# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_1 - 567 Seryl_tRNA_N PF02403.17 108 0.00067 11.9 8.8 1 3 0.0042 0.26 3.6 0.1 39 104 268 334 247 338 0.90 # 2 # 1702 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_1 - 567 Seryl_tRNA_N PF02403.17 108 0.00067 11.9 8.8 2 3 0.0013 0.082 5.2 0.1 27 59 365 397 353 418 0.85 # 2 # 1702 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_1 - 567 Seryl_tRNA_N PF02403.17 108 0.00067 11.9 8.8 3 3 0.00096 0.06 5.7 1.7 17 107 437 526 431 527 0.75 # 2 # 1702 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_13 - 402 MipZ PF09140.6 261 1.2e-06 20.0 0.0 1 2 0.0027 0.17 3.1 0.0 3 50 111 163 109 193 0.73 # 10419 # 11624 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 1_13 - 402 MipZ PF09140.6 261 1.2e-06 20.0 0.0 2 2 8.7e-07 5.4e-05 14.6 0.0 87 136 233 282 220 296 0.87 # 10419 # 11624 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_14 - 152 T2SE PF00437.15 272 4.9e-06 17.8 0.0 1 1 9.8e-08 6e-06 17.5 0.0 114 222 22 143 5 149 0.82 # 11049 # 11504 # 1 # ID=2_14;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.443 1_1 - 567 AAA_13 PF13166.1 712 0.0021 8.7 17.5 1 2 2.5e-05 0.0015 9.1 2.7 365 467 292 396 243 409 0.52 # 2 # 1702 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_1 - 567 AAA_13 PF13166.1 712 0.0021 8.7 17.5 2 2 0.00043 0.027 5.1 7.0 322 439 433 560 428 566 0.74 # 2 # 1702 # 1 # ID=1_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.481 1_13 - 402 CbiA PF01656.18 195 9.4e-19 59.8 0.0 1 1 2.8e-20 1.7e-18 58.9 0.0 1 142 111 292 111 327 0.76 # 10419 # 11624 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 2_9 - 129 Ribosomal_S20p PF01649.13 84 0.00017 14.2 0.1 1 1 4.8e-06 0.0003 13.4 0.1 6 59 56 109 53 118 0.75 # 7952 # 8338 # 1 # ID=2_9;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-10bp;gc_cont=0.444 1_13 - 402 AAA_31 PF13614.1 157 5.9e-05 15.3 0.0 1 1 5.5e-06 0.00034 12.8 0.0 108 147 235 273 230 279 0.86 # 10419 # 11624 # 1 # ID=1_13;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.457 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/2d85e79d-a082-440c-8d3d-5ba63bb0cb46 # Target file: checkm_output/bins/pm823/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm823/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/2d85e79d-a082-440c-8d3d-5ba63bb0cb46 checkm_output/bins/pm823/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:05 2020 # [ok]