# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- 1_41 - 188 Methyltransf_12 PF08242.7 99 2.9e-05 17.9 0.0 1 1 3.7e-07 5.1e-05 17.1 0.0 1 99 55 144 55 144 0.84 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_30 - 228 UPF0020 PF01170.13 180 1.8e-05 17.7 0.0 1 2 0.00029 0.04 6.8 0.0 103 119 17 33 4 88 0.73 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 228 UPF0020 PF01170.13 180 1.8e-05 17.7 0.0 2 2 6.2e-05 0.0084 9.0 0.0 28 54 163 189 158 221 0.67 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_19 - 742 cobW PF02492.14 178 0.00063 12.6 0.1 1 1 7.7e-06 0.0011 11.8 0.1 2 23 48 71 47 82 0.78 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_41 - 188 RrnaAD PF00398.15 262 6.6e-08 25.2 0.0 1 1 6e-10 8.3e-08 24.9 0.0 9 113 29 128 24 148 0.87 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_82 - 249 IstB_IS21 PF01695.12 178 1e-61 200.8 0.0 1 1 9.2e-64 1.3e-61 200.5 0.0 2 176 53 227 52 229 0.98 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_26 - 389 MipZ PF09140.6 261 5.9e-06 18.8 0.4 1 2 3.5e-06 0.00048 12.6 0.0 2 47 108 153 107 157 0.87 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_26 - 389 MipZ PF09140.6 261 5.9e-06 18.8 0.4 2 2 0.0011 0.15 4.4 0.0 88 134 224 270 197 292 0.84 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_44 - 151 SSB PF00436.20 104 1.4e-27 89.0 0.6 1 1 1.3e-29 1.8e-27 88.7 0.6 26 101 2 80 1 83 0.93 # 39665 # 40117 # 1 # ID=1_44;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=3-4bp;gc_cont=0.600 1_41 - 188 Methyltransf_18 PF12847.2 112 2.2e-10 34.5 0.0 1 1 3.4e-12 4.6e-10 33.5 0.0 4 109 53 146 50 148 0.88 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_77 - 1757 UvrD_C_2 PF13538.1 104 1.6e-07 24.8 0.7 1 2 0.013 1.8 2.2 0.0 6 44 1227 1265 1223 1295 0.74 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_77 - 1757 UvrD_C_2 PF13538.1 104 1.6e-07 24.8 0.7 2 2 4.2e-08 5.8e-06 19.8 0.2 3 102 1341 1444 1339 1446 0.77 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_19 - 742 NB-ARC PF00931.17 287 0.0018 10.4 0.9 1 1 6.6e-05 0.0091 8.2 0.9 17 110 44 205 30 219 0.72 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_82 - 249 AAA_22 PF13401.1 131 0.00011 15.7 0.2 1 1 2.4e-06 0.00033 14.1 0.2 5 49 99 138 95 183 0.80 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 SRP54 PF00448.17 196 0.00031 13.6 0.1 1 2 2.8e-05 0.0038 10.0 0.1 3 33 100 130 98 136 0.92 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 SRP54 PF00448.17 196 0.00031 13.6 0.1 2 2 0.013 1.8 1.3 0.0 82 124 158 200 151 218 0.87 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_19 - 742 KAP_NTPase PF07693.9 325 1.9e-72 237.3 0.0 1 1 2.1e-74 2.8e-72 236.7 0.0 1 325 27 334 27 334 0.96 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_30 - 228 N6_N4_Mtase PF01555.13 231 8.6e-37 120.1 0.0 1 2 1.2e-15 1.6e-13 44.0 0.0 1 114 21 124 21 137 0.89 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 228 N6_N4_Mtase PF01555.13 231 8.6e-37 120.1 0.0 2 2 5.4e-25 7.4e-23 74.5 0.0 169 228 141 200 126 203 0.90 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_82 - 249 AAA_17 PF13207.1 121 2.7e-06 21.6 0.5 1 1 1.3e-07 5.8e-06 20.5 0.1 2 64 101 173 100 231 0.62 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_76 - 733 AAA_17 PF13207.1 121 0.00044 14.4 0.0 1 1 3e-05 0.0014 12.9 0.0 3 27 189 217 187 284 0.70 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_19 - 742 AAA_17 PF13207.1 121 0.0014 12.8 0.1 1 1 0.0001 0.0046 11.1 0.1 1 43 48 94 48 284 0.87 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_82 - 249 MobB PF03205.9 140 0.00063 12.8 0.0 1 1 2.1e-05 0.0014 11.7 0.0 3 34 101 132 99 141 0.92 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_76 - 733 MobB PF03205.9 140 0.0015 11.6 0.0 1 1 5.2e-05 0.0036 10.4 0.0 7 34 192 219 188 225 0.89 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_59 - 120 CTP_transf_2 PF01467.21 157 0.0014 12.0 0.0 1 1 1.2e-05 0.0016 11.9 0.0 32 64 7 38 2 93 0.70 # 50448 # 50807 # 1 # ID=1_59;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.506 1_26 - 389 ArsA_ATPase PF02374.10 305 2.4e-06 20.1 0.4 1 2 1.7e-06 0.00023 13.6 0.1 9 36 115 142 109 151 0.89 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_26 - 389 ArsA_ATPase PF02374.10 305 2.4e-06 20.1 0.4 2 2 0.0011 0.15 4.3 0.0 123 136 231 244 221 251 0.84 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_82 - 249 PhoH PF02562.11 205 1e-05 18.2 0.1 1 2 2.7e-07 3.7e-05 16.3 0.0 19 47 98 126 87 136 0.86 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 PhoH PF02562.11 205 1e-05 18.2 0.1 2 2 0.064 8.8 -1.2 0.0 138 177 152 190 143 199 0.69 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 T2SE PF00437.15 272 3.9e-06 19.2 0.0 1 1 4.3e-08 6e-06 18.6 0.0 99 148 67 118 29 126 0.81 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 AAA_26 PF13500.1 199 0.00063 12.7 0.0 1 1 6.6e-06 0.0009 12.2 0.0 5 60 103 160 99 200 0.71 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_76 - 733 Zeta_toxin PF06414.7 201 0.0011 11.4 0.0 1 1 3.5e-05 0.0048 9.3 0.0 21 49 190 219 182 236 0.85 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_26 - 389 VirC1 PF07015.6 231 9e-05 14.9 0.1 1 2 0.00028 0.038 6.3 0.0 4 42 109 147 107 154 0.91 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_26 - 389 VirC1 PF07015.6 231 9e-05 14.9 0.1 2 2 0.0003 0.041 6.2 0.1 84 139 235 290 222 312 0.77 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_19 - 742 Arch_ATPase PF01637.13 234 0.00074 12.6 0.1 1 1 5.9e-05 0.0081 9.2 0.1 20 51 46 80 38 235 0.75 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_76 - 733 AAA_16 PF13191.1 185 5.2e-06 19.9 0.0 1 1 6e-07 2.7e-05 17.5 0.0 21 60 182 222 179 263 0.81 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_82 - 249 AAA_16 PF13191.1 185 7.3e-06 19.4 0.3 1 1 5.5e-07 2.5e-05 17.7 0.1 25 52 99 132 76 164 0.74 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_19 - 742 AAA_16 PF13191.1 185 2.7e-05 17.5 3.0 1 1 4.4e-06 0.0002 14.7 1.1 24 175 46 225 36 233 0.49 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_82 - 249 AAA_18 PF13238.1 129 0.00017 15.3 0.1 1 1 3e-06 0.00041 14.0 0.0 1 45 101 147 101 205 0.72 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_26 - 389 CbiA PF01656.18 195 1.4e-36 119.1 0.0 1 1 2.7e-38 1.8e-36 118.7 0.0 2 194 110 339 109 340 0.80 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_82 - 249 CbiA PF01656.18 195 0.0001 15.1 0.1 1 1 2.9e-06 0.0002 14.2 0.1 5 30 104 129 101 136 0.91 