# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_3 - 223 MipZ PF09140.6 261 3.1e-10 31.9 1.4 1 2 1e-05 0.00072 11.0 0.4 2 41 4 43 3 55 0.87 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 MipZ PF09140.6 261 3.1e-10 31.9 1.4 2 2 3e-08 2.1e-06 19.4 0.0 87 130 68 111 54 129 0.87 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 ATP_bind_1 PF03029.12 238 0.00016 13.6 0.2 1 1 4.4e-05 0.003 9.4 0.2 6 42 13 49 10 115 0.91 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 SRP54 PF00448.17 196 0.00034 12.5 0.1 1 1 1.3e-05 0.0009 11.1 0.1 10 98 12 94 3 111 0.76 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_26 - 257 Adenylsucc_synt PF00709.16 421 0.001 10.1 4.0 1 2 2.1e-05 0.0015 9.6 0.2 159 229 51 122 29 126 0.76 # 16925 # 17695 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_26 - 257 Adenylsucc_synt PF00709.16 421 0.001 10.1 4.0 2 2 0.0051 0.35 1.7 0.5 142 180 194 233 148 254 0.65 # 16925 # 17695 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_3 - 223 MobB PF03205.9 140 6.3e-06 18.3 0.6 1 2 9e-06 0.00062 11.9 0.2 2 38 4 41 3 54 0.85 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 MobB PF03205.9 140 6.3e-06 18.3 0.6 2 2 0.0016 0.11 4.6 0.0 44 75 85 119 72 133 0.81 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 ArsA_ATPase PF02374.10 305 4.3e-08 24.9 0.1 1 1 1.2e-09 8.1e-08 23.9 0.1 4 38 6 40 3 53 0.92 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_32 - 344 T2SE PF00437.15 272 3.6e-45 146.3 0.0 1 1 6.5e-47 4.5e-45 146.0 0.0 11 246 24 285 16 316 0.88 # 22098 # 23129 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_32 - 344 Zeta_toxin PF06414.7 201 0.00029 12.3 0.0 1 1 8.3e-06 0.00057 11.4 0.0 17 59 165 208 153 234 0.76 # 22098 # 23129 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_3 - 223 VirC1 PF07015.6 231 3.1e-08 25.3 0.0 1 1 8.3e-10 5.8e-08 24.4 0.0 3 55 4 56 2 61 0.92 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 Fer4_NifH PF00142.13 273 1.7e-06 19.7 0.3 1 1 5.6e-08 3.8e-06 18.6 0.1 6 41 9 44 5 53 0.90 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_26 - 257 AAA_13 PF13166.1 712 1.9e-05 15.6 5.1 1 2 1.1e-06 7.3e-05 13.7 0.0 315 409 28 122 6 143 0.90 # 16925 # 17695 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_26 - 257 AAA_13 PF13166.1 712 1.9e-05 15.6 5.1 2 2 0.0051 0.35 1.5 3.8 98 177 161 225 145 252 0.37 # 16925 # 17695 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.493 1_3 - 223 CbiA PF01656.18 195 1.6e-15 49.4 0.5 1 1 4.7e-17 3.3e-15 48.4 0.5 2 167 6 155 5 181 0.72 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_11 - 172 B5 PF03484.10 70 7.7e-05 14.9 0.0 1 2 0.032 2.2 0.6 0.0 12 38 7 35 1 50 0.76 # 7226 # 7741 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_11 - 172 B5 PF03484.10 70 7.7e-05 14.9 0.0 2 2 1e-05 0.0007 11.9 0.0 16 59 91 144 77 155 0.67 # 7226 # 7741 # 1 # ID=1_11;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.419 1_34 - 612 TraG-D_C PF12696.2 128 7e-29 92.7 0.0 1 1 1.7e-30 1.2e-28 92.0 0.0 2 127 416 534 415 535 0.86 # 23319 # 25154 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_31 - 401 DLIC PF05783.6 472 0.0082 7.1 5.7 1 1 0.0002 0.014 6.3 5.7 353 458 90 201 78 208 0.69 # 20884 # 22086 # 1 # ID=1_31;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.490 1_3 - 223 AAA_31 PF13614.1 157 4.3e-07 22.4 0.0 1 2 6.7e-07 4.6e-05 15.8 0.0 1 42 3 44 3 57 0.90 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 AAA_31 PF13614.1 157 4.3e-07 22.4 0.0 2 2 0.0021 0.15 4.4 0.0 111 151 73 112 63 115 0.83 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_2 - 323 RuvB_N PF05496.7 234 0.00045 11.6 0.0 1 1 1.4e-05 0.00096 10.6 0.0 78 119 46 86 40 100 0.89 # 429 # 1397 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.508 1_25 - 918 AAA_10 PF12846.2 304 3.6e-35 114.2 0.0 1 1 3.5e-36 1.2e-34 112.4 0.0 3 295 539 826 538 833 0.93 # 14161 # 16914 # 1 # ID=1_25;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.464 1_50 - 93 AAA_10 PF12846.2 304 3.9e-05 15.5 0.0 1 1 1.4e-06 4.9e-05 15.2 0.0 241 267 6 32 2 51 0.90 # 34233 # 34511 # 1 # ID=1_50;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.498 1_32 - 344 DEAD PF00270.24 169 0.0004 12.3 0.0 1 1 1e-05 0.00072 11.5 0.0 8 39 156 187 152 240 0.78 # 22098 # 23129 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 1_34 - 612 TrwB_AAD_bind PF10412.4 386 8.8e-23 72.8 0.0 1 1 2e-24 1.4e-22 72.2 0.0 165 380 331 548 300 552 0.86 # 23319 # 25154 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_34 - 612 T4SS-DNA_transf PF02534.9 469 1.5e-147 484.3 0.0 1 1 2.6e-149 1.8e-147 484.0 0.0 2 462 102 572 101 580 0.98 # 23319 # 25154 # 1 # ID=1_34;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.441 1_3 - 223 ArgK PF03308.11 267 0.00032 11.9 0.1 1 2 1.3e-05 0.00091 10.4 0.1 37 67 11 41 3 47 0.88 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 ArgK PF03308.11 267 0.00032 11.9 0.1 2 2 0.069 4.8 -1.8 0.0 154 174 88 107 61 144 0.55 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_3 - 223 GTP_EFTU PF00009.22 188 1e-07 23.9 0.1 1 1 1.7e-09 1.2e-07 23.8 0.1 15 141 15 155 6 213 0.72 # 1779 # 2447 # 1 # ID=1_3;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.478 1_21 - 170 TIGR00922 TIGR00922 172 4.1e-08 25.3 0.0 1 1 1.3e-09 8.8e-08 24.2 0.0 55 110 51 106 28 144 0.84 # 12485 # 12994 # 1 # ID=1_21;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.425 1_32 - 344 AAA_25 PF13481.1 194 9.5e-05 14.2 0.0 1 1 2e-06 0.00014 13.7 0.0 15 52 145 182 131 225 0.84 # 22098 # 23129 # 1 # ID=1_32;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.420 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/3b8398fe-8b59-429a-8119-3909f6b0ca71 # Target file: checkm_output/bins/pm825/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm825/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/3b8398fe-8b59-429a-8119-3909f6b0ca71 checkm_output/bins/pm825/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:06 2020 # [ok]