# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_29 - 354 Mg_chelatase PF01078.16 207 0.00034 12.0 0.0 1 1 8.8e-06 0.00052 11.3 0.0 24 59 179 214 171 257 0.76 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 IstB_IS21 PF01695.12 178 2.9e-06 18.9 0.0 1 1 8.4e-08 4.9e-06 18.2 0.0 41 69 17 45 2 54 0.83 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 Septin PF00735.13 281 0.00055 11.1 0.0 1 2 0.061 3.6 -1.4 0.0 234 254 2 22 1 26 0.87 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 Septin PF00735.13 281 0.00055 11.1 0.0 2 2 2.9e-05 0.0017 9.5 0.0 4 25 177 198 174 225 0.82 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_22 PF13401.1 131 0.00012 14.4 0.0 1 1 4.4e-06 0.00026 13.3 0.0 8 44 181 211 177 244 0.83 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 ATP_bind_1 PF03029.12 238 4.8e-05 15.1 0.0 1 1 1.3e-06 7.5e-05 14.5 0.0 2 25 183 206 182 211 0.86 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 SRP54 PF00448.17 196 0.00022 12.9 0.0 1 1 6e-06 0.00036 12.2 0.0 4 29 180 205 177 211 0.84 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_17 PF13207.1 121 6e-05 16.1 0.0 1 1 3.9e-06 0.00012 15.1 0.0 4 32 182 212 180 264 0.76 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 AAA_17 PF13207.1 121 0.0004 13.4 0.0 1 1 2.9e-05 0.00086 12.3 0.0 2 28 26 53 25 144 0.60 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 AAA_21 PF13304.1 303 1.5e-05 17.2 0.0 1 1 5.4e-07 3.2e-05 16.1 0.0 3 40 181 217 180 246 0.73 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 MobB PF03205.9 140 4.8e-05 15.3 0.0 1 1 1.4e-06 8.5e-05 14.5 0.0 5 39 182 215 179 221 0.81 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 T2SE PF00437.15 272 4e-54 175.4 0.0 1 1 1.7e-55 5e-54 175.1 0.0 5 265 20 323 16 328 0.93 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_31 - 45 T2SE PF00437.15 272 6.1e-05 14.1 0.1 1 1 2.1e-06 6.2e-05 14.1 0.1 134 171 7 43 2 44 0.78 # 19559 # 19693 # -1 # ID=1_31;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.319 1_29 - 354 Zeta_toxin PF06414.7 201 0.00023 12.4 0.0 1 1 6.1e-06 0.00036 11.8 0.0 14 49 175 211 163 216 0.84 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_23 PF13476.1 202 0.00045 12.7 0.0 1 1 1.4e-05 0.00083 11.8 0.0 24 40 182 198 168 232 0.92 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 AAA_18 PF13238.1 129 0.0001 14.8 0.0 1 2 9.7e-06 0.00057 12.4 0.0 2 93 27 123 26 142 0.62 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_56 - 269 AAA_18 PF13238.1 129 0.0001 14.8 0.0 2 2 0.065 3.8 0.0 0.0 70 91 204 225 158 262 0.76 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_56 - 269 CbiA PF01656.18 195 1e-06 20.4 0.0 1 1 2.5e-08 1.5e-06 19.9 0.0 2 116 26 124 25 176 0.82 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 AAA_14 PF13173.1 128 9e-05 14.6 0.0 1 1 5.2e-06 0.00015 13.8 0.0 6 47 181 220 177 284 0.73 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 AAA_14 PF13173.1 128 0.00024 13.2 0.4 1 1 1.9e-05 0.00055 12.0 0.0 4 85 25 100 22 128 0.56 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 AAA_29 PF13555.1 62 1e-05 17.2 0.1 1 1 5.7e-07 3.3e-05 15.6 0.0 17 51 174 205 167 213 0.76 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_56 - 269 Sigma54_activat PF00158.21 168 3.1e-05 15.6 0.0 1 1 9.7e-07 5.7e-05 14.8 0.0 12 44 13 45 4 77 0.82 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_28 - 674 TraG-D_C PF12696.2 128 1.1e-29 95.1 0.1 1 1 3.3e-31 1.9e-29 94.3 0.1 2 126 468 589 467 591 0.88 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_29 - 354 AAA_33 PF13671.1 143 2.8e-05 16.2 0.0 