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 KaiC PF06745.8 227 0.00015 14.3 0.0 1 1 1.9e-06 0.00026 13.5 0.0 17 53 96 131 79 167 0.83 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 AAA_14 PF13173.1 128 0.00015 15.0 0.0 1 1 1.8e-06 0.00025 14.3 0.0 3 72 99 170 97 240 0.74 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 AAA_29 PF13555.1 62 0.00014 14.7 0.2 1 2 4.7e-06 0.00065 12.6 0.1 22 37 98 112 88 118 0.80 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 AAA_29 PF13555.1 62 0.00014 14.7 0.2 2 2 0.095 13 -1.2 0.0 35 43 210 218 198 229 0.62 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 AAA PF00004.24 132 5.4e-06 20.0 0.0 1 1 5.6e-08 7.6e-06 19.5 0.0 1 66 101 167 101 227 0.86 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 Bac_DnaA PF00308.13 219 4.7e-07 23.0 0.0 1 1 5.2e-09 7.1e-07 22.4 0.0 37 136 101 198 83 204 0.88 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 Sigma54_activat PF00158.21 168 0.00015 14.6 0.0 1 1 1.9e-06 0.00026 13.8 0.0 20 52 96 128 82 185 0.82 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 188 N6_Mtase PF02384.11 311 0.00039 12.9 0.0 1 2 3.4e-05 0.0046 9.3 0.0 28 62 32 66 21 75 0.89 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_41 - 188 N6_Mtase PF02384.11 311 0.00039 12.9 0.0 2 2 0.018 2.4 0.4 0.0 128 137 115 124 106 133 0.84 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_76 - 733 TraG-D_C PF12696.2 128 1.1e-20 67.2 0.0 1 1 1.4e-22 1.9e-20 66.4 0.0 1 127 419 541 419 542 0.86 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_26 - 389 AAA_31 PF13614.1 157 1.3e-09 31.5 0.0 1 2 1.4e-08 1.9e-06 21.3 0.0 2 49 108 155 107 195 0.91 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 1_26 - 389 AAA_31 PF13614.1 157 1.3e-09 31.5 0.0 2 2 0.00018 0.025 7.9 0.1 110 152 227 268 223 272 0.84 # 23422 # 24588 # 1 # ID=1_26;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-10bp;gc_cont=0.471 6_6 - 191 AAA_33 PF13671.1 143 1.2e-05 18.6 0.0 1 1 1.2e-07 1.6e-05 18.2 0.0 19 127 24 140 20 161 0.70 # 3619 # 4191 # -1 # ID=6_6;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;gc_cont=0.551 1_41 - 188 Methyltransf_26 PF13659.1 117 6.8e-14 45.3 0.1 1 1 1.8e-15 1.2e-13 44.5 0.1 2 114 52 147 51 150 0.90 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_30 - 228 Methyltransf_26 PF13659.1 117 1.2e-11 38.1 0.0 1 2 4.1e-07 2.8e-05 17.5 0.0 57 114 7 71 2 74 0.69 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 228 Methyltransf_26 PF13659.1 117 1.2e-11 38.1 0.0 2 2 1.9e-07 1.3e-05 18.6 0.0 4 45 167 207 164 223 0.82 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_77 - 1757 AAA_30 PF13604.1 196 2.4e-44 144.6 13.9 1 3 0.083 5.7 -0.2 0.0 41 86 223 269 219 281 0.81 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_77 - 1757 AAA_30 PF13604.1 196 2.4e-44 144.6 13.9 2 3 1.6e-05 0.0011 11.9 2.7 7 147 420 552 416 562 0.84 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_77 - 1757 AAA_30 PF13604.1 196 2.4e-44 144.6 13.9 3 3 9.9e-44 6.8e-42 136.6 1.9 1 186 968 1156 968 1162 0.94 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_76 - 733 AAA_30 PF13604.1 196 0.00083 12.3 0.0 1 1 2.6e-05 0.0018 11.2 0.0 21 57 188 224 180 230 0.85 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_41 - 188 MTS