # 18500 # 19663 # -1 # ID=2_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.514 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/ba530245-da87-47ca-911b-211fe5a3141d # Target file: checkm_output/bins/pm830/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm830/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/ba530245-da87-47ca-911b-211fe5a3141d checkm_output/bins/pm830/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:11 2020 # [ok]