1 1 7.6e-07 4.5e-05 15.5 0.0 3 21 181 199 180 266 0.83 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_30 PF13604.1 196 0.00021 13.1 0.0 1 1 6e-06 0.00035 12.3 0.0 21 46 180 205 170 212 0.83 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 FtsK_SpoIIIE PF01580.13 205 0.00012 13.7 0.0 1 1 4.6e-06 0.00027 12.6 0.0 39 58 177 197 158 199 0.79 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 ABC_tran PF00005.22 137 4.9e-06 19.1 0.0 1 1 1.7e-07 9.8e-06 18.1 0.0 14 60 180 224 171 297 0.82 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_36 - 842 AAA_10 PF12846.2 304 7e-24 76.9 0.0 1 1 3.4e-25 1e-23 76.4 0.0 1 291 427 727 427 734 0.82 # 23424 # 25949 # -1 # ID=1_36;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-10bp;gc_cont=0.405 1_29 - 354 AAA_10 PF12846.2 304 2.1e-05 16.2 0.0 1 1 1.3e-06 3.9e-05 15.3 0.0 4 34 180 210 178 215 0.87 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_28 - 674 TrwB_AAD_bind PF10412.4 386 1.9e-18 58.3 0.0 1 2 0.00017 0.0051 7.5 0.0 75 130 248 307 242 322 0.75 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_28 - 674 TrwB_AAD_bind PF10412.4 386 1.9e-18 58.3 0.0 2 2 5.4e-17 1.6e-15 48.7 0.0 167 374 385 598 377 610 0.77 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_29 - 354 TrwB_AAD_bind PF10412.4 386 0.00042 11.1 0.0 1 1 2.3e-05 0.00068 10.4 0.0 17 44 179 206 170 214 0.77 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_28 - 674 T4SS-DNA_transf PF02534.9 469 3.1e-96 314.8 1.3 1 2 1.7e-28 5.1e-27 86.6 0.0 4 103 109 207 106 220 0.94 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_28 - 674 T4SS-DNA_transf PF02534.9 469 3.1e-96 314.8 1.3 2 2 8.5e-71 2.5e-69 226.1 1.3 104 459 242 641 232 649 0.87 # 16192 # 18213 # -1 # ID=1_28;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.388 1_30 - 61 T4SS-DNA_transf PF02534.9 469 2.2e-06 18.6 0.0 1 1 8.6e-08 2.5e-06 18.4 0.0 58 84 10 36 8 46 0.94 # 19308 # 19490 # -1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-10bp;gc_cont=0.339 1_29 - 354 Pox_A32 PF04665.7 241 3.4e-06 18.6 0.0 1 1 8.9e-08 5.2e-06 18.0 0.0 4 67 169 228 166 243 0.74 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_1 - 1041 Plug PF07715.10 108 0.0002 13.9 0.2 1 3 0.033 1.9 1.1 0.0 41 90 230 275 211 280 0.83 # 3 # 3125 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 1_1 - 1041 Plug PF07715.10 108 0.0002 13.9 0.2 2 3 0.00038 0.023 7.3 0.0 15 86 715 791 699 794 0.73 # 3 # 3125 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 1_1 - 1041 Plug PF07715.10 108 0.0002 13.9 0.2 3 3 0.046 2.7 0.6 0.0 55 86 846 881 814 902 0.62 # 3 # 3125 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.420 1_56 - 269 RNA_helicase PF00910.17 107 0.00031 13.1 0.1 1 1 1.4e-05 0.0008 11.8 0.1 1 26 26 51 26 121 0.70 # 37401 # 38207 # -1 # ID=1_56;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.392 1_29 - 354 NACHT PF05729.7 166 4.2e-05 15.4 0.0 1 1 1.6e-06 9.6e-05 14.2 0.0 4 23 181 200 179 207 0.88 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 1_29 - 354 AAA_5 PF07728.9 139 4.5e-05 15.4 0.0 1 1 1.4e-06 8.4e-05 14.5 0.0 3 33 181 211 179 218 0.87 # 18237 # 19298 # -1 # ID=1_29;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.397 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/37db06bf-7935-4c6d-9447-1ac5b79def71 # Target file: checkm_output/bins/pm824/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm824/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/37db06bf-7935-4c6d-9447-1ac5b79def71 checkm_output/bins/pm824/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:05 2020 # [ok]