PF05175.9 170 3.1e-09 29.8 0.0 1 1 3.1e-11 4.3e-09 29.3 0.0 24 141 45 149 41 166 0.85 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_41 - 188 Methyltrans_SAM PF10672.4 286 0.0014 10.8 0.0 1 1 1.5e-05 0.0021 10.3 0.0 197 261 114 173 105 180 0.78 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_41 - 188 Met_10 PF02475.11 200 0.00025 14.0 0.0 1 1 2.5e-06 0.00034 13.6 0.0 94 189 43 132 29 145 0.81 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_19 - 742 ABC_tran PF00005.22 137 2.7e-05 17.8 0.0 1 1 7.5e-07 0.0001 16.0 0.0 5 36 40 71 37 88 0.89 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_30 - 228 Cons_hypoth95 PF03602.10 183 1.8e-05 17.5 0.0 1 2 0.00041 0.056 6.1 0.0 112 146 18 54 8 81 0.66 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 228 Cons_hypoth95 PF03602.10 183 1.8e-05 17.5 0.0 2 2 4e-05 0.0055 9.4 0.0 41 62 162 183 145 218 0.78 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_77 - 1757 AAA_19 PF13245.1 76 2.3e-07 23.9 2.0 1 1 1.7e-08 7.7e-07 22.2 0.5 7 76 981 1047 974 1047 0.74 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_82 - 249 AAA_19 PF13245.1 76 0.00022 14.4 0.0 1 1 1.1e-05 0.00048 13.2 0.0 8 33 98 120 84 137 0.78 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_19 - 742 AAA_19 PF13245.1 76 0.00079 12.6 0.0 1 1 4.3e-05 0.002 11.3 0.0 10 50 46 85 38 86 0.82 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_76 - 733 AAA_10 PF12846.2 304 1.9e-10 34.0 0.0 1 1 4.9e-11 3.4e-09 29.9 0.0 3 296 187 494 186 500 0.69 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_82 - 249 AAA_10 PF12846.2 304 0.00011 15.0 0.1 1 1 3.1e-06 0.00021 14.1 0.1 2 33 99 130 98 132 0.92 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 ResIII PF04851.10 184 3.5e-05 17.0 0.0 1 1 3.6e-07 4.9e-05 16.5 0.0 18 47 88 120 50 143 0.79 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_41 - 188 Methyltransf_31 PF13847.1 152 2.7e-07 23.6 0.0 1 1 2.5e-09 3.4e-07 23.3 0.0 5 119 52 162 48 183 0.84 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_77 - 1757 Viral_helicase1 PF01443.13 234 0.00042 13.2 0.1 1 2 0.00026 0.035 6.9 0.0 1 23 988 1012 988 1192 0.71 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_77 - 1757 Viral_helicase1 PF01443.13 234 0.00042 13.2 0.1 2 2 0.0033 0.46 3.3 0.0 170 234 1386 1447 1342 1447 0.61 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_82 - 249 DUF2075 PF09848.4 352 0.0013 11.1 0.0 1 1 1.3e-05 0.0018 10.6 0.0 1 50 98 144 98 160 0.81 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 DEAD PF00270.24 169 8.5e-05 15.4 0.0 1 1 8.6e-07 0.00012 15.0 0.0 14 62 98 143 84 197 0.87 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_76 - 733 TrwB_AAD_bind PF10412.4 386 3e-150 493.4 0.0 1 1 5.5e-152 3.8e-150 493.1 0.0 2 386 172 561 171 561 0.99 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_82 - 249 TrwB_AAD_bind PF10412.4 386 0.00087 11.3 0.0 1 1 1.8e-05 0.0013 10.7 0.0 14 43 97 126 84 144 0.84 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_77 - 1757 AAA_11 PF13086.1 236 0.00029 13.8 0.0 1 1 2.1e-06 0.00029 13.8 0.0 2 75 969 1039 968 1059 0.81 # 65716 # 70986 # 1 # ID=1_77;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.597 1_82 - 249 Sigma54_activ_2 PF14532.1 138 1.7e-05 18.2 0.0 1 1 2.9e-07 4e-05 17.0 0.0 20 111 97 202 85 229 0.65 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_76 - 733 T4SS-DNA_transf PF02534.9 469 1e-09 30.8 0.0 1 1 2e-11 2.7e-09 29.4 0.0 264 361 382 476 198 500 0.83 # 63518 # 65716 # 1 # ID=1_76;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.525 1_41 - 188 TIGR00755 TIGR00755 256 2.3e-08 26.6 0.0 1 1 2.3e-10 3.1e-08 26.2 0.0 8 105 29 123 25 134 0.88 # 35467 # 36030 # 1 # ID=1_41;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.592 1_30 - 228 MethyltransfD12 PF02086.10 260 0.00052 12.8 0.0 1 2 0.014 1.8 1.2 0.0 173 188 16 31 10 92 0.81 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 228 MethyltransfD12 PF02086.10 260 0.00052 12.8 0.0 2 2 4e-05 0.0055 9.5 0.0 20 46 163 189 148 197 0.78 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_2 - 657 Plug PF07715.10 108 5.2e-24 78.1 1.9 1 1 1.1e-25 1.6e-23 76.5 1.9 3 108 46 149 44 149 0.94 # 533 # 2503 # -1 # ID=1_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.488 1_19 - 742 UPF0079 PF02367.12 123 0.00047 13.1 0.0 1 1 7.9e-06 0.0011 12.0 0.0 10 42 41 73 31 81 0.84 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_19 - 742 NACHT PF05729.7 166 1.2e-05 18.4 1.3 1 2 2.4e-05 0.0016 11.4 0.0 2 32 48 78 47 86 0.84 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_19 - 742 NACHT PF05729.7 166 1.2e-05 18.4 1.3 2 2 0.0041 0.28 4.2 0.0 48 99 478 541 461 582 0.81 # 16078 # 18303 # -1 # ID=1_19;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-10bp;gc_cont=0.484 1_82 - 249 NACHT PF05729.7 166 0.0005 13.1 1.2 1 1 2.1e-05 0.0014 11.6 0.7 3 24 101 122 99 190 0.90 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 AAA_25 PF13481.1 194 1.8e-07 24.1 0.1 1 1 2.9e-09 3.9e-07 23.0 0.1 28 63 93 129 83 197 0.72 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_30 - 228 Methyltransf_15 PF09445.5 164 0.0011 11.9 0.0 1 2 0.045 6.2 -0.3 0.0 53 79 4 29 2 32 0.90 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_30 - 228 Methyltransf_15 PF09445.5 164 0.0011 11.9 0.0 2 2 4.2e-05 0.0058 9.5 0.0 3 31 166 194 164 209 0.86 # 27713 # 28396 # 1 # ID=1_30;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-10bp;gc_cont=0.566 1_82 - 249 AAA_28 PF13521.1 163 0.00013 15.3 0.0 1 1 1.6e-06 0.00022 14.5 0.0 2 27 101 130 100 167 0.82 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 AAA_5 PF07728.9 139 0.0011 12.1 0.5 1 1 2.1e-05 0.0029 10.7 0.1 1 34 100 136 100 167 0.81 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 1_82 - 249 APS_kinase PF01583.15 157 5.5e-05 16.2 0.0 1 1 1.3e-06 0.00018 14.6 0.0 5 35 101 131 98 139 0.92 # 74144 # 74890 # -1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-10bp;gc_cont=0.486 # # Program: hmmsearch # Version: 3.1b2 (February 2015) # Pipeline mode: SEARCH # Query file: /tmp/4fe45f35-6882-4976-b172-ba43d08eb6a8 # Target file: checkm_output/bins/pm816/genes.faa # Option settings: hmmsearch --domtblout checkm_output/bins/pm816/hmmer.analyze.txt --noali --notextw -E 0.1 --domE 0.1 --cpu 1 /tmp/4fe45f35-6882-4976-b172-ba43d08eb6a8 checkm_output/bins/pm816/genes.faa # Current dir: /mnt/DGK_KLIF/data/klif/reads-for-assembly/trainingsets2/combined/rfplasmid_combined_jellynew2 # Date: Tue Jul 7 17:10:00 2020 # [ok]